Lcy05g018260 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g018260
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein PNS1-like
Location	Chr05: 35156031 .. 35157010 (+)
RNA-Seq Expression	Lcy05g018260
Synteny	Lcy05g018260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGTAGCCGTAGCCGTGTTGGTGATCATTTTTTGACAATTCGGAGACTGCAGTCGGCTTCTAATACCCATCATATTCACCTCGGGAAGTGGTACCCGCCATTGTTGGCTTCTATTGGGAGCTCTGGAATCATTGCCTTTTCATGGCAGGTCTTCTCTGGCTATTCCCCTACTATGGCCTTTAAGACAGACTTTTGGTTGAGCCACGTACTATCACTCGCTTCCGGCATTTTTCTTTGTCATTGTTGGATCTGTTGGCAATTTAGCAGCAGGAGTAATTCTCATAGTTTCTTCCATAATTCTGTCGGGATACATCTGTTGGATCAATCACCAGTTGACCTACACGACTAAACTTCTATCGATTACAAATTACCCTCCAAAAACACTCCAATCTTGGTCATTGGATCGATTCTTTACGCATCTTTCTTGGTCATTGGCATCGGGGGAGCAATTGTAATTAGGTCTGGTTTTAAAGCATTGTTCATAGCAATAATACTGTTGAGCCTAACTTGGGCACTGCAGGTCATCAAAAACATAGTGCAAGTTACAATCTCGCACATAAAGTACCTGAATTTAGCTCGGAAGGGAGACAAGGACATATGAGCAGCTTTCTACGACACATTGAAGCGTTCAGTTGGAATTATTTCTCTTGGCTCAGCTATCAACCCCTTATCAGCCTCATCCATGTATCTGCCCCTGCCATGAGGTTGATGGCAGGAGGCTCAGACGAGTTCCTTTTCTCCTGTGCACACTGCTGCTCAGGGATGGCTTTGATGTTGACAAGACGTGGAAATAGGTGGGCTTTCGTCCACGTCAGCGTTTACAGTAAAGGAATTGTGCAGGCTTCAAAAGATACTTGGGATGCGTTCAAGATGGTGCATTTGGACATTGTCATTCACCCCAATCTCACCGTGACCTACATCCCCTGGCCTGCATCCCATGTAGGGTTTCGGGTGGTGCAATCGGCAGCATTATAA

mRNA sequence

ATGTCTGGTAGCCGTAGCCGTGTTGGTGATCATTTTTTGACAATTCGGAGACTGCAGTCGGCTTCTAATACCCATCATATTCACCTCGGGAAGTGGTACCCGCCATTGTTGGCTTCTATTGGGAGCTCTGGAATCATTGCCTTTTCATGGCAGGTCTTCTCTGGCTATTCCCCTACTATGGCCTTTAAGACAGACTTTTGGTTGAGCCACGTACTATCACTCGCTTCCGGCATTTTTCTTTGTCATTGTTGGATCTGTTGGCAATTTAGCAGCAGGAGTCATCAAAAACATAGTGCAAGTTACAATCTCGCACATAAAGTACCTGAATTTAGCTCGGAAGGGAGACAAGGACATATGAGCAGCTTTCTACGACACATTGAAGCGTTCAGTTGGAATTATTTCTCTTGGCTCAGCTATCAACCCCTTATCAGCCTCATCCATGTATCTGCCCCTGCCATGAGGTTGATGGCAGGAGGCTCAGACGAGTTCCTTTTCTCCTGTGCACACTGCTGCTCAGGGATGGCTTTGATGTTGACAAGACGTGGAAATAGGTGGGCTTTCGTCCACGTCAGCGTTTACAGTAAAGGAATTGTGCAGGCTTCAAAAGATACTTGGGATGCGTTCAAGATGGTGCATTTGGACATTGTCATTCACCCCAATCTCACCGTGACCTACATCCCCTGGCCTGCATCCCATGTAGGGTTTCGGGTGGTGCAATCGGCAGCATTATAA

Coding sequence (CDS)

ATGTCTGGTAGCCGTAGCCGTGTTGGTGATCATTTTTTGACAATTCGGAGACTGCAGTCGGCTTCTAATACCCATCATATTCACCTCGGGAAGTGGTACCCGCCATTGTTGGCTTCTATTGGGAGCTCTGGAATCATTGCCTTTTCATGGCAGGTCTTCTCTGGCTATTCCCCTACTATGGCCTTTAAGACAGACTTTTGGTTGAGCCACGTACTATCACTCGCTTCCGGCATTTTTCTTTGTCATTGTTGGATCTGTTGGCAATTTAGCAGCAGGAGTCATCAAAAACATAGTGCAAGTTACAATCTCGCACATAAAGTACCTGAATTTAGCTCGGAAGGGAGACAAGGACATATGAGCAGCTTTCTACGACACATTGAAGCGTTCAGTTGGAATTATTTCTCTTGGCTCAGCTATCAACCCCTTATCAGCCTCATCCATGTATCTGCCCCTGCCATGAGGTTGATGGCAGGAGGCTCAGACGAGTTCCTTTTCTCCTGTGCACACTGCTGCTCAGGGATGGCTTTGATGTTGACAAGACGTGGAAATAGGTGGGCTTTCGTCCACGTCAGCGTTTACAGTAAAGGAATTGTGCAGGCTTCAAAAGATACTTGGGATGCGTTCAAGATGGTGCATTTGGACATTGTCATTCACCCCAATCTCACCGTGACCTACATCCCCTGGCCTGCATCCCATGTAGGGTTTCGGGTGGTGCAATCGGCAGCATTATAA

Protein sequence

MSGSRSRVGDHFLTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHVLSLASGIFLCHCWICWQFSSRSHQKHSASYNLAHKVPEFSSEGRQGHMSSFLRHIEAFSWNYFSWLSYQPLISLIHVSAPAMRLMAGGSDEFLFSCAHCCSGMALMLTRRGNRWAFVHVSVYSKGIVQASKDTWDAFKMVHLDIVIHPNLTVTYIPWPASHVGFRVVQSAAL

Homology

[Close]

BLAST of Lcy05g018260 vs. ExPASy TrEMBL
Match: A0A5D3C054 (Protein PNS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00220 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 4.8e-44
Identity = 121/302 (40.07%), Postives = 153/302 (50.66%), Query Frame = 0


Query: 12  FLTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHV 71
           FLT+R LQ+AS THH H  KWYPPLLAS GSSGII F WQ F+G SP+MA KT FW S V
Sbjct: 67  FLTVRGLQAASKTHHFHPEKWYPPLLASTGSSGIIGFLWQAFTGCSPSMALKTAFWFSPV 126

Query: 72  LSLASGIF---------------------LCHCWICW------------QFSSRSHQKHS 131
           LSLASG+F                     +   ++CW              S++   K++
Sbjct: 127 LSLASGVFFVIVGSRGGLAAGVILIVCSLILSVYVCWINHRLNYATELLSLSTKYPPKNT 186

Query: 132 ASYNLAHKV-----PEFSSEG-------RQGHMSSFLRHI-EAFSWNY------------ 191
           + +     +       F   G       R G  + F+  I  + SW+             
Sbjct: 187 SIFVFGSIIIGILYASFLVIGIGGAIALRSGFTALFVAAILLSLSWSLQVIKNIVQVTIS 246

Query: 192 -FSWLSYQ-----------------------------PLISLIHVSAPAMRLMAGGSDEF 226
              +L++                              PLIS I  SA +MRL+AG SDEF
Sbjct: 247 CIKYLNFAKGSEKDIRAAFHDTIKNSVGTICLGSAIIPLISFIQGSARSMRLVAGDSDEF 306

[Close]

BLAST of Lcy05g018260 vs. ExPASy TrEMBL
Match: A0A1S4DUB0 (protein PNS1-like OS=Cucumis melo OX=3656 GN=LOC103486021 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 4.8e-44
Identity = 121/302 (40.07%), Postives = 153/302 (50.66%), Query Frame = 0


Query: 12  FLTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHV 71
           FLT+R LQ+AS THH H  KWYPPLLAS GSSGII F WQ F+G SP+MA KT FW S V
Sbjct: 67  FLTVRGLQAASKTHHFHPEKWYPPLLASTGSSGIIGFLWQAFTGCSPSMALKTAFWFSPV 126

Query: 72  LSLASGIF---------------------LCHCWICW------------QFSSRSHQKHS 131
           LSLASG+F                     +   ++CW              S++   K++
Sbjct: 127 LSLASGVFFVIVGSRGGLAAGVILIVCSLILSVYVCWINHRLNYATELLSLSTKYPPKNT 186

Query: 132 ASYNLAHKV-----PEFSSEG-------RQGHMSSFLRHI-EAFSWNY------------ 191
           + +     +       F   G       R G  + F+  I  + SW+             
Sbjct: 187 SIFVFGSIIIGILYASFLVIGIGGAIALRSGFTALFVAAILLSLSWSLQVIKNIVQVTIS 246

Query: 192 -FSWLSYQ-----------------------------PLISLIHVSAPAMRLMAGGSDEF 226
              +L++                              PLIS I  SA +MRL+AG SDEF
Sbjct: 247 CIKYLNFAKGSEKDIRAAFHDTIKNSVGTICLGSAIIPLISFIQGSARSMRLVAGDSDEF 306

[Close]

BLAST of Lcy05g018260 vs. ExPASy TrEMBL
Match: A0A0A0L2R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G580380 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-42
Identity = 119/302 (39.40%), Postives = 150/302 (49.67%), Query Frame = 0


Query: 12  FLTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHV 71
           +LT+R LQ+AS THH H  KWYPPLLAS GSSGII FSWQ F+G SP+MA KT FW S V
Sbjct: 67  YLTVRGLQAASKTHHFHPRKWYPPLLASTGSSGIIGFSWQAFTGCSPSMALKTAFWFSPV 126

Query: 72  LSLASGIF---------------------LCHCWICW------------QFSSRSHQKHS 131
           LSLASG+F                     +   ++CW              S++   K++
Sbjct: 127 LSLASGVFFVIVGSRGGLAAGVILIVCSLILSVYVCWINHRLNYAIRLLSLSTKYPPKNT 186

Query: 132 ASYNLAHKV-----PEFSSEGRQGHM---SSFLRHIEA-----FSWNY----------FS 191
           + +     +       F   G  G +   S F     A      SW+            S
Sbjct: 187 SIFVFGSIIIGILYASFLVIGIGGAIALRSDFTALFVAAILLILSWSLQVIKNIVQVTIS 246

Query: 192 WLSYQ--------------------------------PLISLIHVSAPAMRLMAGGSDEF 226
            + Y                                 PL S I  SA +MRL+AG SDEF
Sbjct: 247 CIKYLNLAEGSEKDIGAAFHDIIKNSVGTISLGSAIIPLFSFIQGSARSMRLVAGDSDEF 306

[Close]

BLAST of Lcy05g018260 vs. ExPASy TrEMBL
Match: A0A6J1IKE0 (protein PNS1-like OS=Cucurbita maxima OX=3661 GN=LOC111478231 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.5e-42
Identity = 123/305 (40.33%), Postives = 152/305 (49.84%), Query Frame = 0


Query: 13  LTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHVL 72
           LT+ RL+SAS THH H  +WYPPLLASIGSSGIIAFSWQ F+G SP+MAFKT FW S VL
Sbjct: 68  LTVLRLRSASKTHHFHPKEWYPPLLASIGSSGIIAFSWQAFTGCSPSMAFKTAFWFSPVL 127

Query: 73  SLASGIF---------------------LCHCWICWQFSSRSHQKHSA--SYNLAHKVPE 132
           SLASG+F                     +   ++CW     +H+ + A    +L+ K P 
Sbjct: 128 SLASGVFFVIVGSRGGLAAGVILIVSSLIVSVYVCW----INHRLNYAIQLLSLSTKYPP 187

Query: 133 FSSE----------------------GRQGHMSSF---------------------LRHI 192
            ++                       G     SSF                     + H+
Sbjct: 188 TNTPIFVFGSIVIGVLYAAFMVIGIGGATSITSSFKALFIAAILLSLTWTLQVIKNVVHV 247

Query: 193 EAFSWNYF--SW------------------------LSYQPLISLIHVSAPAMRLMAGGS 226
                 YF  +W                         +  P IS IH SA AMRL+AG S
Sbjct: 248 TISRIKYFNLAWGREKDIRAAFYDIIKHSAGTISLGSAIIPFISFIHGSARAMRLVAGDS 307

[Close]

BLAST of Lcy05g018260 vs. ExPASy TrEMBL
Match: A0A6J1GGE9 (protein PNS1-like OS=Cucurbita moschata OX=3662 GN=LOC111453700 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.9e-41
Identity = 122/305 (40.00%), Postives = 151/305 (49.51%), Query Frame = 0


Query: 13  LTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHVL 72
           LT+  L+SAS THH H  +WYPPLLASIGSSGIIAFSWQ F+G SP+MAFKT FW S VL
Sbjct: 68  LTVLGLRSASKTHHFHPKEWYPPLLASIGSSGIIAFSWQAFTGCSPSMAFKTAFWFSPVL 127

Query: 73  SLASGIF---------------------LCHCWICWQFSSRSHQKHSA--SYNLAHKVPE 132
           SLASG+F                     +   ++CW     +H+ + A    +L+ K P 
Sbjct: 128 SLASGVFFVIVGSRGGLAAGVILIVSSLIVSVYVCW----INHRLNYAIQLLSLSTKYPP 187

Query: 133 FSSE----------------------GRQGHMSSF---------------------LRHI 192
            ++                       G     SSF                     + H+
Sbjct: 188 TNTPIFVFGSILIGVLYAAFVVIGIGGATSITSSFKALFIAAILLSLTWTLQVIKNVVHV 247

Query: 193 EAFSWNYF--SW------------------------LSYQPLISLIHVSAPAMRLMAGGS 226
                 YF  +W                         +  P IS IH SA AMRL+AG S
Sbjct: 248 TISRIKYFNLAWGREKDIRAAFYDIIKHSAGTISLGSAIIPFISFIHGSARAMRLVAGDS 307

[Close]

BLAST of Lcy05g018260 vs. NCBI nr
Match: XP_016899572.1 (PREDICTED: protein PNS1-like [Cucumis melo] >KAA0041832.1 protein PNS1-like [Cucumis melo var. makuwa] >TYK05353.1 protein PNS1-like [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 9.9e-44
Identity = 121/302 (40.07%), Postives = 153/302 (50.66%), Query Frame = 0


Query: 12  FLTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHV 71
           FLT+R LQ+AS THH H  KWYPPLLAS GSSGII F WQ F+G SP+MA KT FW S V
Sbjct: 67  FLTVRGLQAASKTHHFHPEKWYPPLLASTGSSGIIGFLWQAFTGCSPSMALKTAFWFSPV 126

Query: 72  LSLASGIF---------------------LCHCWICW------------QFSSRSHQKHS 131
           LSLASG+F                     +   ++CW              S++   K++
Sbjct: 127 LSLASGVFFVIVGSRGGLAAGVILIVCSLILSVYVCWINHRLNYATELLSLSTKYPPKNT 186

Query: 132 ASYNLAHKV-----PEFSSEG-------RQGHMSSFLRHI-EAFSWNY------------ 191
           + +     +       F   G       R G  + F+  I  + SW+             
Sbjct: 187 SIFVFGSIIIGILYASFLVIGIGGAIALRSGFTALFVAAILLSLSWSLQVIKNIVQVTIS 246

Query: 192 -FSWLSYQ-----------------------------PLISLIHVSAPAMRLMAGGSDEF 226
              +L++                              PLIS I  SA +MRL+AG SDEF
Sbjct: 247 CIKYLNFAKGSEKDIRAAFHDTIKNSVGTICLGSAIIPLISFIQGSARSMRLVAGDSDEF 306

[Close]

BLAST of Lcy05g018260 vs. NCBI nr
Match: XP_038881864.1 (protein PNS1-like [Benincasa hispida])

HSP 1 Score: 186.4 bits (472), Expect = 2.9e-43
Identity = 123/302 (40.73%), Postives = 152/302 (50.33%), Query Frame = 0


Query: 12  FLTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHV 71
           FLT+R LQSAS THH H  KWYPPLLASIGSSGII FSWQ F+G SP+MA KT FW S +
Sbjct: 60  FLTVRGLQSASKTHHFHPEKWYPPLLASIGSSGIIGFSWQAFTGCSPSMAIKTAFWFSPI 119

Query: 72  LSLASGIF---------------------LCHCWICW------------QFSSRSHQKHS 131
           LSLASG+F                     +   ++CW              S+    K++
Sbjct: 120 LSLASGVFFVIVGSRGGLAAGVVLIVCSLIMSVYVCWINHRLNYAIKILSLSTEYPPKNT 179

Query: 132 -----ASYNLAHKVPEFSSEG-------RQGHMSSFLRHI-EAFSWNY------------ 191
                 S  +      F   G       R G  + F+  I  + +W+             
Sbjct: 180 PIFVIGSILIGILYASFLVIGIGGAIAVRSGFKALFVAAILLSLAWSLQVIKNIVQVTIS 239

Query: 192 ------FSWLSYQ------------------------PLISLIHVSAPAMRLMAGGSDEF 226
                  +W + +                        PLIS I  SA +MRL+AG SDEF
Sbjct: 240 RIKYLNLAWGNEKDIQAAFHDTVKDSIGTISLGSAIIPLISFIQGSARSMRLVAGDSDEF 299

[Close]

BLAST of Lcy05g018260 vs. NCBI nr
Match: XP_011653946.1 (protein PNS1 [Cucumis sativus] >KAE8649774.1 hypothetical protein Csa_012306 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 4.2e-42
Identity = 119/302 (39.40%), Postives = 150/302 (49.67%), Query Frame = 0


Query: 12  FLTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHV 71
           +LT+R LQ+AS THH H  KWYPPLLAS GSSGII FSWQ F+G SP+MA KT FW S V
Sbjct: 97  YLTVRGLQAASKTHHFHPRKWYPPLLASTGSSGIIGFSWQAFTGCSPSMALKTAFWFSPV 156

Query: 72  LSLASGIF---------------------LCHCWICW------------QFSSRSHQKHS 131
           LSLASG+F                     +   ++CW              S++   K++
Sbjct: 157 LSLASGVFFVIVGSRGGLAAGVILIVCSLILSVYVCWINHRLNYAIRLLSLSTKYPPKNT 216

Query: 132 ASYNLAHKV-----PEFSSEGRQGHM---SSFLRHIEA-----FSWNY----------FS 191
           + +     +       F   G  G +   S F     A      SW+            S
Sbjct: 217 SIFVFGSIIIGILYASFLVIGIGGAIALRSDFTALFVAAILLILSWSLQVIKNIVQVTIS 276

Query: 192 WLSYQ--------------------------------PLISLIHVSAPAMRLMAGGSDEF 226
            + Y                                 PL S I  SA +MRL+AG SDEF
Sbjct: 277 CIKYLNLAEGSEKDIGAAFHDIIKNSVGTISLGSAIIPLFSFIQGSARSMRLVAGDSDEF 336

[Close]

BLAST of Lcy05g018260 vs. NCBI nr
Match: XP_022978167.1 (protein PNS1-like [Cucurbita maxima])

HSP 1 Score: 181.4 bits (459), Expect = 9.2e-42
Identity = 123/305 (40.33%), Postives = 152/305 (49.84%), Query Frame = 0


Query: 13  LTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHVL 72
           LT+ RL+SAS THH H  +WYPPLLASIGSSGIIAFSWQ F+G SP+MAFKT FW S VL
Sbjct: 68  LTVLRLRSASKTHHFHPKEWYPPLLASIGSSGIIAFSWQAFTGCSPSMAFKTAFWFSPVL 127

Query: 73  SLASGIF---------------------LCHCWICWQFSSRSHQKHSA--SYNLAHKVPE 132
           SLASG+F                     +   ++CW     +H+ + A    +L+ K P 
Sbjct: 128 SLASGVFFVIVGSRGGLAAGVILIVSSLIVSVYVCW----INHRLNYAIQLLSLSTKYPP 187

Query: 133 FSSE----------------------GRQGHMSSF---------------------LRHI 192
            ++                       G     SSF                     + H+
Sbjct: 188 TNTPIFVFGSIVIGVLYAAFMVIGIGGATSITSSFKALFIAAILLSLTWTLQVIKNVVHV 247

Query: 193 EAFSWNYF--SW------------------------LSYQPLISLIHVSAPAMRLMAGGS 226
                 YF  +W                         +  P IS IH SA AMRL+AG S
Sbjct: 248 TISRIKYFNLAWGREKDIRAAFYDIIKHSAGTISLGSAIIPFISFIHGSARAMRLVAGDS 307

[Close]

BLAST of Lcy05g018260 vs. NCBI nr
Match: XP_023543456.1 (protein PNS1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 6.0e-41
Identity = 122/305 (40.00%), Postives = 151/305 (49.51%), Query Frame = 0


Query: 13  LTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHVL 72
           LT+  L+SAS THH H  +WYPPLLASIGSSGIIAFSWQ F+G SP+MAFKT FW S VL
Sbjct: 68  LTVLGLRSASKTHHFHPKEWYPPLLASIGSSGIIAFSWQAFTGCSPSMAFKTAFWFSPVL 127

Query: 73  SLASGIF---------------------LCHCWICWQFSSRSHQKHSA--SYNLAHKVPE 132
           SLASG+F                     +   ++CW     +H+ + A    +L+ K P 
Sbjct: 128 SLASGVFFIIVGSRGGLAAGVILIVSSLIVSVYVCW----INHRLNYAIQLLSLSTKYPP 187

Query: 133 FSSE----------------------GRQGHMSSF---------------------LRHI 192
            ++                       G     SSF                     + H+
Sbjct: 188 TNTPIFVFGSILIGVLYAAFVVIGIGGATSITSSFKALFIAAILLSLTWTLQVIKNVVHV 247

Query: 193 EAFSWNYF--SW------------------------LSYQPLISLIHVSAPAMRLMAGGS 226
                 YF  +W                         +  P IS IH SA AMRL+AG S
Sbjct: 248 TISRIKYFNLAWGREKDIRAAFYDIIKHSAGTISLGSAIIPFISFIHGSARAMRLVAGDS 307

[Close]

BLAST of Lcy05g018260 vs. TAIR 10
Match: AT3G03700.1 (Plasma-membrane choline transporter family protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-23
Identity = 92/311 (29.58%), Postives = 125/311 (40.19%), Query Frame = 0


Query: 13  LTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHVL 72
           LTIR L SAS THH HL KWYPPLLAS+  SGI + +WQ    Y+P+ A K  FWLS +L
Sbjct: 75  LTIRGLISAS-THHFHLKKWYPPLLASVAVSGIASLAWQCIFIYNPSRAVKATFWLSPIL 134

Query: 73  SLASGIFLC------------------------HCWICWQFS--------------SRSH 132
           + + GI L                          CWI  +                +R+ 
Sbjct: 135 TCSVGILLVLIGSAVDAGIGAVFVLFAITQSLYGCWITPRLEYTDKILSLATAFPPARTR 194

Query: 133 QKHSASYNLAHKVPEFSSEGRQGHMS---------------------------------- 192
           +    S  ++     F   G  G  S                                  
Sbjct: 195 EVVCLSIIVSVVYSGFLVTGIGGATSTRTNLDILFISVIIISLAWTMQVIKNVQQVAISR 254

Query: 193 ----SFLRHIEAFSWNYFS------------WLSYQPLISLIHVSAPAMRLMAGGSDEFL 235
               +F    +  +WN F               +  P+I  I  S  ++ LM+G SDE +
Sbjct: 255 ARYVNFAHGEDMDAWNAFRITMKHLTGSICVGSTLVPIIVFIRGSIRSVNLMSGSSDEVM 314

[Close]

BLAST of Lcy05g018260 vs. TAIR 10
Match: AT3G04440.1 (Plasma-membrane choline transporter family protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-23
Identity = 92/311 (29.58%), Postives = 125/311 (40.19%), Query Frame = 0


Query: 13  LTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHVL 72
           LTIR L SAS THH HL KWYPPLLAS+  SGI + +WQ    Y+P+ A K  FWLS +L
Sbjct: 75  LTIRGLISAS-THHFHLKKWYPPLLASVAVSGIASLAWQCIFIYNPSRAVKATFWLSPIL 134

Query: 73  SLASGIFLC------------------------HCWICWQFS--------------SRSH 132
           + + GI L                          CWI  +                +R+ 
Sbjct: 135 TCSVGILLVLIGSAVDAGIGAVFVLFAITQSLYGCWITPRLEYTDKILSLATAFPPARTR 194

Query: 133 QKHSASYNLAHKVPEFSSEGRQGHMS---------------------------------- 192
           +    S  ++     F   G  G  S                                  
Sbjct: 195 EVVCLSIIVSVVYSGFLVTGIGGATSTRTNLDILFISVIIISLAWTMQVIKNVQQVAISR 254

Query: 193 ----SFLRHIEAFSWNYFS------------WLSYQPLISLIHVSAPAMRLMAGGSDEFL 235
               +F    +  +WN F               +  P+I  I  S  ++ LM+G SDE +
Sbjct: 255 ARYVNFAHGEDMDAWNAFRITMKHLTGSICVGSTLVPIIVFIRGSIRSVNLMSGSSDEVM 314

[Close]

BLAST of Lcy05g018260 vs. TAIR 10
Match: AT5G17830.1 (Plasma-membrane choline transporter family protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05
Identity = 22/68 (32.35%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 13  LTIRRLQSASNTHHIHLGKWYPPLLASIGSSGIIAFSWQVFSGYSPTMAFKTDFWLSHVL 72
           LT+R L   + + + H  KWY PLL+S+  SG+++ +W  F   +     K  FW + + 
Sbjct: 73  LTLRGL-VCTKSPNFHPKKWYTPLLSSVAVSGVLSIAWNCFFVCNIRATVKATFWFTPLF 132

Query: 73  SLASGIFL 81
           +++ G+FL
Sbjct: 133 TISVGLFL 139

HSP 2 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 18/41 (43.90%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 171 CSGMALMLTRRGNRWAFVHVSVYSKGIVQASKDTWDAFKMV 212
           C+ +A  +   GNR+ FVHV  ++KG+ QAS DTW  F+ +
Sbjct: 314 CNWIANHIILGGNRYGFVHVGAHNKGLRQASSDTWRRFRTI 354

The following BLAST results are available for this feature:

BLAST of Lcy05g018260 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g018260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C054	4.8e-44	40.07	Protein PNS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G002...	[more]
A0A1S4DUB0	4.8e-44	40.07	protein PNS1-like OS=Cucumis melo OX=3656 GN=LOC103486021 PE=3 SV=1	[more]
A0A0A0L2R8	2.0e-42	39.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G580380 PE=3 SV=1	[more]
A0A6J1IKE0	4.5e-42	40.33	protein PNS1-like OS=Cucurbita maxima OX=3661 GN=LOC111478231 PE=3 SV=1	[more]
A0A6J1GGE9	2.9e-41	40.00	protein PNS1-like OS=Cucurbita moschata OX=3662 GN=LOC111453700 PE=3 SV=1	[more]

BLAST of Lcy05g018260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899572.1	9.9e-44	40.07	PREDICTED: protein PNS1-like [Cucumis melo] >KAA0041832.1 protein PNS1-like [Cuc...	[more]
XP_038881864.1	2.9e-43	40.73	protein PNS1-like [Benincasa hispida]	[more]
XP_011653946.1	4.2e-42	39.40	protein PNS1 [Cucumis sativus] >KAE8649774.1 hypothetical protein Csa_012306 [Cu...	[more]
XP_022978167.1	9.2e-42	40.33	protein PNS1-like [Cucurbita maxima]	[more]
XP_023543456.1	6.0e-41	40.00	protein PNS1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy05g018260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03700.1	1.6e-23	29.58	Plasma-membrane choline transporter family protein	[more]
AT3G04440.1	1.6e-23	29.58	Plasma-membrane choline transporter family protein	[more]
AT5G17830.1	1.1e-05	32.35	Plasma-membrane choline transporter family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12385:SF84	F20H23.27 PROTEIN-RELATED	coord: 12..81 coord: 141..225
IPR007603	Choline transporter-like	PANTHER	PTHR12385	CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)	coord: 12..81 coord: 141..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g018260.1	Lcy05g018260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
molecular_function	GO:0022857	transmembrane transporter activity