Lcy05g018760 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g018760
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Cysteine-rich RLK (Receptor-like protein kinase) 8
Location	Chr05: 37994183 .. 37996840 (+)
RNA-Seq Expression	Lcy05g018760
Synteny	Lcy05g018760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTGAATGAACTTGCGTCCTATCGGCCATTCTGTAATTGTGGCAAATGTTCGTGTGAAGGAGTTCAAAAGCTTGTTGACTATTTTCAAATAGAATATATTATGGCATTCCTTATGGGTTTGAATGAACCATTCAATCAAATTCGTACTCAATTGCTTCTCATGGAGCCTGAACCAACAATTCAACGAGCATTCTCCTTAGTAGCACAAGAAGTGGAACAAAGAGTTTCTTCAACACTGCCAACGACTAACTCCACTAATTCGGTAAATTCCTCGACTACTCTTCTCGTTAAAAGTTCTTCTACTTCTCGAAATTAGTCAAAATCTACTAAGAAGAAAGAAAGTTCATTTTGTACCTCATTGCAATGTTCGAGGACATATTGTGGATCGTTGTTACAAGATAAATGGATACCCCTTGGGTATCGCAATCAGAAGACCAATTCCAATTCATCGAAGTCAGAAACCACTTCTTCTGCGCGATTCCTTATCTGCTCTAACTACTTTGCAATGCCAGGGTTTATTGACTGCTCTCCAAAGTCATCTTACTAAAATGGCTTCTTCTGATACTTCTGATACTTCATCGTCTTCTCATGTAGCAAGTATTGTTCCAATTTCTCATGATTTTTCTTCTCCATCATGGGTACTTGATTCAAGAGCATCCTCGCATCTTTCCTACTTGAGAGATTTTTTTCACTTGTTTGACACCAATTCAAAATAAGTCTGTTACTTTGCCTAATCAACAAGTTTGTTACTTTGCCTAATCAAACTCATATTTCAGTTGATTTTGTTGGAGATATTCAGCTAAACCGTCATATATTGCTCAAGAATGTGATGTTTATACCGTTCTTTACCTTTAATCTGATATCTATCAATGTGCTAACTACTGATCAACCTCTTATTGTCAAGTTTGTTGAGAACTCATGTTTTCTTCAGGATAAGTTCTTTTTGAAGACAATTGGGAAGGCTGACTTTTGGCCAAGACTATTTCTGTTGAGAGTTGATATTTTTAAGCATTCTTTGTCTACTACTACTATGATAAGACCAATTTATTATACACTTAGAATCTCCCAATTTGCTTAACTTAGTTGAATTCCTTGCGAAAAATGCTTTAAAATGAGTATAATATGTCTATAGGTCTTCACTGGAGCTTTGGAAGCGATTCGGGGCTTAAATGAGCAAAACCAAAGCGTGAAATGACCATTCTGCCCTTGGTACTGTCACAACGTCGATACGCTGCCATTGAAGGGTCGAGACACTGCTAAAATAAGGAAATTTTGTGGGCGCCAAGCTGAAGCTACACCGTCGAGACGCTGCACCTATAGCGTCTCGACGCTATGTTGATCCGAGAGATTCATTCCATATATGAAGGCCTAGCGTCGCGACGCTGTGTCCTAGCGTCTCGACACTAGGCAGTTTCCAAAATCGAATTTTTTCCAATTTTGGCTGAAATTTTCCTTGTTTGAAAACCCAATTCAGCACCATTCTACCATGAATTGAAGGCCAAGAAACTCTATAAATAGAGGTCTTTGGTGTAGGTTTAGAATCATCCCTCAATACAATATTGTAGCCACCTTTCTCATTACTTTTCTAGAGTTCTTTTAAGTTTTCTTAGTCTAAGGGTCGGTTGATCGAGCCTCGAGCTTGGAGGTGCTTGTCTATAGCCAACTAAGCTCGGATCGTTGTAATCGGGACCTTGGTTTGTAAGTTTGATTCAATTTTATGAGATTTCCATTTTTCATTACTTAGTTAATTGTCTTTATGATTTTAGTTGTTTGCATACAAGTTTAGATTGTGGTAGGAAAGATTGACAACCTTGATTGTGCCCTGTCTAAATTTACTTGCTAAATCTAAGTAGCAAATAGGCTAACGTTATGATATTACGCATGCGTCCCTTGAACTAAATGATTTAATCAATTGTAATTGTGGTTTGTTGCCCGTTGCATGTGAATTAATTCGGCTAGATCTCAATGCGGTTTAGATTAGTTAAATAGGCCAATTAATTAATTTAAACTAGAATCAAACTTAGCGTTTGCATGTTTGTGATAGTTGGATCATGGCTCTCGGTTTGTTGCCGGAGTACGCCAGACTTAGATAGTTAATTAAATATCAATTGATAATCGATGAATGAAATTAATCAAACTTAACGCCGAGTTCAACCCCGATTACAGTGATCCTCGTGGTACGATCAACTAACCCCACCTTTACTTTCCTTGCATTTAATTTTCCTTATTTATTTTCCCACTTTTACTCTATGTCTTAATCTTTTATCCATAAACCCCCGTTTTTGGTTACCTCAAAAACACAAAAGAATTTAGAAATAAACCGATTGTTCCCTGTGATCGACTCCGACCACTACTGCTACAAGTTAGCTTTAGGAATCGTGGATTATAAATTTATTTGACAAGAGACCGCGAAAATCTCTTCCGTCATTTTGTAACTCGGTATCTTGGCATGATAGACTTGGTCATCCCTCCCCCAAACACCTTGTTGCTTTAAAAGATTTGTAACTCGGTACCTGATGGTTATATCAATACAGATGTTTCACAAGCTGCTATTCCTAACGTAGTAGAAAGTCTCCTTGAAGCTTCTAATACCATTGACAACTCTAATGATGACAAAACTTGTGTCCCTCGACGCTCAAATAGGCAAATCTAA

mRNA sequence

ATGTTGTTGAATGAACTTGCGTCCTATCGGCCATTCTGTAATTGTGGCAAATGTTCGTGTGAAGGAGTTCAAAAGCTTGTTGACTATTTTCAAATAGAATATATTATGGCATTCCTTATGGGTTTGAATGAACCATTCAATCAAATTCGTACTCAATTGCTTCTCATGGAGCCTGAACCAACAATTCAACGAGCATTCTCCTTAGTAGCACAAGAAGTGGAACAAAGAGTTTCTTCAACACTGCCAACGACTAACTCCACTAATTCGATTTGTAACTCGGTACCTGATGGTTATATCAATACAGATGTTTCACAAGCTGCTATTCCTAACGTAGTAGAAAGTCTCCTTGAAGCTTCTAATACCATTGACAACTCTAATGATGACAAAACTTGTGTCCCTCGACGCTCAAATAGGCAAATCTAA

Coding sequence (CDS)

ATGTTGTTGAATGAACTTGCGTCCTATCGGCCATTCTGTAATTGTGGCAAATGTTCGTGTGAAGGAGTTCAAAAGCTTGTTGACTATTTTCAAATAGAATATATTATGGCATTCCTTATGGGTTTGAATGAACCATTCAATCAAATTCGTACTCAATTGCTTCTCATGGAGCCTGAACCAACAATTCAACGAGCATTCTCCTTAGTAGCACAAGAAGTGGAACAAAGAGTTTCTTCAACACTGCCAACGACTAACTCCACTAATTCGATTTGTAACTCGGTACCTGATGGTTATATCAATACAGATGTTTCACAAGCTGCTATTCCTAACGTAGTAGAAAGTCTCCTTGAAGCTTCTAATACCATTGACAACTCTAATGATGACAAAACTTGTGTCCCTCGACGCTCAAATAGGCAAATCTAA

Protein sequence

MLLNELASYRPFCNCGKCSCEGVQKLVDYFQIEYIMAFLMGLNEPFNQIRTQLLLMEPEPTIQRAFSLVAQEVEQRVSSTLPTTNSTNSICNSVPDGYINTDVSQAAIPNVVESLLEASNTIDNSNDDKTCVPRRSNRQI

Homology

[Close]

BLAST of Lcy05g018760 vs. ExPASy TrEMBL
Match: A0A6J1D5E3 (uncharacterized protein LOC111017196 OS=Momordica charantia OX=3673 GN=LOC111017196 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 60/128 (46.88%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 2   LLNELASYRPFCNCGKCSCEGVQKLVDYFQIEYIMAFLMGLNEPFNQIRTQLLLMEPEPT 61
           L  ELA+YRP C+CG+C+C GV+ LV+YFQ EY+M FLMGLN+ F+QIR  LLLM P PT
Sbjct: 104 LWTELAAYRPNCSCGRCTCGGVKSLVEYFQTEYVMCFLMGLNDSFSQIRAXLLLMXPPPT 163

Query: 62  IQRAFSLVAQEVEQRVSSTLPTTNSTNSICNSVPDGYINTDVSQAAIPNVVESLLEASNT 121
           I  AF L+AQEV+QR  S +   NS+ S       G  N + S     N+  S   ++ +
Sbjct: 164 INXAFXLIAQEVQQRXISXISXANSSASSTAFXVXGTQNXNSS-----NLSNSSTSSNRS 223

Query: 122 IDNSNDDK 130
           + N    K
Sbjct: 224 LSNQGKRK 226

[Close]

BLAST of Lcy05g018760 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.1e-20
Identity = 57/103 (55.34%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 2   LLNELASYRPFCNCGKCSCEGVQKLVDYFQIEYIMAFLMGLNEPFNQIRTQLLLMEPEPT 61
           L +ELA YRP C+CG+CS  GV+ +  ++Q EY+MAFLMGLN  F+QIR QLLLMEP PT
Sbjct: 161 LWSELALYRPACSCGRCSYGGVKSIEAHYQQEYVMAFLMGLNVSFSQIRAQLLLMEPAPT 220

Query: 62  IQRAFSLVAQEVEQR-----------VSSTLPTTNSTNSICNS 94
           I RAF+LVAQE++QR            S+   T+NS+NS  NS
Sbjct: 221 INRAFALVAQEMQQRSISLPSVTSPTASAVRATSNSSNSRLNS 263

[Close]

BLAST of Lcy05g018760 vs. ExPASy TrEMBL
Match: A0A5J5BIH5 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_023418 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-19
Identity = 50/85 (58.82%), Postives = 69/85 (81.18%), Query Frame = 0


Query: 5   ELASYRPFCNCGKCSCEGVQKLVDYFQIEYIMAFLMGLNEPFNQIRTQLLLMEPEPTIQR 64
           EL++YRP C+CGKCSC GV+ L D+ Q+EYIM+FLMGL++ F+Q+R QLLLM+P P I R
Sbjct: 110 ELSNYRPNCSCGKCSCGGVKNLNDHHQMEYIMSFLMGLDDSFSQVRGQLLLMDPIPPINR 169

Query: 65  AFSLVAQEVEQRVSSTLPTTNSTNS 90
            FSL+ QE +QR+  T P+++S+NS
Sbjct: 170 VFSLIVQEEQQRM--TNPSSDSSNS 192

[Close]

BLAST of Lcy05g018760 vs. ExPASy TrEMBL
Match: A0A5J5C4X6 (Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_001883 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.9e-19
Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 0


Query: 5   ELASYRPFCNCGKCSCEGVQKLVDYFQIEYIMAFLMGLNEPFNQIRTQLLLMEPEPTIQR 64
           EL++YRP C+CGKCSC GV+ + D+ Q+EYIM+FLMGL++ F+Q+R QLLLM+P P I R
Sbjct: 98  ELSNYRPNCSCGKCSCGGVKNINDHHQMEYIMSFLMGLDDSFSQVRGQLLLMDPMPPINR 157

Query: 65  AFSLVAQEVEQRVSSTLPTTNSTNSICNSVPDGYINTDVSQAAIPNVVESLLEASNTIDN 124
            FSL+ QE +QR   T P+++S+NS         + TDV+++       S    S+   N
Sbjct: 158 VFSLIVQEEQQR--RTNPSSDSSNS--TGTMAFVVKTDVNKSGGSGPQNSQNSNSSASKN 217

Query: 125 SNDDK 130
              DK
Sbjct: 218 QKKDK 218

[Close]

BLAST of Lcy05g018760 vs. ExPASy TrEMBL
Match: A0A6J1E1U3 (uncharacterized protein LOC111025199 OS=Momordica charantia OX=3673 GN=LOC111025199 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.9e-19
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 2   LLNELASYRPFCNCGKCSCEGVQKLVDYFQIEYIMAFLMGLNEPFNQIRTQLLLMEPEPT 61
           L  ELASY   C C KCSC GV+ + +YFQ+EY+M FLMGLN+ F+QIR QLLLMEP P+
Sbjct: 62  LWTELASYYSSCTCSKCSCGGVKAIGEYFQMEYVMCFLMGLNDSFSQIRAQLLLMEPAPS 121

Query: 62  IQRAFSLVAQEVEQRVSSTLPTTNST 88
           I  AF+L+AQEV+Q   S+    N+T
Sbjct: 122 INWAFALIAQEVQQCAISSPSLANAT 147

[Close]

BLAST of Lcy05g018760 vs. NCBI nr
Match: XP_038896588.1 (uncharacterized protein LOC120084843 [Benincasa hispida])

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-21
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1   MLLNELASYRPFCNCGKCSCEGVQKLVDYFQIEYIMAFLMGLNEPFNQIRTQLLLMEPEP 60
           ML NEL SY P C+CGKC+C GV+ L  YFQ EY+MAFLMGLN+    IR+QLLLMEPEP
Sbjct: 79  MLWNELISYCPSCSCGKCTCGGVKNLQTYFQTEYVMAFLMGLNDSSAPIRSQLLLMEPEP 138

Query: 61  TIQRAFSLVAQEVEQRVSST 81
           +I RAFSLVAQE++Q+  S+
Sbjct: 139 SINRAFSLVAQEIDQKAYSS 158

[Close]

BLAST of Lcy05g018760 vs. NCBI nr
Match: XP_038905564.1 (uncharacterized protein LOC120091546 [Benincasa hispida])

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-20
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 2   LLNELASYRPFCNCGKCSCEGVQKLVDYFQIEYIMAFLMGLNEPFNQIRTQLLLMEPEPT 61
           L NELASYRP C+CG+C+C+GV+ L  Y Q E++M FLMGLNE F+QI TQLLLME EP+
Sbjct: 104 LWNELASYRPSCSCGRCTCDGVKDLNTYLQTEHVMTFLMGLNESFSQIHTQLLLMELEPS 163

Query: 62  IQRAFSLVAQEVEQRV---SSTLPTTNSTNSICNSVPDGYINTDVSQAAIPN 111
           I +AFS V QEVEQR      T+ +  ST +    V +   N + +Q+++ N
Sbjct: 164 INKAFSSVIQEVEQRTIPSYQTIVSNQSTQNAALLVKNTSSNANSNQSSLSN 215

[Close]

BLAST of Lcy05g018760 vs. NCBI nr
Match: XP_022148562.1 (uncharacterized protein LOC111017196 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-20
Identity = 60/128 (46.88%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 2   LLNELASYRPFCNCGKCSCEGVQKLVDYFQIEYIMAFLMGLNEPFNQIRTQLLLMEPEPT 61
           L  ELA+YRP C+CG+C+C GV+ LV+YFQ EY+M FLMGLN+ F+QIR  LLLM P PT
Sbjct: 104 LWTELAAYRPNCSCGRCTCGGVKSLVEYFQTEYVMCFLMGLNDSFSQIRAXLLLMXPPPT 163

Query: 62  IQRAFSLVAQEVEQRVSSTLPTTNSTNSICNSVPDGYINTDVSQAAIPNVVESLLEASNT 121
           I  AF L+AQEV+QR  S +   NS+ S       G  N + S     N+  S   ++ +
Sbjct: 164 INXAFXLIAQEVQQRXISXISXANSSASSTAFXVXGTQNXNSS-----NLSNSSTSSNRS 223

Query: 122 IDNSNDDK 130
           + N    K
Sbjct: 224 LSNQGKRK 226

[Close]

BLAST of Lcy05g018760 vs. NCBI nr
Match: XP_038875043.1 (uncharacterized protein LOC120067569 [Benincasa hispida])

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-20
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1   MLLNELASYRPFCNCGKCSCEGVQKLVDYFQIEYIMAFLMGLNEPFNQIRTQLLLMEPEP 60
           ML NEL SYRP C+CGK +C  V+ L  YFQ EY+MAFLMGLN+    IR+QLLLMEPEP
Sbjct: 165 MLWNELISYRPSCSCGKYTCGSVKNLQTYFQTEYVMAFLMGLNDSSASIRSQLLLMEPEP 224

Query: 61  TIQRAFSLVAQEVEQRVSSTLP 83
           +I RAFSLV QE++Q+  S+ P
Sbjct: 225 SINRAFSLVLQEIDQKAFSSSP 246

[Close]

BLAST of Lcy05g018760 vs. NCBI nr
Match: XP_038904477.1 (uncharacterized protein LOC120090845 [Benincasa hispida])

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-20
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 2   LLNELASYRPFCNCGKCSCEGVQKLVDYFQIEYIMAFLMGLNEPFNQIRTQLLLMEPEPT 61
           L NEL SYRP C+CGKC+C GV+ L  YFQ EY++AFLMGLN+    IR+QLLLMEP+PT
Sbjct: 104 LWNELISYRPSCSCGKCTCGGVKNLQTYFQTEYVIAFLMGLNDSSAPIRSQLLLMEPKPT 163

Query: 62  IQRAFSLVAQEVEQRV--SSTLPTTNSTNSICNSVPDGYINTDVSQAAIPNVVESLLEAS 121
           I RAFSLVAQE++Q+   SS     +S+N+    V +G   +  S   +P+       + 
Sbjct: 164 INRAFSLVAQEIDQKAYSSSFGNAISSSNATALLVKNG---SSASHQTVPSY------SH 223

Query: 122 NTIDNSNDDK 130
           NT  N   D+
Sbjct: 224 NTNQNKKKDR 224

The following BLAST results are available for this feature:

BLAST of Lcy05g018760 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g018760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5E3	1.2e-20	46.88	uncharacterized protein LOC111017196 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DNP7	8.1e-20	55.34	uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5J5BIH5	3.1e-19	58.82	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_023418 PE=4 SV=1	[more]
A0A5J5C4X6	8.9e-19	45.60	Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
A0A6J1E1U3	8.9e-19	58.14	uncharacterized protein LOC111025199 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Lcy05g018760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896588.1	5.2e-21	66.25	uncharacterized protein LOC120084843 [Benincasa hispida]	[more]
XP_038905564.1	1.5e-20	51.79	uncharacterized protein LOC120091546 [Benincasa hispida]	[more]
XP_022148562.1	2.6e-20	46.88	uncharacterized protein LOC111017196 [Momordica charantia]	[more]
XP_038875043.1	4.4e-20	63.41	uncharacterized protein LOC120067569 [Benincasa hispida]	[more]
XP_038904477.1	4.4e-20	48.46	uncharacterized protein LOC120090845 [Benincasa hispida]	[more]

BLAST of Lcy05g018760 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 15..88
None	No IPR available	PANTHER	PTHR34222:SF25	SUBFAMILY NOT NAMED	coord: 15..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g018760.1	Lcy05g018760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding