Lcy05g018600 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g018600
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	VOC domain-containing protein
Location	Chr05: 37068699 .. 37068926 (-)
RNA-Seq Expression	Lcy05g018600
Synteny	Lcy05g018600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGATGGAGGAGAAACTGAAGGAATTGGGAGTGACATACATGAGGAGGACATTGGAAGAGGAGAAGAAAGAATCGATTGAACAGCTTTTCTTCAACGATCCTGACGGATTCATGATCGAGATCTGCAACTGCGAGAATCTCAAGGTGGGTCCGACGGGTTCCTTCGGCAGGATTAGGCTTCCGGTCGGTCGCCATAACCCTCAATTGGAATCGAAAGAATAG

mRNA sequence

ATGGAAGCGATGGAGGAGAAACTGAAGGAATTGGGAGTGACATACATGAGGAGGACATTGGAAGAGGAGAAGAAAGAATCGATTGAACAGCTTTTCTTCAACGATCCTGACGGATTCATGATCGAGATCTGCAACTGCGAGAATCTCAAGGTGGGTCCGACGGGTTCCTTCGGCAGGATTAGGCTTCCGGTCGGTCGCCATAACCCTCAATTGGAATCGAAAGAATAG

Coding sequence (CDS)

ATGGAAGCGATGGAGGAGAAACTGAAGGAATTGGGAGTGACATACATGAGGAGGACATTGGAAGAGGAGAAGAAAGAATCGATTGAACAGCTTTTCTTCAACGATCCTGACGGATTCATGATCGAGATCTGCAACTGCGAGAATCTCAAGGTGGGTCCGACGGGTTCCTTCGGCAGGATTAGGCTTCCGGTCGGTCGCCATAACCCTCAATTGGAATCGAAAGAATAG

Protein sequence

MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGPTGSFGRIRLPVGRHNPQLESKE

Homology

[Close]

BLAST of Lcy05g018600 vs. ExPASy TrEMBL
Match: A0A6J1D9H2 (uncharacterized protein LOC111018263 OS=Momordica charantia OX=3673 GN=LOC111018263 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.5e-28
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGPTGSFGRI 60
           MEAMEEKLKELGV YMRRTLEEEK ESIEQLFFNDPDGFMIEICNCENLKV P GS G+I
Sbjct: 119 MEAMEEKLKELGVKYMRRTLEEEKGESIEQLFFNDPDGFMIEICNCENLKVVPVGSSGKI 178

Query: 61  RLPVGRHNPQLESKE 76
           RLP GRHNP LES +
Sbjct: 179 RLPTGRHNPPLESNQ 193

[Close]

BLAST of Lcy05g018600 vs. ExPASy TrEMBL
Match: A0A6J1GPD4 (lactoylglutathione lyase OS=Cucurbita moschata OX=3662 GN=LOC111455922 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-26
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGPTGSFGRI 60
           MEAMEE+LKELGV YMRRTL+EE  E IEQLFFNDPDGFMIEICNCENLKV P GS GRI
Sbjct: 126 MEAMEERLKELGVKYMRRTLDEENGELIEQLFFNDPDGFMIEICNCENLKVVPAGSSGRI 185

Query: 61  RLPVGRHNPQLES 74
           RLP GRHNP LES
Sbjct: 186 RLPAGRHNPPLES 198

[Close]

BLAST of Lcy05g018600 vs. ExPASy TrEMBL
Match: A0A6J1JW68 (lactoylglutathione lyase OS=Cucurbita maxima OX=3661 GN=LOC111488425 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.1e-26
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGPTGSFGRI 60
           MEAMEE+LKEL V YMRRTL+EE  ESIEQLFFNDPDGFMIEICNCENLKV P GS GRI
Sbjct: 126 MEAMEERLKELEVKYMRRTLDEENGESIEQLFFNDPDGFMIEICNCENLKVVPAGSSGRI 185

Query: 61  RLPVGRHNPQLES 74
           RLP GRHNP LES
Sbjct: 186 RLPAGRHNPPLES 198

[Close]

BLAST of Lcy05g018600 vs. ExPASy TrEMBL
Match: A0A5A7UYM4 (Metallothiol transferase FosB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00230 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKK-ESIEQLFFNDPDGFMIEICNCENLKVGPTGSFGR 60
           MEAMEE+LKELGV YMRRTLEEE+K E+IEQLFFNDPDGFMIEICNCENLK+ P GS G+
Sbjct: 124 MEAMEERLKELGVKYMRRTLEEEEKGETIEQLFFNDPDGFMIEICNCENLKLVPAGSSGK 183

Query: 61  IRLPVGRHNPQLE 73
           IRLP GRHNP LE
Sbjct: 184 IRLPAGRHNPPLE 196

[Close]

BLAST of Lcy05g018600 vs. ExPASy TrEMBL
Match: A0A0A0K9N2 (VOC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G420800 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKK-ESIEQLFFNDPDGFMIEICNCENLKVGPTGSFGR 60
           MEAMEE+LKELGV YMRRTLEEE+K E+IEQLFFNDPDGFMIEICNCENLK+ P GS G+
Sbjct: 183 MEAMEERLKELGVKYMRRTLEEEEKGETIEQLFFNDPDGFMIEICNCENLKLVPAGSSGK 242

Query: 61  IRLPVGRHNPQLE 73
           IRLP GRHNP LE
Sbjct: 243 IRLPAGRHNPPLE 255

[Close]

BLAST of Lcy05g018600 vs. NCBI nr
Match: XP_022149982.1 (uncharacterized protein LOC111018263 [Momordica charantia])

HSP 1 Score: 134.0 bits (336), Expect = 5.2e-28
Identity = 65/75 (86.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGPTGSFGRI 60
           MEAMEEKLKELGV YMRRTLEEEK ESIEQLFFNDPDGFMIEICNCENLKV P GS G+I
Sbjct: 119 MEAMEEKLKELGVKYMRRTLEEEKGESIEQLFFNDPDGFMIEICNCENLKVVPVGSSGKI 178

Query: 61  RLPVGRHNPQLESKE 76
           RLP GRHNP LES +
Sbjct: 179 RLPTGRHNPPLESNQ 193

[Close]

BLAST of Lcy05g018600 vs. NCBI nr
Match: KAG6575712.1 (Lactoylglutathione lyase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 7.5e-27
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGPTGSFGRI 60
           MEAMEE+LKELGV YMRRTL+EE  ESIEQLFFNDPDGFMIEICNCENLKV P GS GRI
Sbjct: 125 MEAMEERLKELGVKYMRRTLDEENGESIEQLFFNDPDGFMIEICNCENLKVVPAGSSGRI 184

Query: 61  RLPVGRHNPQLES 74
           RLP GRHNP LES
Sbjct: 185 RLPAGRHNPPLES 197

[Close]

BLAST of Lcy05g018600 vs. NCBI nr
Match: XP_023548789.1 (lactoylglutathione lyase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.2 bits (326), Expect = 7.5e-27
Identity = 63/73 (86.30%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGPTGSFGRI 60
           MEAMEE+LKELGV YMRRTL+EE  ESIEQLFFNDPDGFMIEICNCENLKV P GS GRI
Sbjct: 126 MEAMEERLKELGVKYMRRTLDEENGESIEQLFFNDPDGFMIEICNCENLKVVPAGSSGRI 185

Query: 61  RLPVGRHNPQLES 74
           RLP GRHNP LES
Sbjct: 186 RLPAGRHNPPLES 198

[Close]

BLAST of Lcy05g018600 vs. NCBI nr
Match: XP_022953340.1 (lactoylglutathione lyase [Cucurbita moschata])

HSP 1 Score: 127.9 bits (320), Expect = 3.7e-26
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGPTGSFGRI 60
           MEAMEE+LKELGV YMRRTL+EE  E IEQLFFNDPDGFMIEICNCENLKV P GS GRI
Sbjct: 126 MEAMEERLKELGVKYMRRTLDEENGELIEQLFFNDPDGFMIEICNCENLKVVPAGSSGRI 185

Query: 61  RLPVGRHNPQLES 74
           RLP GRHNP LES
Sbjct: 186 RLPAGRHNPPLES 198

[Close]

BLAST of Lcy05g018600 vs. NCBI nr
Match: XP_022991929.1 (lactoylglutathione lyase [Cucurbita maxima])

HSP 1 Score: 127.1 bits (318), Expect = 6.4e-26
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGPTGSFGRI 60
           MEAMEE+LKEL V YMRRTL+EE  ESIEQLFFNDPDGFMIEICNCENLKV P GS GRI
Sbjct: 126 MEAMEERLKELEVKYMRRTLDEENGESIEQLFFNDPDGFMIEICNCENLKVVPAGSSGRI 185

Query: 61  RLPVGRHNPQLES 74
           RLP GRHNP LES
Sbjct: 186 RLPAGRHNPPLES 198

[Close]

BLAST of Lcy05g018600 vs. TAIR 10
Match: AT2G28420.1 (Lactoylglutathione lyase / glyoxalase I family protein )

HSP 1 Score: 91.3 bits (225), Expect = 3.6e-19
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGPTGSFGRI 60
           MEA+E++LKE+ V Y++RT+ +EK  +I+QLFFNDPDGFM+EICNCENL++ P  S   I
Sbjct: 99  MEALEKRLKEVKVKYIKRTVGDEKDAAIDQLFFNDPDGFMVEICNCENLELVPCHSADAI 158

Query: 61  RLPVGRHNP 70
           RLP  RH P
Sbjct: 159 RLPEDRHAP 167

[Close]

BLAST of Lcy05g018600 vs. TAIR 10
Match: AT1G15380.1 (Lactoylglutathione lyase / glyoxalase I family protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-10
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGP 54
           M  +E+KL+E+G+ Y+ R L EE    ++QLFF+DPDGFMIEICNC++L V P
Sbjct: 91  MGVVEKKLEEMGIDYV-RALVEEGGIQVDQLFFHDPDGFMIEICNCDSLPVVP 142

[Close]

BLAST of Lcy05g018600 vs. TAIR 10
Match: AT1G15380.2 (Lactoylglutathione lyase / glyoxalase I family protein )

HSP 1 Score: 62.4 bits (150), Expect = 1.8e-10
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGP 54
           M  +E+KL+E+G+ Y+ R L EE    ++QLFF+DPDGFMIEICNC++L V P
Sbjct: 91  MGVVEKKLEEMGIDYV-RALVEEGGIQVDQLFFHDPDGFMIEICNCDSLPVVP 142

[Close]

BLAST of Lcy05g018600 vs. TAIR 10
Match: AT1G80160.1 (Lactoylglutathione lyase / glyoxalase I family protein )

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-10
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGP 54
           MEA+E+KLKE+ + Y+R  +EE   + ++QLFF+DPD FMIEICNC++L V P
Sbjct: 91  MEAVEKKLKEMEIEYVRAVVEEGGIQ-VDQLFFHDPDAFMIEICNCDSLPVIP 142

[Close]

BLAST of Lcy05g018600 vs. TAIR 10
Match: AT1G80160.2 (Lactoylglutathione lyase / glyoxalase I family protein )

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-10
Identity = 30/53 (56.60%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1   MEAMEEKLKELGVTYMRRTLEEEKKESIEQLFFNDPDGFMIEICNCENLKVGP 54
           MEA+E+KLKE+ + Y+R  +EE   + ++QLFF+DPD FMIEICNC++L V P
Sbjct: 65  MEAVEKKLKEMEIEYVRAVVEEGGIQ-VDQLFFHDPDAFMIEICNCDSLPVIP 116

The following BLAST results are available for this feature:

BLAST of Lcy05g018600 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g018600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9H2	2.5e-28	86.67	uncharacterized protein LOC111018263 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1GPD4	1.8e-26	84.93	lactoylglutathione lyase OS=Cucurbita moschata OX=3662 GN=LOC111455922 PE=4 SV=1	[more]
A0A6J1JW68	3.1e-26	84.93	lactoylglutathione lyase OS=Cucurbita maxima OX=3661 GN=LOC111488425 PE=4 SV=1	[more]
A0A5A7UYM4	1.5e-25	83.56	Metallothiol transferase FosB OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0A0K9N2	1.5e-25	83.56	VOC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G420800 PE=4 SV...	[more]

BLAST of Lcy05g018600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149982.1	5.2e-28	86.67	uncharacterized protein LOC111018263 [Momordica charantia]	[more]
KAG6575712.1	7.5e-27	86.30	Lactoylglutathione lyase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023548789.1	7.5e-27	86.30	lactoylglutathione lyase [Cucurbita pepo subsp. pepo]	[more]
XP_022953340.1	3.7e-26	84.93	lactoylglutathione lyase [Cucurbita moschata]	[more]
XP_022991929.1	6.4e-26	84.93	lactoylglutathione lyase [Cucurbita maxima]	[more]

BLAST of Lcy05g018600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28420.1	3.6e-19	60.87	Lactoylglutathione lyase / glyoxalase I family protein	[more]
AT1G15380.1	1.8e-10	56.60	Lactoylglutathione lyase / glyoxalase I family protein	[more]
AT1G15380.2	1.8e-10	56.60	Lactoylglutathione lyase / glyoxalase I family protein	[more]
AT1G80160.1	2.4e-10	56.60	Lactoylglutathione lyase / glyoxalase I family protein	[more]
AT1G80160.2	2.4e-10	56.60	Lactoylglutathione lyase / glyoxalase I family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029068	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	GENE3D	3.10.180.10		coord: 1..46 e-value: 4.9E-7 score: 32.1
IPR029068	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	SUPERFAMILY	54593	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	coord: 2..46
None	No IPR available	PANTHER	PTHR46142	FAMILY NOT NAMED	coord: 1..72
None	No IPR available	PANTHER	PTHR46142:SF8	EXPRESSED PROTEIN	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g018600.1	Lcy05g018600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0016740	transferase activity