Lcy05g020520 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTACGACACCGAATCAAGCAACATGGCGTTAGCTGAGATGATGGGACCAGCATGCAGTGGATTTGGTTGGAACCAGGAGAGGAAGTGCATAGAGGCGGAGAAGGAGATTTTCGATTTGTGGGTGGAGGTAAGCGAACAACGATCATAATTATGATATACATCTAATACACAAATCTGCCAAGAATGCATGCTAACAGAACATTTATCTTCCATCTGTAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCTGTGGTTCAATGAGTTGGTGCTCGTTTTCGGGAAAGACAGAGCTAGAGGAGTGAGAGCCCGAACCCCAATTGTGATAACACCTGAACTAGAGTCGGTAGCCGATCTTGATGAAGACATGAATGTGGACTACGAGGATTGCTATGTCCCTAGTCCCCCAGTTATTGATCCCACCCTTGGAGACGAATTTTGTGGGACACCAAATGGTAGGACGGGTGGTGCAGGACCTTCTAGGGCAGTACATAAGAGACGGCTGTCCATTGGGAACGTGGCAGAG ATGTACGACACCGAATCAAGCAACATGGCGTTAGCTGAGATGATGGGACCAGCATGCAGTGGATTTGGTTGGAACCAGGAGAGGAAGTGCATAGAGGCGGAGAAGGAGATTTTCGATTTGTGGGTGGAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCTGTGGTTCAATGAGTTGGTGCTCGTTTTCGGGAAAGACAGAGCTAGAGGAGTGAGAGCCCGAACCCCAATTGTGATAACACCTGAACTAGAGTCGGTAGCCGATCTTGATGAAGACATGAATGTGGACTACGAGGATTGCTATGTCCCTAGTCCCCCAGTTATTGATCCCACCCTTGGAGACGAATTTTGTGGGACACCAAATGGTAGGACGGGTGGTGCAGGACCTTCTAGGGCAGTACATAAGAGACGGCTGTCCATTGGGAACGTGGCAGAG ATGTACGACACCGAATCAAGCAACATGGCGTTAGCTGAGATGATGGGACCAGCATGCAGTGGATTTGGTTGGAACCAGGAGAGGAAGTGCATAGAGGCGGAGAAGGAGATTTTCGATTTGTGGGTGGAGGGACATCCACAGGCCAAGGGCCTCCGTAACCGGCCATTCCTGTGGTTCAATGAGTTGGTGCTCGTTTTCGGGAAAGACAGAGCTAGAGGAGTGAGAGCCCGAACCCCAATTGTGATAACACCTGAACTAGAGTCGGTAGCCGATCTTGATGAAGACATGAATGTGGACTACGAGGATTGCTATGTCCCTAGTCCCCCAGTTATTGATCCCACCCTTGGAGACGAATTTTGTGGGACACCAAATGGTAGGACGGGTGGTGCAGGACCTTCTAGGGCAGTACATAAGAGACGGCTGTCCATTGGGAACGTGGCAGAG MYDTESSNMALAEMMGPACSGFGWNQERKCIEAEKEIFDLWVEGHPQAKGLRNRPFLWFNELVLVFGKDRARGVRARTPIVITPELESVADLDEDMNVDYEDCYVPSPPVIDPTLGDEFCGTPNGRTGGAGPSRAVHKRRLSIGNVAE Homology
BLAST of Lcy05g020520 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 6.3e-31 Identity = 65/139 (46.76%), Postives = 96/139 (69.06%), Query Frame = 0
BLAST of Lcy05g020520 vs. ExPASy TrEMBL
Match: A0A1S3CI24 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103501201 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 2.9e-28 Identity = 61/130 (46.92%), Postives = 88/130 (67.69%), Query Frame = 0
BLAST of Lcy05g020520 vs. ExPASy TrEMBL
Match: A0A5D3DJR9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold580G00150 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 5.0e-28 Identity = 61/139 (43.88%), Postives = 94/139 (67.63%), Query Frame = 0
BLAST of Lcy05g020520 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 6.5e-28 Identity = 64/139 (46.04%), Postives = 92/139 (66.19%), Query Frame = 0
BLAST of Lcy05g020520 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 6.5e-28 Identity = 64/139 (46.04%), Postives = 92/139 (66.19%), Query Frame = 0
BLAST of Lcy05g020520 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]) HSP 1 Score: 143.7 bits (361), Expect = 1.3e-30 Identity = 65/139 (46.76%), Postives = 96/139 (69.06%), Query Frame = 0
BLAST of Lcy05g020520 vs. NCBI nr
Match: XP_008462939.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]) HSP 1 Score: 134.8 bits (338), Expect = 6.0e-28 Identity = 61/130 (46.92%), Postives = 88/130 (67.69%), Query Frame = 0
BLAST of Lcy05g020520 vs. NCBI nr
Match: KAA0060670.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK23802.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27 Identity = 61/139 (43.88%), Postives = 94/139 (67.63%), Query Frame = 0
BLAST of Lcy05g020520 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 133.7 bits (335), Expect = 1.3e-27 Identity = 64/139 (46.04%), Postives = 92/139 (66.19%), Query Frame = 0
BLAST of Lcy05g020520 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]) HSP 1 Score: 133.7 bits (335), Expect = 1.3e-27 Identity = 64/139 (46.04%), Postives = 92/139 (66.19%), Query Frame = 0
BLAST of Lcy05g020520 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 5.3e-06 Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 0
BLAST of Lcy05g020520 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 47.4 bits (111), Expect = 1.2e-05 Identity = 19/80 (23.75%), Postives = 39/80 (48.75%), Query Frame = 0
BLAST of Lcy05g020520 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 5.9e-05 Identity = 16/53 (30.19%), Postives = 33/53 (62.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
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