Lcy05g020520 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g020520
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr05: 48523084 .. 48523619 (-)
RNA-Seq ExpressionLcy05g020520
SyntenyLcy05g020520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGACACCGAATCAAGCAACATGGCGTTAGCTGAGATGATGGGACCAGCATGCAGTGGATTTGGTTGGAACCAGGAGAGGAAGTGCATAGAGGCGGAGAAGGAGATTTTCGATTTGTGGGTGGAGGTAAGCGAACAACGATCATAATTATGATATACATCTAATACACAAATCTGCCAAGAATGCATGCTAACAGAACATTTATCTTCCATCTGTAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCTGTGGTTCAATGAGTTGGTGCTCGTTTTCGGGAAAGACAGAGCTAGAGGAGTGAGAGCCCGAACCCCAATTGTGATAACACCTGAACTAGAGTCGGTAGCCGATCTTGATGAAGACATGAATGTGGACTACGAGGATTGCTATGTCCCTAGTCCCCCAGTTATTGATCCCACCCTTGGAGACGAATTTTGTGGGACACCAAATGGTAGGACGGGTGGTGCAGGACCTTCTAGGGCAGTACATAAGAGACGGCTGTCCATTGGGAACGTGGCAGAG

mRNA sequence

ATGTACGACACCGAATCAAGCAACATGGCGTTAGCTGAGATGATGGGACCAGCATGCAGTGGATTTGGTTGGAACCAGGAGAGGAAGTGCATAGAGGCGGAGAAGGAGATTTTCGATTTGTGGGTGGAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCTGTGGTTCAATGAGTTGGTGCTCGTTTTCGGGAAAGACAGAGCTAGAGGAGTGAGAGCCCGAACCCCAATTGTGATAACACCTGAACTAGAGTCGGTAGCCGATCTTGATGAAGACATGAATGTGGACTACGAGGATTGCTATGTCCCTAGTCCCCCAGTTATTGATCCCACCCTTGGAGACGAATTTTGTGGGACACCAAATGGTAGGACGGGTGGTGCAGGACCTTCTAGGGCAGTACATAAGAGACGGCTGTCCATTGGGAACGTGGCAGAG

Coding sequence (CDS)

ATGTACGACACCGAATCAAGCAACATGGCGTTAGCTGAGATGATGGGACCAGCATGCAGTGGATTTGGTTGGAACCAGGAGAGGAAGTGCATAGAGGCGGAGAAGGAGATTTTCGATTTGTGGGTGGAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCTGTGGTTCAATGAGTTGGTGCTCGTTTTCGGGAAAGACAGAGCTAGAGGAGTGAGAGCCCGAACCCCAATTGTGATAACACCTGAACTAGAGTCGGTAGCCGATCTTGATGAAGACATGAATGTGGACTACGAGGATTGCTATGTCCCTAGTCCCCCAGTTATTGATCCCACCCTTGGAGACGAATTTTGTGGGACACCAAATGGTAGGACGGGTGGTGCAGGACCTTCTAGGGCAGTACATAAGAGACGGCTGTCCATTGGGAACGTGGCAGAG

Protein sequence

MYDTESSNMALAEMMGPACSGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKDRARGVRARTPIVITPELESVADLDEDMNVDYEDCYVPSPPVIDPTLGDEFCGTPNGRTGGAGPSRAVHKRRLSIGNVAE
Homology
BLAST of Lcy05g020520 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.3e-31
Identity = 65/139 (46.76%), Postives = 96/139 (69.06%), Query Frame = 0

Query: 10  ALAEMMGPACSGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKD 69
           A+AEMMGPACSGFGWN+ +KCIE EK +FD WV+GHP A+GL N+PF +F +L +VFG+D
Sbjct: 188 AIAEMMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRD 247

Query: 70  RARGVRARTPIVITPELESVADLDEDMNVDYEDCYVPSPPVIDPTLGDEFCGTPNGRTGG 129
           RA G R +TP+ ++ +     + ++DM+++ ED  +P+P  ++P  G++   TP   T  
Sbjct: 248 RATGGRCKTPVEMSSQTARDTE-EDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHD 307

Query: 130 AGPSRAVHKRRLSIGNVAE 149
           AG SR   KRR   G++ +
Sbjct: 308 AGSSRPSKKRRSYSGDLMD 325

BLAST of Lcy05g020520 vs. ExPASy TrEMBL
Match: A0A1S3CI24 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.9e-28
Identity = 61/130 (46.92%), Postives = 88/130 (67.69%), Query Frame = 0

Query: 10  ALAEMMGPACSGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKD 69
           A+AEMMG ACSGFGWN+ERKCIEAEK +FD WV+GHP A+ L N+PF +F +L +VFG+D
Sbjct: 51  AIAEMMGQACSGFGWNEERKCIEAEKSVFDDWVKGHPNARDLLNKPFPYFYDLKIVFGRD 110

Query: 70  RARGVRARTPIVITPELESVADLDEDMNVDYEDCYVPSPPVIDPTLGDEFCGTPNGRTGG 129
            A G R +TP+ +  +     + ++DM+++ ED  +P+P  ++P  G++   TP      
Sbjct: 111 MATGDRCKTPVEMGSQTARDTE-EDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHD 170

Query: 130 AGPSRAVHKR 140
           AG SR   K+
Sbjct: 171 AGSSRPSKKK 179

BLAST of Lcy05g020520 vs. ExPASy TrEMBL
Match: A0A5D3DJR9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold580G00150 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.0e-28
Identity = 61/139 (43.88%), Postives = 94/139 (67.63%), Query Frame = 0

Query: 10  ALAEMMGPACSGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKD 69
           A+AEMM P CSGFGWN+ERKCI+AEK +FD WV+GHP A+GL N+PF +F +L ++FG+D
Sbjct: 111 AIAEMMRPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQGLLNKPFPYFYDLEILFGRD 170

Query: 70  RARGVRARTPIVITPELESVADLDEDMNVDYEDCYVPSPPVIDPTLGDEFCGTPNGRTGG 129
           RA G R +TP+ +  ++    + ++DM+++ E+  + +P  ++P  G++   TP      
Sbjct: 171 RATGGRCKTPVEMGSQIARDTE-EDDMDINLENFDILNPHGLEPPSGEDMLSTPTSMAHD 230

Query: 130 AGPSRAVHKRRLSIGNVAE 149
           A  SR   KRRL  G++ +
Sbjct: 231 ARSSRPSKKRRLYSGDLMD 248

BLAST of Lcy05g020520 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 6.5e-28
Identity = 64/139 (46.04%), Postives = 92/139 (66.19%), Query Frame = 0

Query: 10  ALAEMMGPACSGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKD 69
           A+A+MMGPACS FGWN+ERKCIEAEK +FD WV+GHP A+GL N+PF +F +L +VFG+D
Sbjct: 81  AIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNKPFAYFYDLEIVFGRD 140

Query: 70  RARGVRARTPIVITPELESVADLDEDMNVDYEDCYVPSPPVIDPTLGDEFCGTPNGRTGG 129
           +A G R + P V      +    ++DM+++ ED  +P+P  ++P  G++   T    T  
Sbjct: 141 KATGGRCK-PFVEMASQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTLISMTHD 200

Query: 130 AGPSRAVHKRRLSIGNVAE 149
           AG SR   KRR   G++ +
Sbjct: 201 AGSSRPSKKRRSYPGDLMD 218

BLAST of Lcy05g020520 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 6.5e-28
Identity = 64/139 (46.04%), Postives = 92/139 (66.19%), Query Frame = 0

Query: 10  ALAEMMGPACSGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKD 69
           A+A+MMGPACS FGWN+ERKCIEAEK +FD WV+GHP A+GL N+PF +F +L +VFG+D
Sbjct: 113 AIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNKPFAYFYDLEIVFGRD 172

Query: 70  RARGVRARTPIVITPELESVADLDEDMNVDYEDCYVPSPPVIDPTLGDEFCGTPNGRTGG 129
           +A G R + P V      +    ++DM+++ ED  +P+P  ++P  G++   T    T  
Sbjct: 173 KATGGRCK-PFVEMASQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTLISMTHD 232

Query: 130 AGPSRAVHKRRLSIGNVAE 149
           AG SR   KRR   G++ +
Sbjct: 233 AGSSRPSKKRRSYPGDLMD 250

BLAST of Lcy05g020520 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-30
Identity = 65/139 (46.76%), Postives = 96/139 (69.06%), Query Frame = 0

Query: 10  ALAEMMGPACSGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKD 69
           A+AEMMGPACSGFGWN+ +KCIE EK +FD WV+GHP A+GL N+PF +F +L +VFG+D
Sbjct: 188 AIAEMMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRD 247

Query: 70  RARGVRARTPIVITPELESVADLDEDMNVDYEDCYVPSPPVIDPTLGDEFCGTPNGRTGG 129
           RA G R +TP+ ++ +     + ++DM+++ ED  +P+P  ++P  G++   TP   T  
Sbjct: 248 RATGGRCKTPVEMSSQTARDTE-EDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHD 307

Query: 130 AGPSRAVHKRRLSIGNVAE 149
           AG SR   KRR   G++ +
Sbjct: 308 AGSSRPSKKRRSYSGDLMD 325

BLAST of Lcy05g020520 vs. NCBI nr
Match: XP_008462939.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 6.0e-28
Identity = 61/130 (46.92%), Postives = 88/130 (67.69%), Query Frame = 0

Query: 10  ALAEMMGPACSGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKD 69
           A+AEMMG ACSGFGWN+ERKCIEAEK +FD WV+GHP A+ L N+PF +F +L +VFG+D
Sbjct: 51  AIAEMMGQACSGFGWNEERKCIEAEKSVFDDWVKGHPNARDLLNKPFPYFYDLKIVFGRD 110

Query: 70  RARGVRARTPIVITPELESVADLDEDMNVDYEDCYVPSPPVIDPTLGDEFCGTPNGRTGG 129
            A G R +TP+ +  +     + ++DM+++ ED  +P+P  ++P  G++   TP      
Sbjct: 111 MATGDRCKTPVEMGSQTARDTE-EDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHD 170

Query: 130 AGPSRAVHKR 140
           AG SR   K+
Sbjct: 171 AGSSRPSKKK 179

BLAST of Lcy05g020520 vs. NCBI nr
Match: KAA0060670.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK23802.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27
Identity = 61/139 (43.88%), Postives = 94/139 (67.63%), Query Frame = 0

Query: 10  ALAEMMGPACSGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKD 69
           A+AEMM P CSGFGWN+ERKCI+AEK +FD WV+GHP A+GL N+PF +F +L ++FG+D
Sbjct: 111 AIAEMMRPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQGLLNKPFPYFYDLEILFGRD 170

Query: 70  RARGVRARTPIVITPELESVADLDEDMNVDYEDCYVPSPPVIDPTLGDEFCGTPNGRTGG 129
           RA G R +TP+ +  ++    + ++DM+++ E+  + +P  ++P  G++   TP      
Sbjct: 171 RATGGRCKTPVEMGSQIARDTE-EDDMDINLENFDILNPHGLEPPSGEDMLSTPTSMAHD 230

Query: 130 AGPSRAVHKRRLSIGNVAE 149
           A  SR   KRRL  G++ +
Sbjct: 231 ARSSRPSKKRRLYSGDLMD 248

BLAST of Lcy05g020520 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-27
Identity = 64/139 (46.04%), Postives = 92/139 (66.19%), Query Frame = 0

Query: 10  ALAEMMGPACSGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKD 69
           A+A+MMGPACS FGWN+ERKCIEAEK +FD WV+GHP A+GL N+PF +F +L +VFG+D
Sbjct: 81  AIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNKPFAYFYDLEIVFGRD 140

Query: 70  RARGVRARTPIVITPELESVADLDEDMNVDYEDCYVPSPPVIDPTLGDEFCGTPNGRTGG 129
           +A G R + P V      +    ++DM+++ ED  +P+P  ++P  G++   T    T  
Sbjct: 141 KATGGRCK-PFVEMASQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTLISMTHD 200

Query: 130 AGPSRAVHKRRLSIGNVAE 149
           AG SR   KRR   G++ +
Sbjct: 201 AGSSRPSKKRRSYPGDLMD 218

BLAST of Lcy05g020520 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-27
Identity = 64/139 (46.04%), Postives = 92/139 (66.19%), Query Frame = 0

Query: 10  ALAEMMGPACSGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKD 69
           A+A+MMGPACS FGWN+ERKCIEAEK +FD WV+GHP A+GL N+PF +F +L +VFG+D
Sbjct: 113 AIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNARGLLNKPFAYFYDLEIVFGRD 172

Query: 70  RARGVRARTPIVITPELESVADLDEDMNVDYEDCYVPSPPVIDPTLGDEFCGTPNGRTGG 129
           +A G R + P V      +    ++DM+++ ED  +P+P  ++P  G++   T    T  
Sbjct: 173 KATGGRCK-PFVEMASQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTLISMTHD 232

Query: 130 AGPSRAVHKRRLSIGNVAE 149
           AG SR   KRR   G++ +
Sbjct: 233 AGSSRPSKKRRSYPGDLMD 250

BLAST of Lcy05g020520 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 5.3e-06
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 0

Query: 20  SGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKDRARGVRA 77
           SGFGW+   K   A  E++  +++ HP  K LR   F +F+EL ++FG+  A G  A
Sbjct: 92  SGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNA 148

BLAST of Lcy05g020520 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05
Identity = 19/80 (23.75%), Postives = 39/80 (48.75%), Query Frame = 0

Query: 20  SGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKDRARGVRARTP 79
           +GF W+  R  + A+ +I++ +++ HP+A+  R +    +  L  +FGK+ + G   R  
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRYTRLA 458

Query: 80  IVITPELESVADLDEDMNVD 100
               P       ++E  + D
Sbjct: 459 QAFDPSPAETVRMNESGSTD 478

BLAST of Lcy05g020520 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 5.9e-05
Identity = 16/53 (30.19%), Postives = 33/53 (62.26%), Query Frame = 0

Query: 21  GFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKDRARG 74
           GF W+Q  + +  +  ++ L+++ HP+A+  + +P L F++L L++G   A G
Sbjct: 88  GFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPVLNFSDLCLIYGYTVADG 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C7T46.3e-3146.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CI242.9e-2846.92uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 P... [more]
A0A5D3DJR95.0e-2843.88Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BC956.5e-2846.04Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3C2526.5e-2846.04uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P... [more]
Match NameE-valueIdentityDescription
TYK07921.11.3e-3046.76hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa][more]
XP_008462939.16.0e-2846.92PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
KAA0060670.11.0e-2743.88retrotransposon protein [Cucumis melo var. makuwa] >TYK23802.1 retrotransposon p... [more]
TYJ96933.11.3e-2746.04retrotransposon protein [Cucumis melo var. makuwa][more]
XP_008455678.11.3e-2746.04PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT5G27260.15.3e-0638.60unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G24960.21.2e-0523.75unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.15.9e-0530.19unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 10..96
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 10..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g020520.1Lcy05g020520.1mRNA