Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGGAATAGGATCAACAAATCGAACATAATTCGGATTACTGATGATAGGGATGTTTTGTGGTTCATGTCAAACATTGTCGGTGGGATGTTTAGTGACATATGTGTTGTCGCCGACAACGATGGAGGGGATGTACCGGCTACAATTTCACAGTGTCTTGGAGGTGGGACCCCTGGGTCTACCCTACAGTAGAAAGTCAGCAAAACAAAAAATACAAAATTGTTGACTTCATCGACGTTGACTCACTGGGTTCGTCTATAACTGTGAGTGAAGATTTGGTTTTTCAAAGCAAAGATGAGTTGAAGAAATCAATATACTTACCTGCTATAAAGAATAGTTTCCAACTACGTACTATCAAATCAAATCATAAATCGTTTGTGGTTGGATGTAAGGATATGTTATGTTGTTGGTACATACGGTCATCTTGGTATTTAGATGAGAATTTGTGGATGGTTCGTAAGTTTGTGGACAAACATGAATGCCCTATTGATATTGTAAAAAATGACCACAGACAAGGTAGAACTTTGTTTGTGGGTGGGTGCGTCAAGTCACTTTTAAAG
mRNA sequence
ATGTATAGGAATAGGATCAACAAATCGAACATAATTCGGATTACTGATGATAGGGATGTTTTGTGGTTCATGTCAAACATTGTCGGTGGGATGTTTAGTGACATATGTGTTGTCGCCGACAACGATGGAGGGGATGTACCGGCTACAATTTCACAGTGTCTTGGAGTAGAAAGTCAGCAAAACAAAAAATACAAAATTGTTGACTTCATCGACGTTGACTCACTGGGTTCGTCTATAACTGTGAGTGAAGATTTGGTTTTTCAAAGCAAAGATGAGTTGAAGAAATCAATATACTTACCTGCTATAAAGAATAGTTTCCAACTACGTACTATCAAATCAAATCATAAATCGTTTGTGGTTGGATATGAGAATTTGTGGATGGTTCGTAAGTTTGTGGACAAACATGAATGCCCTATTGATATTGTAAAAAATGACCACAGACAAGGTAGAACTTTGTTTGTGGGTGGGTGCGTCAAGTCACTTTTAAAG
Coding sequence (CDS)
ATGTATAGGAATAGGATCAACAAATCGAACATAATTCGGATTACTGATGATAGGGATGTTTTGTGGTTCATGTCAAACATTGTCGGTGGGATGTTTAGTGACATATGTGTTGTCGCCGACAACGATGGAGGGGATGTACCGGCTACAATTTCACAGTGTCTTGGAGTAGAAAGTCAGCAAAACAAAAAATACAAAATTGTTGACTTCATCGACGTTGACTCACTGGGTTCGTCTATAACTGTGAGTGAAGATTTGGTTTTTCAAAGCAAAGATGAGTTGAAGAAATCAATATACTTACCTGCTATAAAGAATAGTTTCCAACTACGTACTATCAAATCAAATCATAAATCGTTTGTGGTTGGATATGAGAATTTGTGGATGGTTCGTAAGTTTGTGGACAAACATGAATGCCCTATTGATATTGTAAAAAATGACCACAGACAAGGTAGAACTTTGTTTGTGGGTGGGTGCGTCAAGTCACTTTTAAAG
Protein sequence
MYRNRINKSNIIRITDDRDVLWFMSNIVGGMFSDICVVADNDGGDVPATISQCLGVESQQNKKYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSFVVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK
Homology
BLAST of Lcy05g019940 vs. ExPASy TrEMBL
Match:
A0A5A7TEC9 (Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00460 PE=4 SV=1)
HSP 1 Score: 100.9 bits (250), Expect = 5.2e-18
Identity = 63/185 (34.05%), Postives = 94/185 (50.81%), Query Frame = 0
Query: 1 MYRNRINKSNIIRITDDRDVLWFMSNIVGGMFSD--ICVVADN----DGGDVPATISQCL 60
+Y N S +IRI DD+DV W M +V F D + +V D D G+ P S+
Sbjct: 60 LYWKDCNNSKLIRIFDDKDVSWIM--LVLSKFPDNYLLIVVDTVPAIDTGNTPYLSSELP 119
Query: 61 GVESQQNKKYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSN 120
E + K I+D +S + I + +F+ K LKK+IY+ A+ +SF+L T+ SN
Sbjct: 120 RTEDSRTKTV-IIDLNAFESPHTVIHIRVGSMFRQKSVLKKAIYMLALNSSFELVTVMSN 179
Query: 121 HKSF----------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCV 164
SF ++ ++W+VRKF D H C +D+VKNDH+Q +L V C
Sbjct: 180 RTSFNIRCKDPACPWYLHASILKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSLIVSECT 239
BLAST of Lcy05g019940 vs. ExPASy TrEMBL
Match:
A0A5A7VGR4 (Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00860 PE=4 SV=1)
HSP 1 Score: 100.1 bits (248), Expect = 8.8e-18
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 0
Query: 7 NKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGVESQQNK 66
N S +IRI DD+DV W M + +D+ +V D D G+ P S+ E + K
Sbjct: 66 NNSKLIRIVDDKDVSWIMLVLSKLPDNDLLIVVDTAPATDIGNTPYMSSKLPRTEDSRTK 125
Query: 67 KYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSF---- 126
I+D +S + I + +F+ K LKK+IY+ A+ +SF+L T++SN SF
Sbjct: 126 NV-IIDLNAFESPNTVIHIRVGSMFRQKTVLKKAIYMLALNSSFELVTVRSNRTSFDIRC 185
Query: 127 ------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK 164
V ++W++RKF D H C +D+VKNDH+Q + V C K + K
Sbjct: 186 KDPSCPWYLRASVFKKSDIWIIRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFK 241
BLAST of Lcy05g019940 vs. ExPASy TrEMBL
Match:
A0A5A7V1Z6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G001170 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 4.4e-17
Identity = 60/179 (33.52%), Postives = 89/179 (49.72%), Query Frame = 0
Query: 5 RINKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGVESQQ 64
R + +IRI DD+DV W M + +D+ +V D D G+ P S+ E +
Sbjct: 34 RWQQLKLIRIVDDKDVSWIMLVLSKFPNNDLLIVVDTAPATDIGNTPYMSSELPRTEDSR 93
Query: 65 NKKYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSF-- 124
+ I+D +S + I V +F K LKKSIY+ A+ +SF+L T++SN SF
Sbjct: 94 TENV-IIDLNAFESPNTVIHVRVGSMFSQKSVLKKSIYMLALNSSFELVTVRSNRTSFDI 153
Query: 125 --------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK 164
V ++W+VRKF D H C +D+VKNDH+Q + V C K + K
Sbjct: 154 RCKDPSCLWYLRASVFKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFK 211
BLAST of Lcy05g019940 vs. ExPASy TrEMBL
Match:
A0A1S3C300 (uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=4 SV=1)
HSP 1 Score: 97.8 bits (242), Expect = 4.4e-17
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 0
Query: 7 NKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGVESQQNK 66
N S +IRI DD+DV W M + +D+ VV D D G+ P S+ E + +
Sbjct: 59 NNSKLIRIVDDKDVSWIMLVLSKLPDNDLLVVLDTAPATDIGNTPYMSSELPRTEDSRTE 118
Query: 67 KYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSF---- 126
I+D +S + I + +F+ K LKK+IY+ A+ +SF+L T++SN SF
Sbjct: 119 NV-IIDLNAFESPNTVIHIRVGSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTSFDIRC 178
Query: 127 ------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK 164
V ++W+VRKF+ H C +D+VKNDH+Q + V C K + K
Sbjct: 179 KDPSCPWYLRASVFKRSDIWIVRKFIYTHMCSVDVVKNDHKQATSWIVSECTKLIFK 234
BLAST of Lcy05g019940 vs. ExPASy TrEMBL
Match:
A0A5A7VAU3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00150 PE=4 SV=1)
HSP 1 Score: 89.7 bits (221), Expect = 1.2e-14
Identity = 57/181 (31.49%), Postives = 90/181 (49.72%), Query Frame = 0
Query: 1 MYRNRINKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGV 60
+Y N S +I I DD+DV W M + +D+ +V D D G+ P S
Sbjct: 60 LYWKYCNNSKLIWIVDDKDVSWIMLVLSKFPDNDLLIVVDTAPATDIGNTPYMSSDLPRT 119
Query: 61 ESQQNKKYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHK 120
E +++ I+D +S + I + +F+ K LKK+IY+ A+ +SF+L T++SN
Sbjct: 120 EDSRSENI-IIDLNAFESPNTLIHIRVGSMFRQKSVLKKAIYMLALNSSFELVTVRSNRT 179
Query: 121 SFVVGYEN---LW-----------MVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLL 164
SF + ++ W + RKF D H C +D+VKNDH+Q + V C K +
Sbjct: 180 SFNIRCKDPACPWYLRALVLKKSDIYRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIF 239
BLAST of Lcy05g019940 vs. NCBI nr
Match:
KAA0039579.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK01721.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])
HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 63/185 (34.05%), Postives = 94/185 (50.81%), Query Frame = 0
Query: 1 MYRNRINKSNIIRITDDRDVLWFMSNIVGGMFSD--ICVVADN----DGGDVPATISQCL 60
+Y N S +IRI DD+DV W M +V F D + +V D D G+ P S+
Sbjct: 60 LYWKDCNNSKLIRIFDDKDVSWIM--LVLSKFPDNYLLIVVDTVPAIDTGNTPYLSSELP 119
Query: 61 GVESQQNKKYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSN 120
E + K I+D +S + I + +F+ K LKK+IY+ A+ +SF+L T+ SN
Sbjct: 120 RTEDSRTKTV-IIDLNAFESPHTVIHIRVGSMFRQKSVLKKAIYMLALNSSFELVTVMSN 179
Query: 121 HKSF----------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCV 164
SF ++ ++W+VRKF D H C +D+VKNDH+Q +L V C
Sbjct: 180 RTSFNIRCKDPACPWYLHASILKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSLIVSECT 239
BLAST of Lcy05g019940 vs. NCBI nr
Match:
KAA0067552.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYJ97202.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])
HSP 1 Score: 100.1 bits (248), Expect = 1.8e-17
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 0
Query: 7 NKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGVESQQNK 66
N S +IRI DD+DV W M + +D+ +V D D G+ P S+ E + K
Sbjct: 66 NNSKLIRIVDDKDVSWIMLVLSKLPDNDLLIVVDTAPATDIGNTPYMSSKLPRTEDSRTK 125
Query: 67 KYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSF---- 126
I+D +S + I + +F+ K LKK+IY+ A+ +SF+L T++SN SF
Sbjct: 126 NV-IIDLNAFESPNTVIHIRVGSMFRQKTVLKKAIYMLALNSSFELVTVRSNRTSFDIRC 185
Query: 127 ------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK 164
V ++W++RKF D H C +D+VKNDH+Q + V C K + K
Sbjct: 186 KDPSCPWYLRASVFKKSDIWIIRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFK 241
BLAST of Lcy05g019940 vs. NCBI nr
Match:
KAA0061274.1 (uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa])
HSP 1 Score: 97.8 bits (242), Expect = 9.0e-17
Identity = 60/179 (33.52%), Postives = 89/179 (49.72%), Query Frame = 0
Query: 5 RINKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGVESQQ 64
R + +IRI DD+DV W M + +D+ +V D D G+ P S+ E +
Sbjct: 34 RWQQLKLIRIVDDKDVSWIMLVLSKFPNNDLLIVVDTAPATDIGNTPYMSSELPRTEDSR 93
Query: 65 NKKYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSF-- 124
+ I+D +S + I V +F K LKKSIY+ A+ +SF+L T++SN SF
Sbjct: 94 TENV-IIDLNAFESPNTVIHVRVGSMFSQKSVLKKSIYMLALNSSFELVTVRSNRTSFDI 153
Query: 125 --------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK 164
V ++W+VRKF D H C +D+VKNDH+Q + V C K + K
Sbjct: 154 RCKDPSCLWYLRASVFKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFK 211
BLAST of Lcy05g019940 vs. NCBI nr
Match:
XP_008455803.1 (PREDICTED: uncharacterized protein LOC103495899 [Cucumis melo])
HSP 1 Score: 97.8 bits (242), Expect = 9.0e-17
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 0
Query: 7 NKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGVESQQNK 66
N S +IRI DD+DV W M + +D+ VV D D G+ P S+ E + +
Sbjct: 59 NNSKLIRIVDDKDVSWIMLVLSKLPDNDLLVVLDTAPATDIGNTPYMSSELPRTEDSRTE 118
Query: 67 KYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSF---- 126
I+D +S + I + +F+ K LKK+IY+ A+ +SF+L T++SN SF
Sbjct: 119 NV-IIDLNAFESPNTVIHIRVGSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTSFDIRC 178
Query: 127 ------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK 164
V ++W+VRKF+ H C +D+VKNDH+Q + V C K + K
Sbjct: 179 KDPSCPWYLRASVFKRSDIWIVRKFIYTHMCSVDVVKNDHKQATSWIVSECTKLIFK 234
BLAST of Lcy05g019940 vs. NCBI nr
Match:
XP_038887125.1 (uncharacterized protein LOC120077310 [Benincasa hispida])
HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 64/185 (34.59%), Postives = 93/185 (50.27%), Query Frame = 0
Query: 1 MYRNRINKSNIIRITDDRDVLWFMSNIVGGMFSDICVVADNDGGDVPATISQCLGVESQ- 60
MY + SN+I I +D+ +LW M + D+CVV D+ V L + ++
Sbjct: 60 MYWIGSSNSNLISIVEDKYILWLMLMLPDSPEIDLCVVVDH-VSSVAQNSQNTLYLNNES 119
Query: 61 ----QNKKY-----KIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRT 120
Q+ K+ +IVD D D S I + L F SK LKK+IY A+KNSF+L T
Sbjct: 120 TNIDQSFKHPAGNNEIVDSQDFDVFQSGIPIRVGLPFSSKSVLKKAIYFLALKNSFELTT 179
Query: 121 IKSNHKSFVVGYENL----------------WMVRKFVDKHECPIDIVKNDHRQGRTLFV 160
+SN SF + +++ W+V+KF+D H+C IDIVK+ HRQ + V
Sbjct: 180 TRSNKTSFEIHCKDMSCGWYLRASVYRGGGVWIVQKFIDNHKCCIDIVKDGHRQATSWIV 239
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TEC9 | 5.2e-18 | 34.05 | Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5A7VGR4 | 8.8e-18 | 33.33 | Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5A7V1Z6 | 4.4e-17 | 33.52 | CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
A0A1S3C300 | 4.4e-17 | 33.33 | uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=... | [more] |
A0A5A7VAU3 | 1.2e-14 | 31.49 | MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... | [more] |
Match Name | E-value | Identity | Description | |
KAA0039579.1 | 1.1e-17 | 34.05 | protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK01721.1 prot... | [more] |
KAA0067552.1 | 1.8e-17 | 33.33 | protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYJ97202.1 prot... | [more] |
KAA0061274.1 | 9.0e-17 | 33.52 | uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa] | [more] |
XP_008455803.1 | 9.0e-17 | 33.33 | PREDICTED: uncharacterized protein LOC103495899 [Cucumis melo] | [more] |
XP_038887125.1 | 1.5e-16 | 34.59 | uncharacterized protein LOC120077310 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |