Lcy05g020390 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g020390
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionF-box protein At4g35930
LocationChr05: 46990730 .. 46991215 (-)
RNA-Seq ExpressionLcy05g020390
SyntenyLcy05g020390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAGTCTTCTTCGTCTCCTCCTCCTCGTTGCCCTTTCATTTTCTCTCTTCTACCATTTACAAAGTACATGCTTCTTCTATGCCCTAGCGTTTTTCTTCTCCTCCTCTTTTGTCTTATCCTTTTCTTCATTAGCTCATCTTCTCAACCATTCGTGCAGAGCCCTAGCTCTGCTATCTCCTTCACGGTATAGTAGCATCAAATCAGACAAGAACATTGCTTGTGGCTGCTAGCACTTGAAATTTTACGAAATTGATTTTTGGAGCAAACGGTGGGTTACATTATTGATTTTTTTCTTCAATGTTTTCGAATGATAGGAAGTCGAAGAAACTAAAGAGGAGAAGAAGGTGGAAGGGCTCTGGTGGGAAGTATTTGAAGCACTGTGCTCTAGCGCAGCTACAGTGCAATAAGGGCTCCTTTGATGTTGTCGCTTGTGAAATTGGTGATGCATATAAATCATATTGGTACTCCAAGAACGCCTCGGTTTGA

mRNA sequence

CTAGTCTTCTTCGTCTCCTCCTCCTCGTTGCCCTTTCATTTTCTCTCTTCTACCATTTACAAAGTACATGCTTCTTCTATGCCCTAGCGTTTTTCTTCTCCTCCTCTTTTGTCTTATCCTTTTCTTCATTAGCTCATCTTCTCAACCATTCGTGCAGAGCCCTAGCTCTGCTATCTCCTTCACGGAAGTCGAAGAAACTAAAGAGGAGAAGAAGGTGGAAGGGCTCTGGTGGGAAGTATTTGAAGCACTGTGCTCTAGCGCAGCTACAGTGCAATAAGGGCTCCTTTGATGTTGTCGCTTGTGAAATTGGTGATGCATATAAATCATATTGGTACTCCAAGAACGCCTCGGTTTGA

Coding sequence (CDS)

CTAGTCTTCTTCGTCTCCTCCTCCTCGTTGCCCTTTCATTTTCTCTCTTCTACCATTTACAAAGTACATGCTTCTTCTATGCCCTAGCGTTTTTCTTCTCCTCCTCTTTTGTCTTATCCTTTTCTTCATTAGCTCATCTTCTCAACCATTCGTGCAGAGCCCTAGCTCTGCTATCTCCTTCACGGAAGTCGAAGAAACTAAAGAGGAGAAGAAGGTGGAAGGGCTCTGGTGGGAAGTATTTGAAGCACTGTGCTCTAGCGCAGCTACAGTGCAATAAGGGCTCCTTTGATGTTGTCGCTTGTGAAATTGGTGATGCATATAAATCATATTGGTACTCCAAGAACGCCTCGGTTTGA

Protein sequence

SLLRLLLLVALSFSLFYHLQSTCFFYALAFFFSSSFVLSFSSLAHLLNHSCRALALLSPSRKSKKLKRRRRWKGSGGKYLKHCALAQLQCNKGSFDVVACEIGDAYKSYWYSKNASV
Homology
[Close]
BLAST of Lcy05g020390 vs. ExPASy TrEMBL
Match: A0A6J1CW37 (F-box protein At4g35930 OS=Momordica charantia OX=3673 GN=LOC111014758 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 56  LLSPSRKSKKLKRRRRWKGSGGKYLKHCALAQLQCNKGSFDVVACEIG 104
           + S  R SKKLKRRRR KGSGGKYLK  ALAQL+C+KGS      ++G
Sbjct: 4   VFSNDRDSKKLKRRRRSKGSGGKYLKPGALAQLRCSKGSVAKSCTDLG 51

[Close]
BLAST of Lcy05g020390 vs. ExPASy TrEMBL
Match: A0A5A7UEK6 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00560 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.9e-04
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 61  RKSKKLKRRRRWKGSGGKYLKHCALAQLQCNKGSFDVVACEIG 104
           R+ KKLKRRRR KGSGGKYLK  ALAQL+C+KGS      ++G
Sbjct: 9   REPKKLKRRRRSKGSGGKYLKPGALAQLRCSKGSVAKSCTDLG 51

[Close]
BLAST of Lcy05g020390 vs. ExPASy TrEMBL
Match: A0A1S3BKS0 (F-box protein At4g35930 OS=Cucumis melo OX=3656 GN=LOC103490677 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.9e-04
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 0 

Query: 61  RKSKKLKRRRRWKGSGGKYLKHCALAQLQCNKGSFDVVACEIG 104
           R+ KKLKRRRR KGSGGKYLK  ALAQL+C+KGS      ++G
Sbjct: 9   REPKKLKRRRRSKGSGGKYLKPGALAQLRCSKGSVAKSCTDLG 51

[Close]
BLAST of Lcy05g020390 vs. NCBI nr
Match: XP_022145262.1 (F-box protein At4g35930 [Momordica charantia] >XP_022145263.1 F-box protein At4g35930 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-04
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 56  LLSPSRKSKKLKRRRRWKGSGGKYLKHCALAQLQCNKGSFDVVACEIG 104
           + S  R SKKLKRRRR KGSGGKYLK  ALAQL+C+KGS      ++G
Sbjct: 4   VFSNDRDSKKLKRRRRSKGSGGKYLKPGALAQLRCSKGSVAKSCTDLG 51

The following BLAST results are available for this feature:
BLAST of Lcy05g020390 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g020390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CW371.8e-0462.50F-box protein At4g35930 OS=Momordica charantia OX=3673 GN=LOC111014758 PE=4 SV=1[more]
A0A5A7UEK68.9e-0465.12F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00560 ... [more]
A0A1S3BKS08.9e-0465.12F-box protein At4g35930 OS=Cucumis melo OX=3656 GN=LOC103490677 PE=4 SV=1[more]
BLAST of Lcy05g020390 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145262.13.7e-0462.50F-box protein At4g35930 [Momordica charantia] >XP_022145263.1 F-box protein At4g... [more]
BLAST of Lcy05g020390 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g020390.1Lcy05g020390.1mRNA