Lcy05g019940 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g019940
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionDBD_Tnp_Mut domain-containing protein
LocationChr05: 43732149 .. 43732711 (-)
RNA-Seq ExpressionLcy05g019940
SyntenyLcy05g019940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATAGGAATAGGATCAACAAATCGAACATAATTCGGATTACTGATGATAGGGATGTTTTGTGGTTCATGTCAAACATTGTCGGTGGGATGTTTAGTGACATATGTGTTGTCGCCGACAACGATGGAGGGGATGTACCGGCTACAATTTCACAGTGTCTTGGAGGTGGGACCCCTGGGTCTACCCTACAGTAGAAAGTCAGCAAAACAAAAAATACAAAATTGTTGACTTCATCGACGTTGACTCACTGGGTTCGTCTATAACTGTGAGTGAAGATTTGGTTTTTCAAAGCAAAGATGAGTTGAAGAAATCAATATACTTACCTGCTATAAAGAATAGTTTCCAACTACGTACTATCAAATCAAATCATAAATCGTTTGTGGTTGGATGTAAGGATATGTTATGTTGTTGGTACATACGGTCATCTTGGTATTTAGATGAGAATTTGTGGATGGTTCGTAAGTTTGTGGACAAACATGAATGCCCTATTGATATTGTAAAAAATGACCACAGACAAGGTAGAACTTTGTTTGTGGGTGGGTGCGTCAAGTCACTTTTAAAG

mRNA sequence

ATGTATAGGAATAGGATCAACAAATCGAACATAATTCGGATTACTGATGATAGGGATGTTTTGTGGTTCATGTCAAACATTGTCGGTGGGATGTTTAGTGACATATGTGTTGTCGCCGACAACGATGGAGGGGATGTACCGGCTACAATTTCACAGTGTCTTGGAGTAGAAAGTCAGCAAAACAAAAAATACAAAATTGTTGACTTCATCGACGTTGACTCACTGGGTTCGTCTATAACTGTGAGTGAAGATTTGGTTTTTCAAAGCAAAGATGAGTTGAAGAAATCAATATACTTACCTGCTATAAAGAATAGTTTCCAACTACGTACTATCAAATCAAATCATAAATCGTTTGTGGTTGGATATGAGAATTTGTGGATGGTTCGTAAGTTTGTGGACAAACATGAATGCCCTATTGATATTGTAAAAAATGACCACAGACAAGGTAGAACTTTGTTTGTGGGTGGGTGCGTCAAGTCACTTTTAAAG

Coding sequence (CDS)

ATGTATAGGAATAGGATCAACAAATCGAACATAATTCGGATTACTGATGATAGGGATGTTTTGTGGTTCATGTCAAACATTGTCGGTGGGATGTTTAGTGACATATGTGTTGTCGCCGACAACGATGGAGGGGATGTACCGGCTACAATTTCACAGTGTCTTGGAGTAGAAAGTCAGCAAAACAAAAAATACAAAATTGTTGACTTCATCGACGTTGACTCACTGGGTTCGTCTATAACTGTGAGTGAAGATTTGGTTTTTCAAAGCAAAGATGAGTTGAAGAAATCAATATACTTACCTGCTATAAAGAATAGTTTCCAACTACGTACTATCAAATCAAATCATAAATCGTTTGTGGTTGGATATGAGAATTTGTGGATGGTTCGTAAGTTTGTGGACAAACATGAATGCCCTATTGATATTGTAAAAAATGACCACAGACAAGGTAGAACTTTGTTTGTGGGTGGGTGCGTCAAGTCACTTTTAAAG

Protein sequence

MYRNRINKSNIIRITDDRDVLWFMSNIVGGMFSDICVVADNDGGDVPATISQCLGVESQQNKKYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSFVVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK
Homology
BLAST of Lcy05g019940 vs. ExPASy TrEMBL
Match: A0A5A7TEC9 (Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00460 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.2e-18
Identity = 63/185 (34.05%), Postives = 94/185 (50.81%), Query Frame = 0

Query: 1   MYRNRINKSNIIRITDDRDVLWFMSNIVGGMFSD--ICVVADN----DGGDVPATISQCL 60
           +Y    N S +IRI DD+DV W M  +V   F D  + +V D     D G+ P   S+  
Sbjct: 60  LYWKDCNNSKLIRIFDDKDVSWIM--LVLSKFPDNYLLIVVDTVPAIDTGNTPYLSSELP 119

Query: 61  GVESQQNKKYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSN 120
             E  + K   I+D    +S  + I +    +F+ K  LKK+IY+ A+ +SF+L T+ SN
Sbjct: 120 RTEDSRTKTV-IIDLNAFESPHTVIHIRVGSMFRQKSVLKKAIYMLALNSSFELVTVMSN 179

Query: 121 HKSF----------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCV 164
             SF                ++   ++W+VRKF D H C +D+VKNDH+Q  +L V  C 
Sbjct: 180 RTSFNIRCKDPACPWYLHASILKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSLIVSECT 239

BLAST of Lcy05g019940 vs. ExPASy TrEMBL
Match: A0A5A7VGR4 (Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00860 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.8e-18
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 0

Query: 7   NKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGVESQQNK 66
           N S +IRI DD+DV W M  +     +D+ +V D     D G+ P   S+    E  + K
Sbjct: 66  NNSKLIRIVDDKDVSWIMLVLSKLPDNDLLIVVDTAPATDIGNTPYMSSKLPRTEDSRTK 125

Query: 67  KYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSF---- 126
              I+D    +S  + I +    +F+ K  LKK+IY+ A+ +SF+L T++SN  SF    
Sbjct: 126 NV-IIDLNAFESPNTVIHIRVGSMFRQKTVLKKAIYMLALNSSFELVTVRSNRTSFDIRC 185

Query: 127 ------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK 164
                       V    ++W++RKF D H C +D+VKNDH+Q  +  V  C K + K
Sbjct: 186 KDPSCPWYLRASVFKKSDIWIIRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFK 241

BLAST of Lcy05g019940 vs. ExPASy TrEMBL
Match: A0A5A7V1Z6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G001170 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.4e-17
Identity = 60/179 (33.52%), Postives = 89/179 (49.72%), Query Frame = 0

Query: 5   RINKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGVESQQ 64
           R  +  +IRI DD+DV W M  +     +D+ +V D     D G+ P   S+    E  +
Sbjct: 34  RWQQLKLIRIVDDKDVSWIMLVLSKFPNNDLLIVVDTAPATDIGNTPYMSSELPRTEDSR 93

Query: 65  NKKYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSF-- 124
            +   I+D    +S  + I V    +F  K  LKKSIY+ A+ +SF+L T++SN  SF  
Sbjct: 94  TENV-IIDLNAFESPNTVIHVRVGSMFSQKSVLKKSIYMLALNSSFELVTVRSNRTSFDI 153

Query: 125 --------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK 164
                         V    ++W+VRKF D H C +D+VKNDH+Q  +  V  C K + K
Sbjct: 154 RCKDPSCLWYLRASVFKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFK 211

BLAST of Lcy05g019940 vs. ExPASy TrEMBL
Match: A0A1S3C300 (uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.4e-17
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 0

Query: 7   NKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGVESQQNK 66
           N S +IRI DD+DV W M  +     +D+ VV D     D G+ P   S+    E  + +
Sbjct: 59  NNSKLIRIVDDKDVSWIMLVLSKLPDNDLLVVLDTAPATDIGNTPYMSSELPRTEDSRTE 118

Query: 67  KYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSF---- 126
              I+D    +S  + I +    +F+ K  LKK+IY+ A+ +SF+L T++SN  SF    
Sbjct: 119 NV-IIDLNAFESPNTVIHIRVGSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTSFDIRC 178

Query: 127 ------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK 164
                       V    ++W+VRKF+  H C +D+VKNDH+Q  +  V  C K + K
Sbjct: 179 KDPSCPWYLRASVFKRSDIWIVRKFIYTHMCSVDVVKNDHKQATSWIVSECTKLIFK 234

BLAST of Lcy05g019940 vs. ExPASy TrEMBL
Match: A0A5A7VAU3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00150 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.2e-14
Identity = 57/181 (31.49%), Postives = 90/181 (49.72%), Query Frame = 0

Query: 1   MYRNRINKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGV 60
           +Y    N S +I I DD+DV W M  +     +D+ +V D     D G+ P   S     
Sbjct: 60  LYWKYCNNSKLIWIVDDKDVSWIMLVLSKFPDNDLLIVVDTAPATDIGNTPYMSSDLPRT 119

Query: 61  ESQQNKKYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHK 120
           E  +++   I+D    +S  + I +    +F+ K  LKK+IY+ A+ +SF+L T++SN  
Sbjct: 120 EDSRSENI-IIDLNAFESPNTLIHIRVGSMFRQKSVLKKAIYMLALNSSFELVTVRSNRT 179

Query: 121 SFVVGYEN---LW-----------MVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLL 164
           SF +  ++    W           + RKF D H C +D+VKNDH+Q  +  V  C K + 
Sbjct: 180 SFNIRCKDPACPWYLRALVLKKSDIYRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIF 239

BLAST of Lcy05g019940 vs. NCBI nr
Match: KAA0039579.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK01721.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 63/185 (34.05%), Postives = 94/185 (50.81%), Query Frame = 0

Query: 1   MYRNRINKSNIIRITDDRDVLWFMSNIVGGMFSD--ICVVADN----DGGDVPATISQCL 60
           +Y    N S +IRI DD+DV W M  +V   F D  + +V D     D G+ P   S+  
Sbjct: 60  LYWKDCNNSKLIRIFDDKDVSWIM--LVLSKFPDNYLLIVVDTVPAIDTGNTPYLSSELP 119

Query: 61  GVESQQNKKYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSN 120
             E  + K   I+D    +S  + I +    +F+ K  LKK+IY+ A+ +SF+L T+ SN
Sbjct: 120 RTEDSRTKTV-IIDLNAFESPHTVIHIRVGSMFRQKSVLKKAIYMLALNSSFELVTVMSN 179

Query: 121 HKSF----------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCV 164
             SF                ++   ++W+VRKF D H C +D+VKNDH+Q  +L V  C 
Sbjct: 180 RTSFNIRCKDPACPWYLHASILKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSLIVSECT 239

BLAST of Lcy05g019940 vs. NCBI nr
Match: KAA0067552.1 (protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYJ97202.1 protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-17
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 0

Query: 7   NKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGVESQQNK 66
           N S +IRI DD+DV W M  +     +D+ +V D     D G+ P   S+    E  + K
Sbjct: 66  NNSKLIRIVDDKDVSWIMLVLSKLPDNDLLIVVDTAPATDIGNTPYMSSKLPRTEDSRTK 125

Query: 67  KYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSF---- 126
              I+D    +S  + I +    +F+ K  LKK+IY+ A+ +SF+L T++SN  SF    
Sbjct: 126 NV-IIDLNAFESPNTVIHIRVGSMFRQKTVLKKAIYMLALNSSFELVTVRSNRTSFDIRC 185

Query: 127 ------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK 164
                       V    ++W++RKF D H C +D+VKNDH+Q  +  V  C K + K
Sbjct: 186 KDPSCPWYLRASVFKKSDIWIIRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFK 241

BLAST of Lcy05g019940 vs. NCBI nr
Match: KAA0061274.1 (uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 9.0e-17
Identity = 60/179 (33.52%), Postives = 89/179 (49.72%), Query Frame = 0

Query: 5   RINKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGVESQQ 64
           R  +  +IRI DD+DV W M  +     +D+ +V D     D G+ P   S+    E  +
Sbjct: 34  RWQQLKLIRIVDDKDVSWIMLVLSKFPNNDLLIVVDTAPATDIGNTPYMSSELPRTEDSR 93

Query: 65  NKKYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSF-- 124
            +   I+D    +S  + I V    +F  K  LKKSIY+ A+ +SF+L T++SN  SF  
Sbjct: 94  TENV-IIDLNAFESPNTVIHVRVGSMFSQKSVLKKSIYMLALNSSFELVTVRSNRTSFDI 153

Query: 125 --------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK 164
                         V    ++W+VRKF D H C +D+VKNDH+Q  +  V  C K + K
Sbjct: 154 RCKDPSCLWYLRASVFKKSDIWIVRKFTDTHLCSVDVVKNDHKQATSWIVSECTKLIFK 211

BLAST of Lcy05g019940 vs. NCBI nr
Match: XP_008455803.1 (PREDICTED: uncharacterized protein LOC103495899 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 9.0e-17
Identity = 59/177 (33.33%), Postives = 90/177 (50.85%), Query Frame = 0

Query: 7   NKSNIIRITDDRDVLWFMSNIVGGMFSDICVVAD----NDGGDVPATISQCLGVESQQNK 66
           N S +IRI DD+DV W M  +     +D+ VV D     D G+ P   S+    E  + +
Sbjct: 59  NNSKLIRIVDDKDVSWIMLVLSKLPDNDLLVVLDTAPATDIGNTPYMSSELPRTEDSRTE 118

Query: 67  KYKIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRTIKSNHKSF---- 126
              I+D    +S  + I +    +F+ K  LKK+IY+ A+ +SF+L T++SN  SF    
Sbjct: 119 NV-IIDLNAFESPNTVIHIRVGSMFRQKSVLKKAIYMLALNSSFELVTVRSNRTSFDIRC 178

Query: 127 ------------VVGYENLWMVRKFVDKHECPIDIVKNDHRQGRTLFVGGCVKSLLK 164
                       V    ++W+VRKF+  H C +D+VKNDH+Q  +  V  C K + K
Sbjct: 179 KDPSCPWYLRASVFKRSDIWIVRKFIYTHMCSVDVVKNDHKQATSWIVSECTKLIFK 234

BLAST of Lcy05g019940 vs. NCBI nr
Match: XP_038887125.1 (uncharacterized protein LOC120077310 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-16
Identity = 64/185 (34.59%), Postives = 93/185 (50.27%), Query Frame = 0

Query: 1   MYRNRINKSNIIRITDDRDVLWFMSNIVGGMFSDICVVADNDGGDVPATISQCLGVESQ- 60
           MY    + SN+I I +D+ +LW M  +      D+CVV D+    V       L + ++ 
Sbjct: 60  MYWIGSSNSNLISIVEDKYILWLMLMLPDSPEIDLCVVVDH-VSSVAQNSQNTLYLNNES 119

Query: 61  ----QNKKY-----KIVDFIDVDSLGSSITVSEDLVFQSKDELKKSIYLPAIKNSFQLRT 120
               Q+ K+     +IVD  D D   S I +   L F SK  LKK+IY  A+KNSF+L T
Sbjct: 120 TNIDQSFKHPAGNNEIVDSQDFDVFQSGIPIRVGLPFSSKSVLKKAIYFLALKNSFELTT 179

Query: 121 IKSNHKSFVVGYENL----------------WMVRKFVDKHECPIDIVKNDHRQGRTLFV 160
            +SN  SF +  +++                W+V+KF+D H+C IDIVK+ HRQ  +  V
Sbjct: 180 TRSNKTSFEIHCKDMSCGWYLRASVYRGGGVWIVQKFIDNHKCCIDIVKDGHRQATSWIV 239

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TEC95.2e-1834.05Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7VGR48.8e-1833.33Protein FAR1-RELATED SEQUENCE 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7V1Z64.4e-1733.52CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A1S3C3004.4e-1733.33uncharacterized protein LOC103495899 OS=Cucumis melo OX=3656 GN=LOC103495899 PE=... [more]
A0A5A7VAU31.2e-1431.49MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
Match NameE-valueIdentityDescription
KAA0039579.11.1e-1734.05protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYK01721.1 prot... [more]
KAA0067552.11.8e-1733.33protein FAR1-RELATED SEQUENCE 2-like [Cucumis melo var. makuwa] >TYJ97202.1 prot... [more]
KAA0061274.19.0e-1733.52uncharacterized protein E6C27_scaffold455G001170 [Cucumis melo var. makuwa][more]
XP_008455803.19.0e-1733.33PREDICTED: uncharacterized protein LOC103495899 [Cucumis melo][more]
XP_038887125.11.5e-1634.59uncharacterized protein LOC120077310 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g019940.1Lcy05g019940.1mRNA