Lcy05g020610 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g020610
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr05: 48715794 .. 48720092 (+)
RNA-Seq ExpressionLcy05g020610
SyntenyLcy05g020610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCGATCCTCTAATCCATCAGGGGATTATATTGATGATGTGTTACAGGATATTCAATATAAAGTTACAGATCAGATGAATTCGAGATTAACTGCAACTTTTACAAGAGGTGAGGTGGAAAGGGCTATTAAGCAAATGCATCCCACAAAGGCTCCTGGACCAGATGGATTCTCAGCTCTTTTCTATCAAAAATACTGGTTAGAGGTAGGTGAAACTACTATTCAGAATTGCCTTGATATTTTAAATAATCGAACGTCTGTTAGGAAATGGAATGAAACATATATTGCTCTTATCCCAAAGGTTCATCAGCCTAAATCAGTGTCTGACTATAGACCAATAAGCCTATGCAATGTGGCATATAAAATAGTATCTAAAGTGTTGGTCAATAGAATGAAGTGGATACTAAGGATATTATATCTGACAACCAATCTGCTTTCGTACCGGGTCGTTCCATTTTTGACAATGTTATAGTGGGACATGAGTGTCTCCATACTATAAAATCTAGAAGGAAGGGCAGACATGGTTGGGTGGCAATGAAACTTGATATGAGTAAGGCGTATGATCGAGTCGAATGGTGGTTTTTGGAAAAGGTAATGATCAAGATTGGATTTCATCAGACATGGGTGGATATCATTATGGATTGTGTCCGAACTGCAACTTTCTCCATTCTGATTAATGGAATTCCTACGGGGCGGATTGTGCCACAACGAGGGTTAAGACAGGGAAATCCTCTTTCTCCCTATTTATTTTTGCTCTGTTCCGAATCATTATCTTCTTTGATTACGGAGCAGTGAGGAAAGGGATGTTGACAGGCTTTCGACCTGGTAGGCATTGTCCTGACATTTCTCATCTTTTTTCGCTGACGATAGCCTTATTTTTTGCAAGGCAAAGATTGAGGAGGTATGGTTTTTCAGGAAGATCCTTGAAAGGTACGAGAAAGCTTCAGGCCAAAGGGTTAATTGTAACAAGTCTTCCATGTTTGTTTCTCCGAATGTGTCTAATGAATTTAACACTGTTCTGGCTGATATTTTAAAAGTGTCTGTGGTGGATAGTTTGGGTGTTCCATCATCTTTCTCCCGTAAAAGATGTGATGATCTCAAATCCATTAAACAGAGGGTGTGGCAGACGCTACAAGGTTGGAAAGGTAATTTCTTTTCAATAGGCGGTAAAGAAGTGCTCATCAAAAGTGTAGTGCAAGTTATACCTACGTATTTGATGAGTTGCTTTAGATTGCCACAATCTGTGTGTAAAGATATTCACAGGATGATGGCTAGATTTTGGTGGGGGACCACAGAAACAAGGAAGAAATTGCACTGGAAGAAATGAGAGTCCATGTGTCTTCCGAAGGAGCTGGGTGGTTTGAATTTCAGAGACTTGATCTCCTTTAATCATTCAGTATTAGCAAAACGGGTATGGCGATTGTTTAAAAATCCCCACTTATTAGCTTCTCGAGTTATAGCTGGGCGATATGCATACCAAACATCTTTGCTAACGGCCCCGCCTAAATCTAGTAGTTCCATTTTCTGGAAAGGTTTTGTTTGGGCTCGTGATTTGATTTCCAGGGGTATTCGGAAAAGGGTTGGAAATGGTCATTCAACTCGATTTTTTGATGATCATTGGATCCCAAAGGAAATTAATTTCAGGCCGTTGAGGCTACATAATGCAATGGTGCCAGATGGGGTAATGGTGGCTGATTTTATTACCCCATCTAATGGGTGGGATATGGAGAAAATACGAAATATGGTGTTAGATGAGGATGCAATGTTGATCCAATCTATTCCGATAGGTGGACCAAATGAGGAGGATGTATGAATATGGCATTATTCTCGTCATGGGGATTATTCGACCAAAAGTGGATACAAGCTTGAGATGAGTTCAAATGTAATTCAAGCTTCAACAAGTGATCAGGCTCTTTATCGTTGGTGGAGGCACCTATGGAAAACTAAGATTCCGTTGAAAATAAAATTATTTATCTGGAAGGCATATCATGGATGCTTACCAACTAATTTTTGTCTTTCCAATCGTGGTATGAATGTGCCAAATTTATGCAGGATATGTGAGTGTGAGATGGAAAACATAGATCATGCTCTTTGTGGATGCAAAAGAGCTAAGGAAATCTGTAATGTGATGTTTCCAAGAGTTGATATTGATATAAATGTGGCTAACAATTTTGCAGATAGAATTTTAAGATTGGCGGATCAGCTTAGCAAGGAAGATTTTGAGAAAGCATGTATCACATTATGGGCAATATGGAATGATAAGAATAATTTCCTTATGGGAAAGCCTTTCATGGATTTGCCTACTCACTGTGATTGGATCAATACATATTGGGAGGAAACACGTCGGCGTAGTGCATTTTCAGCTCATCACCTTGAAGAAACACAACCCATTGACGGTACAATGGTCGCCAATGTTGGTGATGGTGGTGCAACGGTCACTCGTCTGAAGGTGTATACGGATGCAGCCGCCCGTCCCTATATGGTGGGGGTTGGGTATGGGGTCGCCATTGTTGGTGGTGAAGACACGCTGCAAGGTGCAATGCAAATGTTCGAGCATCAGTCTTTATCATCACTGGCGGCAGAAGTGCAAGCAATTTTCTATGCTTTTGCAACTTTTGATTCATATGCATATTTCTGAGGCTGTTTTATTTTCACATTCTCAAAGTGCTATTAAGATGATTAATAGGGAGCAGGATCCGGACTCTATGGTGCACTATTGGATTGTGCAAATTCAGGAATTGAGACAAGCTTTCAATTCATTGGCATTTGTTCATGTCGGTAGATCGCGAAATGAAAGAGCGGATGCTTTAGCGAAACATGCCCTCCAAAGATCACAATCTATGTTATGGTTATCTAATTTTCCTTCATGGTTAATCTCAATGGGACAAAAAGCCCATTGCAAATGTATTAACGTTTGTTCCTGCATTATTTAGTAAAGATGCCGTTTTAAGATAAAAAAAAAAAAAGGAAACCAATGAGAAGTTTGGATAAAAAACATCATCAAGCGGTCTAGCCAATGAAATTTTTTATTTTTTATTTTTTTTGGAAAAAGAGAATGTTTGTTTTTTAATATTAAAAAAGTTTCTTAAATTTAAATGCCTCAAATAAAACAAGCTTTTGCAATAATAAAATCGTTGAATGATAAATTTTGATTAATCTCAAATTGCCACATCATTATTTCAAATAAATGACAAAATTACACATTGTTAAATTTGGGAGAAATTATAATTTGACACGTGTTTCAAAATAATTTTGAAGAAAAAAATGACAAATTCCAAAAATATCACTTGTCTTTATCATGACCATTTAATCAAATAAGCTGGCCTCGTCGAATTGAACTATATCGAGATTGGGTTCAAGTTCAAATAAGTCCAATAACAAATTGACTCAAAATCCAAACTCAAAAGATCGAGTCTAAAAACCATCAAAACTCAAACCTACAATATACCTATGAAAAGCTCTCTAAATAACAAGATAATGGGTCAAATATTTAGAGAAGACTCAAAAAGAAGAAGGAAGAAGATTGAAGCTCCAAGAAATTCTTCTAAAGAGTTGAAGACTCCACGAGGACAAAAACTTCTTAAAGACTCCAAAATAATTGAAGATTTTTTGAAACTCTTGAAGACTGGAAACTCTCTAAAGTTCAAAGACGCTTTAAAGTTAGAGACTTATTCAAGACCTAAAGACTTTTGGAGGTCAGAAGGTTTCGAAAACCAAAATCCCATTTGAAGACTTTAAGACTTTGAAGACAAGTTGAAGACATCTGAAACACATAAGATATTAGGACTTCGATCTTTTTTCAAGAAGATCGACAAGTCAAAGGTTGATCCAAAAAAAATCAATAAGTCAAAGGCCAATCATCCAAGAAGATCAATAAGCCAACATGTCGATTAAAAAATATCAATATGTCAAGGATCGATCAAAGACCAACAAAGGCAAGACTGACCTAAGAAGATCAGTTGCTCGAGAACAAGCACTCTAGCCCTCAAATCAAGTCCACGTTCAGGAGACAATATTTAGAGGATAAATATTAGAGATTGTGTTTACAAAATTAATACAAATTCAAGTTCACTCCCATGATTTAAATTTCTTTTGAAATCTGGTGTGAACAAACATAGATAACCTAAAAATAATATATTTATCCCATTATAAAATATCTTGAAAAATAATATAGATGTAAGAAGCATACATCAATGATACTTATACATGGGTGATGTGAAAATATATTAGTGATATACTTTAGTCAATAATACAAAAATAGTATATCACATATATTTTATATTAGGTATATGAGTAA

mRNA sequence

ATGTTTCGATCCTCTAATCCATCAGGGGATTATATTGATGATGTGTTACAGGATATTCAATATAAAGTTACAGATCAGATGAATTCGAGATTAACTGCAACTTTTACAAGAGGTGAGGTGGAAAGGGCTATTAAGCAAATGCATCCCACAAAGGCTCCTGGACCAGATGGATTCTCAGCTCTTTTCTATCAAAAATACTGGTTAGAGGTATATGAGTAA

Coding sequence (CDS)

ATGTTTCGATCCTCTAATCCATCAGGGGATTATATTGATGATGTGTTACAGGATATTCAATATAAAGTTACAGATCAGATGAATTCGAGATTAACTGCAACTTTTACAAGAGGTGAGGTGGAAAGGGCTATTAAGCAAATGCATCCCACAAAGGCTCCTGGACCAGATGGATTCTCAGCTCTTTTCTATCAAAAATACTGGTTAGAGGTATATGAGTAA

Protein sequence

MFRSSNPSGDYIDDVLQDIQYKVTDQMNSRLTATFTRGEVERAIKQMHPTKAPGPDGFSALFYQKYWLEVYE
Homology
[Close]
BLAST of Lcy05g020610 vs. ExPASy TrEMBL
Match: A0A2N9GPZ7 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29430 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.8e-14
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 1   MFRSSNPSGDYIDDVLQDIQYKVTDQMNSRLTATFTRGEVERAIKQMHPTKAPGPDGFSA 60
           +F SSNPS + I  VLQ ++  VT+ MN +L A FT+ EV  A+KQM+PTKAPGPDG SA
Sbjct: 269 IFTSSNPSAESITTVLQGMESVVTNAMNDQLQAEFTKDEVSLALKQMYPTKAPGPDGMSA 328

Query: 61  LFYQKYW 68
           +FYQ YW
Sbjct: 329 IFYQTYW 335

[Close]
BLAST of Lcy05g020610 vs. ExPASy TrEMBL
Match: A0A2N9IPS8 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55418 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.8e-14
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 0 

Query: 1   MFRSSNPSGDYIDDVLQDIQYKVTDQMNSRLTATFTRGEVERAIKQMHPTKAPGPDGFSA 60
           +F SSNPS + I  VLQ ++  VT+ MN +L A FT+ EV  A+KQM+PTKAPGPDG SA
Sbjct: 844 IFTSSNPSAESITTVLQGMESVVTNAMNDQLQAEFTKDEVSLALKQMYPTKAPGPDGMSA 903

Query: 61  LFYQKYW 68
           +FYQ YW
Sbjct: 904 IFYQTYW 910

[Close]
BLAST of Lcy05g020610 vs. ExPASy TrEMBL
Match: A0A6P9ERU0 (uncharacterized protein LOC118349853 OS=Juglans regia OX=51240 GN=LOC118349853 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 1  MFRSSNPSGDYIDDVLQDIQYKVTDQMNSRLTATFTRGEVERAIKQMHPTKAPGPDGFSA 60
          +FRS+ PS +++ D ++ ++ KVT++MN  L++ FTR EVERAIKQM P KAPGPDG   
Sbjct: 25 LFRSTGPSQEHVFDCIKVVKPKVTEEMNRSLSSAFTRAEVERAIKQMAPLKAPGPDGLGV 84

Query: 61 LFYQKYWLEVYE 73
           FY  +W  V E
Sbjct: 85 CFYLDHWKVVGE 96

[Close]
BLAST of Lcy05g020610 vs. ExPASy TrEMBL
Match: A0A2N9GF83 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25970 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 1   MFRSSNPSGDYIDDVLQDIQYKVTDQMNSRLTATFTRGEVERAIKQMHPTKAPGPDGFSA 60
           +F SSNP+G+ I   +  ++  VTD+MN+ L   FT  E+  A+KQM+PTKAPGPDG SA
Sbjct: 871 IFSSSNPTGEVIATSVDGMERVVTDEMNAALLVDFTAKEILEALKQMYPTKAPGPDGMSA 930

Query: 61  LFYQKYW 68
           +FYQ YW
Sbjct: 931 IFYQTYW 937

[Close]
BLAST of Lcy05g020610 vs. ExPASy TrEMBL
Match: A0A6P9EDG2 (uncharacterized protein LOC108996706 OS=Juglans regia OX=51240 GN=LOC108996706 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 1   MFRSSNPSGDYIDDVLQDIQYKVTDQMNSRLTATFTRGEVERAIKQMHPTKAPGPDGFSA 60
           +F S+NP+   I+D L+++   VTD MN  LT TFTRGEVE A+KQM P K+PGPDGF  
Sbjct: 371 LFTSTNPTPADIEDSLREVVPCVTDDMNICLTRTFTRGEVEVALKQMAPLKSPGPDGFGP 430

Query: 61  LFYQKYW 68
            F+QK+W
Sbjct: 431 CFFQKHW 437

[Close]
BLAST of Lcy05g020610 vs. NCBI nr
Match: XP_042965938.1 (uncharacterized protein LOC122299618 [Carya illinoinensis])

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 39/67 (58.21%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 1   MFRSSNPSGDYIDDVLQDIQYKVTDQMNSRLTATFTRGEVERAIKQMHPTKAPGPDGFSA 60
           +F SS PS + I++ L+ ++  VT +MNS LT  FTR EVE AIKQM P K+PGPDGF A
Sbjct: 247 LFTSSRPSSEDIEECLKGVETYVTAEMNSYLTKQFTRIEVEAAIKQMAPLKSPGPDGFGA 306

Query: 61  LFYQKYW 68
            F+QKYW
Sbjct: 307 CFFQKYW 313

[Close]
BLAST of Lcy05g020610 vs. NCBI nr
Match: XP_035551510.1 (uncharacterized protein LOC118349853 [Juglans regia])

HSP 1 Score: 81.3 bits (199), Expect = 3.9e-12
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 0 

Query: 1  MFRSSNPSGDYIDDVLQDIQYKVTDQMNSRLTATFTRGEVERAIKQMHPTKAPGPDGFSA 60
          +FRS+ PS +++ D ++ ++ KVT++MN  L++ FTR EVERAIKQM P KAPGPDG   
Sbjct: 25 LFRSTGPSQEHVFDCIKVVKPKVTEEMNRSLSSAFTRAEVERAIKQMAPLKAPGPDGLGV 84

Query: 61 LFYQKYWLEVYE 73
           FY  +W  V E
Sbjct: 85 CFYLDHWKVVGE 96

[Close]
BLAST of Lcy05g020610 vs. NCBI nr
Match: XP_023901742.1 (uncharacterized protein LOC112013579 [Quercus suber])

HSP 1 Score: 81.3 bits (199), Expect = 3.9e-12
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 1   MFRSSNPSGDYIDDVLQDIQYKVTDQMNSRLTATFTRGEVERAIKQMHPTKAPGPDGFSA 60
           ++ SS+P+G  I++V+  I  +VTD+MNS L+ TFT  EV +A+KQ+HPTKAPGPDG SA
Sbjct: 245 IYTSSSPTG--INEVINAIPRRVTDEMNSELSKTFTSEEVLKALKQLHPTKAPGPDGMSA 304

Query: 61  LFYQKYW 68
            F+  YW
Sbjct: 305 TFFHNYW 309

[Close]
BLAST of Lcy05g020610 vs. NCBI nr
Match: XP_035546285.1 (uncharacterized protein LOC108996706 [Juglans regia])

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-12
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 0 

Query: 1   MFRSSNPSGDYIDDVLQDIQYKVTDQMNSRLTATFTRGEVERAIKQMHPTKAPGPDGFSA 60
           +F S+NP+   I+D L+++   VTD MN  LT TFTRGEVE A+KQM P K+PGPDGF  
Sbjct: 371 LFTSTNPTPADIEDSLREVVPCVTDDMNICLTRTFTRGEVEVALKQMAPLKSPGPDGFGP 430

Query: 61  LFYQKYW 68
            F+QK+W
Sbjct: 431 CFFQKHW 437

[Close]
BLAST of Lcy05g020610 vs. NCBI nr
Match: XP_023912601.1 (uncharacterized protein LOC112024185 [Quercus suber])

HSP 1 Score: 80.9 bits (198), Expect = 5.0e-12
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 0 

Query: 1   MFRSSNPSGDYIDDVLQDIQYKVTDQMNSRLTATFTRGEVERAIKQMHPTKAPGPDGFSA 60
           ++ SS+P+G  I++V+  I  +VTD+MNS LT TFT  EV +A+KQ+HPTKAP PDG SA
Sbjct: 177 IYTSSSPTG--INEVINAIPRRVTDEMNSELTKTFTSEEVLKALKQLHPTKAPRPDGMSA 236

Query: 61  LFYQKYW 68
           +F+  YW
Sbjct: 237 IFFHNYW 241

[Close]
BLAST of Lcy05g020610 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 5.4e-04
Identity = 21/56 (37.50%), Postives = 33/56 (58.93%), Query Frame = 0 

Query: 16  LQDIQ-YKVTDQMNSRLTATFTRGEVERAIKQMHPTKAPGPDGFSALFYQKYWLEV 71
           ++DI  ++  D + SRL+A  +  E+  A+  M   KAPGPD F+A F+ + W  V
Sbjct: 511 IKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVV 566

The following BLAST results are available for this feature:
BLAST of Lcy05g020610 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g020610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2N9GPZ75.8e-1459.70Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9IPS85.8e-1459.70Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A6P9ERU01.9e-1251.39uncharacterized protein LOC118349853 OS=Juglans regia OX=51240 GN=LOC118349853 P... [more]
A0A2N9GF832.4e-1253.73CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2597... [more]
A0A6P9EDG22.4e-1256.72uncharacterized protein LOC108996706 OS=Juglans regia OX=51240 GN=LOC108996706 P... [more]
BLAST of Lcy05g020610 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_042965938.11.3e-1258.21uncharacterized protein LOC122299618 [Carya illinoinensis][more]
XP_035551510.13.9e-1251.39uncharacterized protein LOC118349853 [Juglans regia][more]
XP_023901742.13.9e-1255.22uncharacterized protein LOC112013579 [Quercus suber][more]
XP_035546285.15.0e-1256.72uncharacterized protein LOC108996706 [Juglans regia][more]
XP_023912601.15.0e-1255.22uncharacterized protein LOC112024185 [Quercus suber][more]
BLAST of Lcy05g020610 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G43760.15.4e-0437.50DNAse I-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 10..67
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 10..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g020610.1Lcy05g020610.1mRNA