Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCAAGTAATTCTAATGTGTTTTTGGGAGCTTATGTCCTCATAATTCTGGGGTTTCACTTTACTATCTACCAAACAAATGCTAGAAAAATTTTCATAGCCGATGAAGACAATTCCATTGTTGAAAAGGAATCGAACGATAACTTTATAAAGCATCCAAAAGGCGTACACATTCCTCCATCTATCATTTTAAAGGAGTCTAAGGTCTACTATGGAATTTTACCAAAAGGTGTACGTATTCCTCCATCTGGGCCAAGTCAAAGGACATCGGACTATCCCCCTCCACCACCTCGTGTTCCATCATTCAATTTAAGGAAGGAATCTATAATTAACTTCGGAATATTACCAAAAGGCGTACGTATTCCTCCATCTAGGCCAAGTCAAACGACTTCAGACTATCCACCTCCTCCATCGCATGTTCCTTCAATTATTTTAGAGAAAAAATCAAACTTAAATTTTGGAATGTATCCTAGAGTACCTATTCCACCATCTGCAGGAAGTGGAAGGATCCATTAA
mRNA sequence
ATGGCATCAAGTAATTCTAATGTGTTTTTGGGAGCTTATGTCCTCATAATTCTGGGGTTTCACTTTACTATCTACCAAACAAATGCTAGAAAAATTTTCATAGCCGATGAAGACAATTCCATTGTTGAAAAGGAATCGAACGATAACTTTATAAAGCATCCAAAAGGCGTACACATTCCTCCATCTATCATTTTAAAGGAGTCTAAGGTCTACTATGGAATTTTACCAAAAGGTGTACGTATTCCTCCATCTGGGCCAAGTCAAAGGACATCGGACTATCCCCCTCCACCACCTCGTGTTCCATCATTCAATTTAAGGAAGGAATCTATAATTAACTTCGGAATATTACCAAAAGGCGTACGTATTCCTCCATCTAGGCCAAGTCAAACGACTTCAGACTATCCACCTCCTCCATCGCATGTTCCTTCAATTATTTTAGAGAAAAAATCAAACTTAAATTTTGGAATGTATCCTAGAGTACCTATTCCACCATCTGCAGGAAGTGGAAGGATCCATTAA
Coding sequence (CDS)
ATGGCATCAAGTAATTCTAATGTGTTTTTGGGAGCTTATGTCCTCATAATTCTGGGGTTTCACTTTACTATCTACCAAACAAATGCTAGAAAAATTTTCATAGCCGATGAAGACAATTCCATTGTTGAAAAGGAATCGAACGATAACTTTATAAAGCATCCAAAAGGCGTACACATTCCTCCATCTATCATTTTAAAGGAGTCTAAGGTCTACTATGGAATTTTACCAAAAGGTGTACGTATTCCTCCATCTGGGCCAAGTCAAAGGACATCGGACTATCCCCCTCCACCACCTCGTGTTCCATCATTCAATTTAAGGAAGGAATCTATAATTAACTTCGGAATATTACCAAAAGGCGTACGTATTCCTCCATCTAGGCCAAGTCAAACGACTTCAGACTATCCACCTCCTCCATCGCATGTTCCTTCAATTATTTTAGAGAAAAAATCAAACTTAAATTTTGGAATGTATCCTAGAGTACCTATTCCACCATCTGCAGGAAGTGGAAGGATCCATTAA
Protein sequence
MASSNSNVFLGAYVLIILGFHFTIYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHIPPSIILKESKVYYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGILPKGVRIPPSRPSQTTSDYPPPPSHVPSIILEKKSNLNFGMYPRVPIPPSAGSGRIH
Homology
BLAST of Lcy05g018220 vs. ExPASy TrEMBL
Match:
A0A6J1HRH7 (actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3661 GN=LOC111467141 PE=4 SV=1)
HSP 1 Score: 161.0 bits (406), Expect = 4.4e-36
Identity = 84/156 (53.85%), Postives = 105/156 (67.31%), Query Frame = 0
Query: 24 IYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHIPPSIILKES--------KVYYGIL 83
IY+T+A+ + D D++I E E D +++PKG+ I S + + + +G+L
Sbjct: 185 IYETDAKNVVEVDVDDNIREAELTDLIVQNPKGISISSSRSSQRTLFHRTPSPSLVFGML 244
Query: 84 PKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGILPKGVRIPPSRPSQTTSDYP 143
PKGV IPPS PSQRTSDYPPPPPR S L K S IN G+LP+GV IPPS PSQ TSDYP
Sbjct: 245 PKGVPIPPSRPSQRTSDYPPPPPRASSIILNKHSKINLGMLPRGVPIPPSGPSQRTSDYP 304
Query: 144 PPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
PPP H S+IL K+S +NFGM P+ VPIPPS S R
Sbjct: 305 PPPPHASSVILNKQSKINFGMLPKGVPIPPSGPSQR 340
BLAST of Lcy05g018220 vs. ExPASy TrEMBL
Match:
A0A5D3CGG1 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00020 PE=4 SV=1)
HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 89/176 (50.57%), Postives = 107/176 (60.80%), Query Frame = 0
Query: 1 MASSNSNVFLGAYVLIILGFHFTIYQTNARKIFIADEDNSIVEKESNDNFIKHPKGV-HI 60
M S +N+F A LI LG HF IY TNA++ F+ DEDNS +E + I HPK V H
Sbjct: 1 MVSVGTNIFFRACALIFLGLHFEIYLTNAKRSFVVDEDNSSLENVLRGDIINHPKKVAHF 60
Query: 61 ----PPSIILKESKVYYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGI 120
P I GIL KG+R PPSG SQ TS+ PP P P L KES++NFGI
Sbjct: 61 SWPKPKKIPDLAPPFSLGILSKGIRTPPSGLSQGTSNNPPSPHVAPII-LHKESMVNFGI 120
Query: 121 LPKGVRIPPSRPSQTTSDYPPPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
LPKGVRIPPS PS+ TSD PPP S+ SI K+S + +G+ P+ V IPPS S R
Sbjct: 121 LPKGVRIPPSGPSRRTSDPPPPLSNFHSI---KESRIKYGILPKGVRIPPSGPSKR 172
BLAST of Lcy05g018220 vs. ExPASy TrEMBL
Match:
A0A5D3BP86 (Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00050 PE=4 SV=1)
HSP 1 Score: 139.0 bits (349), Expect = 1.8e-29
Identity = 90/177 (50.85%), Postives = 104/177 (58.76%), Query Frame = 0
Query: 1 MASSNSNVFLGAYVLIILGFHFTIYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHIP 60
M S +SN+ +++LG HF IYQTN R +F EDNS+ E E N I HPK +I
Sbjct: 1 MMSISSNMTFKTCAIVLLGLHFGIYQTNGRNLFEVKEDNSVFENELKANSIIHPK-QYIH 60
Query: 61 PSIILKESK------VYYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFG 120
S+ + K +GI K VRIPPSGPSQR+SD PP PS L KES INFG
Sbjct: 61 FSLTKSKGKPEFDTHFRFGIFSKDVRIPPSGPSQRSSDSPPS----PSMILPKESRINFG 120
Query: 121 ILPKGVRIPPSRPSQTTSDYPPPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
ILPKG RIPPS PSQ SD P P PS L K SN+ FGM P+ IPPS S R
Sbjct: 121 ILPKGSRIPPSGPSQRFSDSPLP----PSTFLHKGSNMIFGMLPKGHHIPPSGPSKR 168
BLAST of Lcy05g018220 vs. ExPASy TrEMBL
Match:
A0A6A5P9E6 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00004179 PE=4 SV=1)
HSP 1 Score: 113.6 bits (283), Expect = 8.1e-22
Identity = 68/143 (47.55%), Postives = 87/143 (60.84%), Query Frame = 0
Query: 43 EKESNDNFIKH---PKGVHIPPSIILKE------------SKVYYGILPKGVRIPPSGPS 102
+KESN + I + KG+ PPS+ K+ S + YG+LPKGV +PPSGPS
Sbjct: 33 QKESNPSNIYYGMLVKGLPAPPSVPSKKTSLPPNSDIETFSNINYGMLPKGVPVPPSGPS 92
Query: 103 QRTSDYPPPPPRVPSFNLRKESIINFGILPKGVRIPPSRPSQTTSDYPPPPSHVPSIILE 162
+TSD PPPPP+ +++ S INFG+LPKG R PPS PS TSD PPPP P +E
Sbjct: 93 NKTSDPPPPPPK---YDIETFSNINFGMLPKG-RTPPSGPSNKTSDPPPPP---PKYDIE 152
Query: 163 KKSNLNFGMYPRVPIPPSAGSGR 171
SN+NFGM P+ PPS S +
Sbjct: 153 TFSNINFGMLPKGTTPPSGHSNK 168
BLAST of Lcy05g018220 vs. ExPASy TrEMBL
Match:
A0A6A4PCZ2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr15g0079321 PE=4 SV=1)
HSP 1 Score: 113.6 bits (283), Expect = 8.1e-22
Identity = 68/143 (47.55%), Postives = 87/143 (60.84%), Query Frame = 0
Query: 43 EKESNDNFIKH---PKGVHIPPSIILKE------------SKVYYGILPKGVRIPPSGPS 102
+KESN + I + KG+ PPS+ K+ S + YG+LPKGV +PPSGPS
Sbjct: 29 QKESNPSNIYYGMLVKGLPAPPSVPSKKTSLPPNSDIETFSNINYGMLPKGVPVPPSGPS 88
Query: 103 QRTSDYPPPPPRVPSFNLRKESIINFGILPKGVRIPPSRPSQTTSDYPPPPSHVPSIILE 162
+TSD PPPPP+ +++ S INFG+LPKG R PPS PS TSD PPPP P +E
Sbjct: 89 NKTSDPPPPPPK---YDIETFSNINFGMLPKG-RTPPSGPSNKTSDPPPPP---PKYDIE 148
Query: 163 KKSNLNFGMYPRVPIPPSAGSGR 171
SN+NFGM P+ PPS S +
Sbjct: 149 TFSNINFGMLPKGTTPPSGHSNK 164
BLAST of Lcy05g018220 vs. NCBI nr
Match:
KAG6603169.1 (hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 162.9 bits (411), Expect = 2.4e-36
Identity = 87/163 (53.37%), Postives = 107/163 (65.64%), Query Frame = 0
Query: 24 IYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHI---------------PPSIILKES 83
+Y+T+A+K+ D ++I E+E D +KHPKG+ I PP ++L+
Sbjct: 25 VYETDAKKVVEVDVYDTIREEELTDQMVKHPKGISISSSRSSQRTLFHLTPPPPVVLR-- 84
Query: 84 KVYYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGILPKGVRIPPSRPS 143
+LPKGV I PSGPSQRTSDYPPPPPR S L K+S INFG+LPKGV IPPS PS
Sbjct: 85 -----MLPKGVPISPSGPSQRTSDYPPPPPRASSVILSKQSKINFGMLPKGVPIPPSGPS 144
Query: 144 QTTSDYPPPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
Q TSDYPPPP S+IL K+S +NFGM P+ VPIPPS S R
Sbjct: 145 QRTSDYPPPPPRASSVILNKQSKINFGMLPKGVPIPPSGPSQR 180
BLAST of Lcy05g018220 vs. NCBI nr
Match:
XP_022967687.1 (actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima])
HSP 1 Score: 161.0 bits (406), Expect = 9.2e-36
Identity = 84/156 (53.85%), Postives = 105/156 (67.31%), Query Frame = 0
Query: 24 IYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHIPPSIILKES--------KVYYGIL 83
IY+T+A+ + D D++I E E D +++PKG+ I S + + + +G+L
Sbjct: 185 IYETDAKNVVEVDVDDNIREAELTDLIVQNPKGISISSSRSSQRTLFHRTPSPSLVFGML 244
Query: 84 PKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGILPKGVRIPPSRPSQTTSDYP 143
PKGV IPPS PSQRTSDYPPPPPR S L K S IN G+LP+GV IPPS PSQ TSDYP
Sbjct: 245 PKGVPIPPSRPSQRTSDYPPPPPRASSIILNKHSKINLGMLPRGVPIPPSGPSQRTSDYP 304
Query: 144 PPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
PPP H S+IL K+S +NFGM P+ VPIPPS S R
Sbjct: 305 PPPPHASSVILNKQSKINFGMLPKGVPIPPSGPSQR 340
BLAST of Lcy05g018220 vs. NCBI nr
Match:
XP_038882352.1 (uncharacterized protein LOC120073615 [Benincasa hispida])
HSP 1 Score: 156.8 bits (395), Expect = 1.7e-34
Identity = 92/175 (52.57%), Postives = 112/175 (64.00%), Query Frame = 0
Query: 4 SNSNVFLGAYVLIILGFHFTIYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHIPPSI 63
S SNVF GA I LG H TIYQT+A+ +F+ ++ +S +E E +D IKHPK HI S
Sbjct: 5 SYSNVFFGACAFIFLGLHSTIYQTDAKNVFVVEKGDSTIENELSDENIKHPKR-HIHFS- 64
Query: 64 ILKESKV-------YYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGIL 123
+ K ++ GIL K R+PPSG SQ TSD PPPPP V S L KES INF +L
Sbjct: 65 LGKYKRIPDLAPPFNLGILSKEERVPPSGLSQSTSDNPPPPPHVISIILHKESRINFRVL 124
Query: 124 PKGVRIPPSRPSQTTSDYPPPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
KG RIPPS PSQ TS+ PPPP H S+IL KK +NFG+ P+ + IPPS S R
Sbjct: 125 SKGNRIPPSGPSQRTSESPPPPPHALSVILHKKPGINFGILPKSMHIPPSGPSKR 177
BLAST of Lcy05g018220 vs. NCBI nr
Match:
KAA0040932.1 (proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK10605.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 142.5 bits (358), Expect = 3.4e-30
Identity = 89/176 (50.57%), Postives = 107/176 (60.80%), Query Frame = 0
Query: 1 MASSNSNVFLGAYVLIILGFHFTIYQTNARKIFIADEDNSIVEKESNDNFIKHPKGV-HI 60
M S +N+F A LI LG HF IY TNA++ F+ DEDNS +E + I HPK V H
Sbjct: 1 MVSVGTNIFFRACALIFLGLHFEIYLTNAKRSFVVDEDNSSLENVLRGDIINHPKKVAHF 60
Query: 61 ----PPSIILKESKVYYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFGI 120
P I GIL KG+R PPSG SQ TS+ PP P P L KES++NFGI
Sbjct: 61 SWPKPKKIPDLAPPFSLGILSKGIRTPPSGLSQGTSNNPPSPHVAPII-LHKESMVNFGI 120
Query: 121 LPKGVRIPPSRPSQTTSDYPPPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
LPKGVRIPPS PS+ TSD PPP S+ SI K+S + +G+ P+ V IPPS S R
Sbjct: 121 LPKGVRIPPSGPSRRTSDPPPPLSNFHSI---KESRIKYGILPKGVRIPPSGPSKR 172
BLAST of Lcy05g018220 vs. NCBI nr
Match:
KAA0043502.1 (proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK01137.1 proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 139.0 bits (349), Expect = 3.7e-29
Identity = 90/177 (50.85%), Postives = 104/177 (58.76%), Query Frame = 0
Query: 1 MASSNSNVFLGAYVLIILGFHFTIYQTNARKIFIADEDNSIVEKESNDNFIKHPKGVHIP 60
M S +SN+ +++LG HF IYQTN R +F EDNS+ E E N I HPK +I
Sbjct: 1 MMSISSNMTFKTCAIVLLGLHFGIYQTNGRNLFEVKEDNSVFENELKANSIIHPK-QYIH 60
Query: 61 PSIILKESK------VYYGILPKGVRIPPSGPSQRTSDYPPPPPRVPSFNLRKESIINFG 120
S+ + K +GI K VRIPPSGPSQR+SD PP PS L KES INFG
Sbjct: 61 FSLTKSKGKPEFDTHFRFGIFSKDVRIPPSGPSQRSSDSPPS----PSMILPKESRINFG 120
Query: 121 ILPKGVRIPPSRPSQTTSDYPPPPSHVPSIILEKKSNLNFGMYPR-VPIPPSAGSGR 171
ILPKG RIPPS PSQ SD P P PS L K SN+ FGM P+ IPPS S R
Sbjct: 121 ILPKGSRIPPSGPSQRFSDSPLP----PSTFLHKGSNMIFGMLPKGHHIPPSGPSKR 168
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1HRH7 | 4.4e-36 | 53.85 | actin cytoskeleton-regulatory complex protein PAN1-like OS=Cucurbita maxima OX=3... | [more] |
A0A5D3CGG1 | 1.6e-30 | 50.57 | Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... | [more] |
A0A5D3BP86 | 1.8e-29 | 50.85 | Proline-rich protein HaeIII subfamily 1-like OS=Cucumis melo var. makuwa OX=1194... | [more] |
A0A6A5P9E6 | 8.1e-22 | 47.55 | Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00004179 PE=4 SV=1 | [more] |
A0A6A4PCZ2 | 8.1e-22 | 47.55 | Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr15g0079321 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAG6603169.1 | 2.4e-36 | 53.37 | hypothetical protein SDJN03_03778, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022967687.1 | 9.2e-36 | 53.85 | actin cytoskeleton-regulatory complex protein PAN1-like [Cucurbita maxima] | [more] |
XP_038882352.1 | 1.7e-34 | 52.57 | uncharacterized protein LOC120073615 [Benincasa hispida] | [more] |
KAA0040932.1 | 3.4e-30 | 50.57 | proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK1060... | [more] |
KAA0043502.1 | 3.7e-29 | 50.85 | proline-rich protein HaeIII subfamily 1-like [Cucumis melo var. makuwa] >TYK0113... | [more] |
Match Name | E-value | Identity | Description | |