Lcy05g019820 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g019820
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr05: 42408521 .. 42409151 (+)
RNA-Seq Expression	Lcy05g019820
Synteny	Lcy05g019820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCACGCTCCTTTCTTCATCTTCTTCCACTTCCAACCCCAATTCCATGGGACGTCCTTCCAGAACCGGAGCTGTAATGGCAACGGCAATGGCAGTCCTGATATTGATGCTGAGTGGAAGCAATTGTAAGGTTGCTTCTCTAAGTCCTTCCAATGTCGGCAACCAGACCGTCGCCGCCGCTGCGGCATCGCTGTGGTGCGATGGCGGCACAGAAGAATGTCTCGACGGAGAAGACGACGGTGATCCGGCATTTCCAAGCTTGCAAGCCAGTAAACCTAGGGTTACTTACGGGACGGGAAGCCCGGGAAAACCTGCATGTGGTCGGCCGAATGGAGAAAGATATTATGGCTGTACCGGAAAACCACGCCCAATTCCCAAGCCCCAAAATTGTGGCACATATACTCGCAACGGCTGTAATGGTAATTAGAAGCAGAACGACCATGTCGACATGTCGTCCGCCAATTGCTCCTGTGTAATCCACTCGCTATTTATGTTGTATGAATTTATCCTACCATCGTTCTTGAAGTAAGCTTTCTACACTTCACATGGAGTTTCAAAGAATTTGCATAAATTATATTTGTTTTGCTATTAGTTTGGAAAATATCATATAAAGGGCCTGAATTGATGAAAA

mRNA sequence

ATTCACGCTCCTTTCTTCATCTTCTTCCACTTCCAACCCCAATTCCATGGGACGTCCTTCCAGAACCGGAGCTGTAATGGCAACGGCAATGGCAGTCCTGATATTGATGCTGAGTGGAAGCAATTGTAAGGTTGCTTCTCTAAGTCCTTCCAATGTCGGCAACCAGACCGTCGCCGCCGCTGCGGCATCGCTGTGGTGCGATGGCGGCACAGAAGAATGTCTCGACGGAGAAGACGACGGTGATCCGGCATTTCCAAGCTTGCAAGCCAGTAAACCTAGGGTTACTTACGGGACGGGAAGCCCGGGAAAACCTGCATGTGGTCGGCCGAATGGAGAAAGATATTATGGCTGTACCGGAAAACCACGCCCAATTCCCAAGCCCCAAAATTGTGGCACATATACTCGCAACGGCTGTAATGGTAATTAGAAGCAGAACGACCATGTCGACATGTCGTCCGCCAATTGCTCCTGTGTAATCCACTCGCTATTTATGTTGTATGAATTTATCCTACCATCGTTCTTGAAGTAAGCTTTCTACACTTCACATGGAGTTTCAAAGAATTTGCATAAATTATATTTGTTTTGCTATTAGTTTGGAAAATATCATATAAAGGGCCTGAATTGATGAAAA

Coding sequence (CDS)

ATGGGACGTCCTTCCAGAACCGGAGCTGTAATGGCAACGGCAATGGCAGTCCTGATATTGATGCTGAGTGGAAGCAATTGTAAGGTTGCTTCTCTAAGTCCTTCCAATGTCGGCAACCAGACCGTCGCCGCCGCTGCGGCATCGCTGTGGTGCGATGGCGGCACAGAAGAATGTCTCGACGGAGAAGACGACGGTGATCCGGCATTTCCAAGCTTGCAAGCCAGTAAACCTAGGGTTACTTACGGGACGGGAAGCCCGGGAAAACCTGCATGTGGTCGGCCGAATGGAGAAAGATATTATGGCTGTACCGGAAAACCACGCCCAATTCCCAAGCCCCAAAATTGTGGCACATATACTCGCAACGGCTGTAATGGTAATTAG

Protein sequence

MGRPSRTGAVMATAMAVLILMLSGSNCKVASLSPSNVGNQTVAAAAASLWCDGGTEECLDGEDDGDPAFPSLQASKPRVTYGTGSPGKPACGRPNGERYYGCTGKPRPIPKPQNCGTYTRNGCNGN

Homology

[Close]

BLAST of Lcy05g019820 vs. ExPASy TrEMBL
Match: A0A0A0LA12 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 0


Query: 1   MGRPSRTGAVMATAMAVLILMLSGSNCKVASLSPSNVGNQTVAAAAASLWCDGGTEECLD 60
           M  P+ T  ++A A+ V++  +  S+CK ASL+ SN+GN+T  AA +S WC+   +ECL 
Sbjct: 11  MATPTTT-TMVAVAIIVVVSTIGASHCKAASLN-SNLGNETTTAATSSTWCNSLDKECLI 70

Query: 61  GEDDGD---PAFPSLQASKPRVTYGTGSPGKPACGRPNGERYYGCTGKPRPIPKPQNCGT 120
           G +D +    AFPSL       T  T +  K  CGR        C  + RP P  Q C T
Sbjct: 71  GVEDDNIETSAFPSLYN-----TVRTANGQKAVCGRVGRYDNQRCLPQKRPNP-IQKCST 126

Query: 121 YTRN 122
           +TR+
Sbjct: 131 FTRS 126

[Close]

BLAST of Lcy05g019820 vs. NCBI nr
Match: KAG6607070.1 (hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.9 bits (276), Expect = 8.0e-21
Identity = 68/125 (54.40%), Postives = 80/125 (64.00%), Query Frame = 0


Query: 1   MGRPSRTGAVM----ATAMAVLILMLSGSNCKVASLSPSNVGNQTVAAAAASLWCDGGTE 60
           MG  S +GAVM    A AM V ILMLSGS+C VAS +PS+ GN TV AAAAS+WCDG  E
Sbjct: 1   MGHSSNSGAVMAAAAAAAMGVFILMLSGSHCSVASPTPSSYGNITV-AAAASMWCDGRVE 60

Query: 61  ECLDGEDDGDPAFPSLQASKPR-VTYGTGSPGKPACGRPNGERYYGCTGKPRPIPKPQNC 120
           EC+  EDDG+ AFPSL AS P+ +++ T +  KP C RP    Y  C    R   K  NC
Sbjct: 61  ECVTREDDGESAFPSLLASTPKFISFPTRNRNKPVCERPGD--YKSCFNARRTNTKNDNC 120

[Close]

BLAST of Lcy05g019820 vs. NCBI nr
Match: KAG6607071.1 (hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.7 bits (252), Expect = 4.8e-18
Identity = 62/122 (50.82%), Postives = 75/122 (61.48%), Query Frame = 0


Query: 1   MGRPSRTGAVM-ATAMAVLILMLSGSNCKVASLSPSNVGNQTVAAAAASLWCDGGTEECL 60
           MG  S +G VM A AM V IL+LSGS+C VAS +PS+ GN TV AAAAS+WCDG  EEC+
Sbjct: 1   MGHSSNSGGVMAAAAMGVFILVLSGSDCNVASPTPSSYGNNTV-AAAASMWCDGRVEECV 60

Query: 61  DGEDDGDPAFPSLQAS-KPRVTYGTGSPGKPACGRPNGERYYGCTGKPRPIPKPQNCGTY 120
             E D   AFPSLQ S +  ++  + +  K  C RP  + Y  C    R  P P NCG Y
Sbjct: 61  TREGDSASAFPSLQTSTRKYISPSSVNSNKAVCERP--DEYRSCFNPRRSNPNPNNCGRY 119

[Close]

BLAST of Lcy05g019820 vs. NCBI nr
Match: KGN57814.1 (hypothetical protein Csa_009509 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-06
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 0


Query: 1   MGRPSRTGAVMATAMAVLILMLSGSNCKVASLSPSNVGNQTVAAAAASLWCDGGTEECLD 60
           M  P+ T  ++A A+ V++  +  S+CK ASL+ SN+GN+T  AA +S WC+   +ECL 
Sbjct: 11  MATPTTT-TMVAVAIIVVVSTIGASHCKAASLN-SNLGNETTTAATSSTWCNSLDKECLI 70

Query: 61  GEDDGD---PAFPSLQASKPRVTYGTGSPGKPACGRPNGERYYGCTGKPRPIPKPQNCGT 120
           G +D +    AFPSL       T  T +  K  CGR        C  + RP P  Q C T
Sbjct: 71  GVEDDNIETSAFPSLYN-----TVRTANGQKAVCGRVGRYDNQRCLPQKRPNP-IQKCST 126

Query: 121 YTRN 122
           +TR+
Sbjct: 131 FTRS 126

[Close]

BLAST of Lcy05g019820 vs. NCBI nr
Match: KAG6607014.1 (Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 9  AVMATAMAVLILMLSGSNCKVASLSPSNVGNQTVAAAAASLWCDGGTEECLDGEDDGDPA 68
          A+MA   A+++L L+ SN   ASLS SN GN+T  A A S WCD  TEECL G+DD D +
Sbjct: 5  AMMAAVAAIVVLTLAASNGNAASLSRSNFGNET-DAGAPSTWCDRRTEECLVGDDDVDGS 64

Query: 69 -FPSLQ-ASKPRVTYGTGSPGKP 90
           F SL      R++  TG+  +P
Sbjct: 65 DFLSLAFVDVSRISGRTGNENRP 86

The following BLAST results are available for this feature:

BLAST of Lcy05g019820 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g019820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA12	1.2e-06	37.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G316270 PE=4 SV=1	[more]

BLAST of Lcy05g019820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607070.1	8.0e-21	54.40	hypothetical protein SDJN03_00412, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6607071.1	4.8e-18	50.82	hypothetical protein SDJN03_00413, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN57814.1	2.5e-06	37.90	hypothetical protein Csa_009509 [Cucumis sativus]	[more]
KAG6607014.1	1.4e-04	46.99	Protein PTST, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Lcy05g019820 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g019820.1	Lcy05g019820.1	mRNA