Lcy05g018220 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g018220
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionProline-rich protein HaeIII subfamily 1-like
LocationChr05: 35076128 .. 35076646 (-)
RNA-Seq ExpressionLcy05g018220
SyntenyLcy05g018220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCAAGTAATTCTAATGTGTTTTTGGGAGCTTATGTCCTCATAATTCTGGGGTTTCACTTTACTATCTACCAAACAAATGCTAGAAAAATTTTCATAGCCGATGAAGACAATTCCATTGTTGAAAAGGAATCGAACGATAACTTTATAAAGCATCCAAAAGGCGTACACATTCCTCCATCTATCATTTTAAAGGAGTCTAAGGTCTACTATGGAATTTTACCAAAAGGTGTACGTATTCCTCCATCTGGGCCAAGTCAAAGGACATCGGACTATCCCCCTCCACCACCTCGTGTTCCATCATTCAATTTAAGGAAGGAATCTATAATTAACTTCGGAATATTACCAAAAGGCGTACGTATTCCTCCATCTAGGCCAAGTCAAACGACTTCAGACTATCCACCTCCTCCATCGCATGTTCCTTCAATTATTTTAGAGAAAAAATCAAACTTAAATTTTGGAATGTATCCTAGAGTACCTATTCCACCATCTGCAGGAAGTGGAAGGATCCATTAA

mRNA sequence

ATGGCATCAAGTAATTCTAATGTGTTTTTGGGAGCTTATGTCCTCATAATTCTGGGGTTTCACTTTACTATCTACCAAACAAATGCTAGAAAAATTTTCATAGCCGATGAAGACAATTCCATTGTTGAAAAGGAATCGAACGATAACTTTATAAAGCATCCAAAAGGCGTACACATTCCTCCATCTATCATTTTAAAGGAGTCTAAGGTCTACTATGGAATTTTACCAAAAGGTGTACGTATTCCTCCATCTGGGCCAAGTCAAAGGACATCGGACTATCCCCCTCCACCACCTCGTGTTCCATCATTCAATTTAAGGAAGGAATCTATAATTAACTTCGGAATATTACCAAAAGGCGTACGTATTCCTCCATCTAGGCCAAGTCAAACGACTTCAGACTATCCACCTCCTCCATCGCATGTTCCTTCAATTATTTTAGAGAAAAAATCAAACTTAAATTTTGGAATGTATCCTAGAGTACCTATTCCACCATCTGCAGGAAGTGGAAGGATCCATTAA

Coding sequence (CDS)

ATGGCATCAAGTAATTCTAATGTGTTTTTGGGAGCTTATGTCCTCATAATTCTGGGGTTTCACTTTACTATCTACCAAACAAATGCTAGAAAAATTTTCATAGCCGATGAAGACAATTCCATTGTTGAAAAGGAATCGAACGATAACTTTATAAAGCATCCAAAAGGCGTACACATTCCTCCATCTATCATTTTAAAGGAGTCTAAGGTCTACTATGGAATTTTACCAAAAGGTGTACGTATTCCTCCATCTGGGCCAAGTCAAAGGACATCGGACTATCCCCCTCCACCACCTCGTGTTCCATCATTCAATTTAAGGAAGGAATCTATAATTAACTTCGGAATATTACCAAAAGGCGTACGTATTCCTCCATCTAGGCCAAGTCAAACGACTTCAGACTATCCACCTCCTCCATCGCATGTTCCTTCAATTATTTTAGAGAAAAAATCAAACTTAAATTTTGGAATGTATCCTAGAGTACCTATTCCACCATCTGCAGGAAGTGGAAGGATCCATTAA

Protein sequence

MASSNSNVFLGAYVLIILGFHFTIYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHIPPSIILKESKVYYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGILPKGVRIPPSRPSQTTSDYPPPPSHVPSIILEKKSNLNFGMYPRVPIPPSAGSGRIH
Homology
BLAST of Lcy05g018220 vs. ExPASy TrEMBL
Match: A0A6J1HRH7 (actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3661 GN=LOC111467141 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 4.4e-36
Identity = 84/156 (53.85%), Postives = 105/156 (67.31%), Query Frame = 0

Query: 24  IYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHIPPSIILKES--------KVYYGIL 83
           IY+T+A+ +   D D++I E E  D  +++PKG+ I  S   + +         + +G+L
Sbjct: 185 IYETDAKNVVEVDVDDNIREAELTDLIVQNPKGISISSSRSSQRTLFHRTPSPSLVFGML 244

Query: 84  PKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGILPKGVRIPPSRPSQTTSDYP 143
           PKGV IPPS PSQRTSDYPPPPPR  S  L K S IN G+LP+GV IPPS PSQ TSDYP
Sbjct: 245 PKGVPIPPSRPSQRTSDYPPPPPRASSIILNKHSKINLGMLPRGVPIPPSGPSQRTSDYP 304

Query: 144 PPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
           PPP H  S+IL K+S +NFGM P+ VPIPPS  S R
Sbjct: 305 PPPPHASSVILNKQSKINFGMLPKGVPIPPSGPSQR 340

BLAST of Lcy05g018220 vs. ExPASy TrEMBL
Match: A0A5D3CGG1 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00020 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 89/176 (50.57%), Postives = 107/176 (60.80%), Query Frame = 0

Query: 1   MASSNSNVFLGAYVLIILGFHFTIYQTNARKIFIADEDNSIVEKESNDNFIKHPKGV-HI 60
           M S  +N+F  A  LI LG HF IY TNA++ F+ DEDNS +E     + I HPK V H 
Sbjct: 1   MVSVGTNIFFRACALIFLGLHFEIYLTNAKRSFVVDEDNSSLENVLRGDIINHPKKVAHF 60

Query: 61  ----PPSIILKESKVYYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGI 120
               P  I         GIL KG+R PPSG SQ TS+ PP P   P   L KES++NFGI
Sbjct: 61  SWPKPKKIPDLAPPFSLGILSKGIRTPPSGLSQGTSNNPPSPHVAPII-LHKESMVNFGI 120

Query: 121 LPKGVRIPPSRPSQTTSDYPPPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
           LPKGVRIPPS PS+ TSD PPP S+  SI   K+S + +G+ P+ V IPPS  S R
Sbjct: 121 LPKGVRIPPSGPSRRTSDPPPPLSNFHSI---KESRIKYGILPKGVRIPPSGPSKR 172

BLAST of Lcy05g018220 vs. ExPASy TrEMBL
Match: A0A5D3BP86 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00050 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.8e-29
Identity = 90/177 (50.85%), Postives = 104/177 (58.76%), Query Frame = 0

Query: 1   MASSNSNVFLGAYVLIILGFHFTIYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHIP 60
           M S +SN+      +++LG HF IYQTN R +F   EDNS+ E E   N I HPK  +I 
Sbjct: 1   MMSISSNMTFKTCAIVLLGLHFGIYQTNGRNLFEVKEDNSVFENELKANSIIHPK-QYIH 60

Query: 61  PSIILKESK------VYYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFG 120
            S+   + K        +GI  K VRIPPSGPSQR+SD PP     PS  L KES INFG
Sbjct: 61  FSLTKSKGKPEFDTHFRFGIFSKDVRIPPSGPSQRSSDSPPS----PSMILPKESRINFG 120

Query: 121 ILPKGVRIPPSRPSQTTSDYPPPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
           ILPKG RIPPS PSQ  SD P P    PS  L K SN+ FGM P+   IPPS  S R
Sbjct: 121 ILPKGSRIPPSGPSQRFSDSPLP----PSTFLHKGSNMIFGMLPKGHHIPPSGPSKR 168

BLAST of Lcy05g018220 vs. ExPASy TrEMBL
Match: A0A6A5P9E6 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00004179 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.1e-22
Identity = 68/143 (47.55%), Postives = 87/143 (60.84%), Query Frame = 0

Query: 43  EKESNDNFIKH---PKGVHIPPSIILKE------------SKVYYGILPKGVRIPPSGPS 102
           +KESN + I +    KG+  PPS+  K+            S + YG+LPKGV +PPSGPS
Sbjct: 33  QKESNPSNIYYGMLVKGLPAPPSVPSKKTSLPPNSDIETFSNINYGMLPKGVPVPPSGPS 92

Query: 103 QRTSDYPPPPPRVPSFNLRKESIINFGILPKGVRIPPSRPSQTTSDYPPPPSHVPSIILE 162
            +TSD PPPPP+   +++   S INFG+LPKG R PPS PS  TSD PPPP   P   +E
Sbjct: 93  NKTSDPPPPPPK---YDIETFSNINFGMLPKG-RTPPSGPSNKTSDPPPPP---PKYDIE 152

Query: 163 KKSNLNFGMYPRVPIPPSAGSGR 171
             SN+NFGM P+   PPS  S +
Sbjct: 153 TFSNINFGMLPKGTTPPSGHSNK 168

BLAST of Lcy05g018220 vs. ExPASy TrEMBL
Match: A0A6A4PCZ2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr15g0079321 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.1e-22
Identity = 68/143 (47.55%), Postives = 87/143 (60.84%), Query Frame = 0

Query: 43  EKESNDNFIKH---PKGVHIPPSIILKE------------SKVYYGILPKGVRIPPSGPS 102
           +KESN + I +    KG+  PPS+  K+            S + YG+LPKGV +PPSGPS
Sbjct: 29  QKESNPSNIYYGMLVKGLPAPPSVPSKKTSLPPNSDIETFSNINYGMLPKGVPVPPSGPS 88

Query: 103 QRTSDYPPPPPRVPSFNLRKESIINFGILPKGVRIPPSRPSQTTSDYPPPPSHVPSIILE 162
            +TSD PPPPP+   +++   S INFG+LPKG R PPS PS  TSD PPPP   P   +E
Sbjct: 89  NKTSDPPPPPPK---YDIETFSNINFGMLPKG-RTPPSGPSNKTSDPPPPP---PKYDIE 148

Query: 163 KKSNLNFGMYPRVPIPPSAGSGR 171
             SN+NFGM P+   PPS  S +
Sbjct: 149 TFSNINFGMLPKGTTPPSGHSNK 164

BLAST of Lcy05g018220 vs. NCBI nr
Match: KAG6603169.1 (hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-36
Identity = 87/163 (53.37%), Postives = 107/163 (65.64%), Query Frame = 0

Query: 24  IYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHI---------------PPSIILKES 83
           +Y+T+A+K+   D  ++I E+E  D  +KHPKG+ I               PP ++L+  
Sbjct: 25  VYETDAKKVVEVDVYDTIREEELTDQMVKHPKGISISSSRSSQRTLFHLTPPPPVVLR-- 84

Query: 84  KVYYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGILPKGVRIPPSRPS 143
                +LPKGV I PSGPSQRTSDYPPPPPR  S  L K+S INFG+LPKGV IPPS PS
Sbjct: 85  -----MLPKGVPISPSGPSQRTSDYPPPPPRASSVILSKQSKINFGMLPKGVPIPPSGPS 144

Query: 144 QTTSDYPPPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
           Q TSDYPPPP    S+IL K+S +NFGM P+ VPIPPS  S R
Sbjct: 145 QRTSDYPPPPPRASSVILNKQSKINFGMLPKGVPIPPSGPSQR 180

BLAST of Lcy05g018220 vs. NCBI nr
Match: XP_022967687.1 (actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima])

HSP 1 Score: 161.0 bits (406), Expect = 9.2e-36
Identity = 84/156 (53.85%), Postives = 105/156 (67.31%), Query Frame = 0

Query: 24  IYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHIPPSIILKES--------KVYYGIL 83
           IY+T+A+ +   D D++I E E  D  +++PKG+ I  S   + +         + +G+L
Sbjct: 185 IYETDAKNVVEVDVDDNIREAELTDLIVQNPKGISISSSRSSQRTLFHRTPSPSLVFGML 244

Query: 84  PKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGILPKGVRIPPSRPSQTTSDYP 143
           PKGV IPPS PSQRTSDYPPPPPR  S  L K S IN G+LP+GV IPPS PSQ TSDYP
Sbjct: 245 PKGVPIPPSRPSQRTSDYPPPPPRASSIILNKHSKINLGMLPRGVPIPPSGPSQRTSDYP 304

Query: 144 PPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
           PPP H  S+IL K+S +NFGM P+ VPIPPS  S R
Sbjct: 305 PPPPHASSVILNKQSKINFGMLPKGVPIPPSGPSQR 340

BLAST of Lcy05g018220 vs. NCBI nr
Match: XP_038882352.1 (uncharacterized protein LOC120073615 [Benincasa hispida])

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-34
Identity = 92/175 (52.57%), Postives = 112/175 (64.00%), Query Frame = 0

Query: 4   SNSNVFLGAYVLIILGFHFTIYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHIPPSI 63
           S SNVF GA   I LG H TIYQT+A+ +F+ ++ +S +E E +D  IKHPK  HI  S 
Sbjct: 5   SYSNVFFGACAFIFLGLHSTIYQTDAKNVFVVEKGDSTIENELSDENIKHPKR-HIHFS- 64

Query: 64  ILKESKV-------YYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGIL 123
           + K  ++         GIL K  R+PPSG SQ TSD PPPPP V S  L KES INF +L
Sbjct: 65  LGKYKRIPDLAPPFNLGILSKEERVPPSGLSQSTSDNPPPPPHVISIILHKESRINFRVL 124

Query: 124 PKGVRIPPSRPSQTTSDYPPPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
            KG RIPPS PSQ TS+ PPPP H  S+IL KK  +NFG+ P+ + IPPS  S R
Sbjct: 125 SKGNRIPPSGPSQRTSESPPPPPHALSVILHKKPGINFGILPKSMHIPPSGPSKR 177

BLAST of Lcy05g018220 vs. NCBI nr
Match: KAA0040932.1 (proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK10605.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 3.4e-30
Identity = 89/176 (50.57%), Postives = 107/176 (60.80%), Query Frame = 0

Query: 1   MASSNSNVFLGAYVLIILGFHFTIYQTNARKIFIADEDNSIVEKESNDNFIKHPKGV-HI 60
           M S  +N+F  A  LI LG HF IY TNA++ F+ DEDNS +E     + I HPK V H 
Sbjct: 1   MVSVGTNIFFRACALIFLGLHFEIYLTNAKRSFVVDEDNSSLENVLRGDIINHPKKVAHF 60

Query: 61  ----PPSIILKESKVYYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGI 120
               P  I         GIL KG+R PPSG SQ TS+ PP P   P   L KES++NFGI
Sbjct: 61  SWPKPKKIPDLAPPFSLGILSKGIRTPPSGLSQGTSNNPPSPHVAPII-LHKESMVNFGI 120

Query: 121 LPKGVRIPPSRPSQTTSDYPPPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
           LPKGVRIPPS PS+ TSD PPP S+  SI   K+S + +G+ P+ V IPPS  S R
Sbjct: 121 LPKGVRIPPSGPSRRTSDPPPPLSNFHSI---KESRIKYGILPKGVRIPPSGPSKR 172

BLAST of Lcy05g018220 vs. NCBI nr
Match: KAA0043502.1 (proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK01137.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 3.7e-29
Identity = 90/177 (50.85%), Postives = 104/177 (58.76%), Query Frame = 0

Query: 1   MASSNSNVFLGAYVLIILGFHFTIYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHIP 60
           M S +SN+      +++LG HF IYQTN R +F   EDNS+ E E   N I HPK  +I 
Sbjct: 1   MMSISSNMTFKTCAIVLLGLHFGIYQTNGRNLFEVKEDNSVFENELKANSIIHPK-QYIH 60

Query: 61  PSIILKESK------VYYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFG 120
            S+   + K        +GI  K VRIPPSGPSQR+SD PP     PS  L KES INFG
Sbjct: 61  FSLTKSKGKPEFDTHFRFGIFSKDVRIPPSGPSQRSSDSPPS----PSMILPKESRINFG 120

Query: 121 ILPKGVRIPPSRPSQTTSDYPPPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
           ILPKG RIPPS PSQ  SD P P    PS  L K SN+ FGM P+   IPPS  S R
Sbjct: 121 ILPKGSRIPPSGPSQRFSDSPLP----PSTFLHKGSNMIFGMLPKGHHIPPSGPSKR 168

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HRH74.4e-3653.85actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3... [more]
A0A5D3CGG11.6e-3050.57Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5D3BP861.8e-2950.85Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A6A5P9E68.1e-2247.55Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00004179 PE=4 SV=1[more]
A0A6A4PCZ28.1e-2247.55Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr15g0079321 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6603169.12.4e-3653.37hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022967687.19.2e-3653.85actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima][more]
XP_038882352.11.7e-3452.57uncharacterized protein LOC120073615 [Benincasa hispida][more]
KAA0040932.13.4e-3050.57proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK1060... [more]
KAA0043502.13.7e-2950.85proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK0113... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..140
NoneNo IPR availablePANTHERPTHR33599:SF13FORMIN-LIKE PROTEIN 20coord: 56..171
IPR039639Protein IDA-likePANTHERPTHR33599PROTEIN IDA-LIKE 5coord: 56..171

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g018220.1Lcy05g018220.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010227 floral organ abscission