Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGTTTCTCCTCTGTCGATATAAATAGGATTTATCGGGTCAAAGCTCTTTTGCACCCGAGAGGAAATGATGCTATCAAAGATCCCTCGGCCAAGCAATTGAAGGAAGCACTTAAAGTAGTGACCAGGAAGGGAGTTCAATGGAAAGAATCTCAAACTAAAGTGAAGTCTTTAGTGCCAAGCGATCTGAAGCCTGAACCGGCATTTTGGCTTCATTTTATCAAGAATAGGTTGATGCCCACCACCCACGACAACACGATTTCAGTAGAAAGGGTCATGCTTCTTTACAGTATAATGAAGGGGCGGAAAATCAACATTGGGAGCATGATCCGAGAAGAGCTTCTCTCCTGTGGGAGAAAAAGAGCGGGGAAGCTATTCTTTGGGTCACTCATAACCCAATTATGTCAGAGGGTCAAGATTGTTCTTGGGAAGGATGAGGAACGACATTTTTACAGGCCCACGATTGACTTGCCTCTGATAGGGAAGCTACAGCAATACAACGCGTAG
mRNA sequence
ATGGTGAGTTTCTCCTCTGTCGATATAAATAGGATTTATCGGGTCAAAGCTCTTTTGCACCCGAGAGGAAATGATGCTATCAAAGATCCCTCGGCCAAGCAATTGAAGGAAGCACTTAAAGTAGTGACCAGGAAGGGAGTTCAATGGAAAGAATCTCAAACTAAAGTGAAGTCTTTAGTGCCAAGCGATCTGAAGCCTGAACCGGCATTTTGGCTTCATTTTATCAAGAATAGGTTGATGCCCACCACCCACGACAACACGATTTCAGTAGAAAGGGTCATGCTTCTTTACAGTATAATGAAGGGGCGGAAAATCAACATTGGGAGCATGATCCGAGAAGAGCTTCTCTCCTGTGGGAGAAAAAGAGCGGGGAAGCTATTCTTTGGGTCACTCATAACCCAATTATGTCAGAGGGTCAAGATTGTTCTTGGGAAGGATGAGGAACGACATTTTTACAGGCCCACGATTGACTTGCCTCTGATAGGGAAGCTACAGCAATACAACGCGTAG
Coding sequence (CDS)
ATGGTGAGTTTCTCCTCTGTCGATATAAATAGGATTTATCGGGTCAAAGCTCTTTTGCACCCGAGAGGAAATGATGCTATCAAAGATCCCTCGGCCAAGCAATTGAAGGAAGCACTTAAAGTAGTGACCAGGAAGGGAGTTCAATGGAAAGAATCTCAAACTAAAGTGAAGTCTTTAGTGCCAAGCGATCTGAAGCCTGAACCGGCATTTTGGCTTCATTTTATCAAGAATAGGTTGATGCCCACCACCCACGACAACACGATTTCAGTAGAAAGGGTCATGCTTCTTTACAGTATAATGAAGGGGCGGAAAATCAACATTGGGAGCATGATCCGAGAAGAGCTTCTCTCCTGTGGGAGAAAAAGAGCGGGGAAGCTATTCTTTGGGTCACTCATAACCCAATTATGTCAGAGGGTCAAGATTGTTCTTGGGAAGGATGAGGAACGACATTTTTACAGGCCCACGATTGACTTGCCTCTGATAGGGAAGCTACAGCAATACAACGCGTAG
Protein sequence
MVSFSSVDINRIYRVKALLHPRGNDAIKDPSAKQLKEALKVVTRKGVQWKESQTKVKSLVPSDLKPEPAFWLHFIKNRLMPTTHDNTISVERVMLLYSIMKGRKINIGSMIREELLSCGRKRAGKLFFGSLITQLCQRVKIVLGKDEERHFYRPTIDLPLIGKLQQYNA
Homology
BLAST of Lcy05g018170 vs. ExPASy TrEMBL
Match:
A0A2P5BNT0 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_223230 PE=4 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 8.8e-21
Identity = 57/165 (34.55%), Postives = 93/165 (56.36%), Query Frame = 0
Query: 2 VSFSSVDINRIYRVKALLHPRGNDAIKDPSAKQLKEALKVVTRKGVQWKESQTKVKSLVP 61
V S+ IN IY + L+ ++ ++D + +L L+ V G +W S V + +
Sbjct: 26 VPLSAEAINTIYGLGDLVDEH-SEFVEDITEPELAMVLETVAIAGAEWNVSSQGVYTCLR 85
Query: 62 SDLKPEPAFWLHFIKNRLMPTTHDNTISVERVMLLYSIMKGRKINIGSMIREELLSCGRK 121
S L P W HF+K+RL+PTTH +S ERV+LLYS++ G+ IN+G MI E+ +C +
Sbjct: 86 SSLNPPAKIWYHFLKSRLLPTTHGKIVSKERVLLLYSMLTGKSINMGRMIHREICACAAR 145
Query: 122 RAGKLFFGSLITQLCQRVKIVLGKDEERHFYRPTIDLPLIGKLQQ 167
++G LFF SLI ++C+ + +EE+ ID + ++ Q
Sbjct: 146 KSGALFFPSLIIRMCRNARAPYLVNEEKLHNTGEIDAIAVARIAQ 189
BLAST of Lcy05g018170 vs. ExPASy TrEMBL
Match:
A0A2P5CPE8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE=4 SV=1)
HSP 1 Score: 104.4 bits (259), Expect = 4.8e-19
Identity = 58/167 (34.73%), Postives = 91/167 (54.49%), Query Frame = 0
Query: 2 VSFSSVDINRIYRVKALL--HPRGNDAIKDPSAKQLKEALKVVTRKGVQWKESQTKVKSL 61
V S+ IN IY + + H +AI +P +L L+ V G +W S +
Sbjct: 16 VPLSTEAINTIYGLGDPVDEHSEFVEAITEP---ELATVLETVAIAGAEWNVSSQGAYTC 75
Query: 62 VPSDLKPEPAFWLHFIKNRLMPTTHDNTISVERVMLLYSIMKGRKINIGSMIREELLSCG 121
+ S L P W HF+K+RL+PTTH T+S ERV+LLYS++ G+ IN+G +I E+ +
Sbjct: 76 LRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHREICAYA 135
Query: 122 RKRAGKLFFGSLITQLCQRVKIVLGKDEERHFYRPTIDLPLIGKLQQ 167
+++G LFF SLIT++C + +EE+ ID + ++ Q
Sbjct: 136 ARKSGALFFPSLITRMCCNARAPYLVNEEKLHNTGEIDAIAVARIAQ 179
BLAST of Lcy05g018170 vs. ExPASy TrEMBL
Match:
A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)
HSP 1 Score: 104.4 bits (259), Expect = 4.8e-19
Identity = 54/165 (32.73%), Postives = 93/165 (56.36%), Query Frame = 0
Query: 2 VSFSSVDINRIYRVKALLHPRGNDAIKDPSAKQLKEALKVVTRKGVQWKESQTKVKSLVP 61
VS+S IN ++ + + ++ I++ + + L L+ V G +W S + +
Sbjct: 109 VSWSEEAINAVFGLGDPVDEH-SEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIR 168
Query: 62 SDLKPEPAFWLHFIKNRLMPTTHDNTISVERVMLLYSIMKGRKINIGSMIREELLSCGRK 121
S L P W HF+K+RL+PTTH T+S +R++LL+S++ G+ IN+G MI E+ +C +
Sbjct: 169 SALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAAR 228
Query: 122 RAGKLFFGSLITQLCQRVKIVLGKDEERHFYRPTIDLPLIGKLQQ 167
+ G LFF SLIT+LC+ + +EE+ ID + ++ Q
Sbjct: 229 KTGALFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAVARIAQ 272
BLAST of Lcy05g018170 vs. ExPASy TrEMBL
Match:
A0A2P5DAQ2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE=4 SV=1)
HSP 1 Score: 101.7 bits (252), Expect = 3.1e-18
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 0
Query: 24 NDAIKDPSAKQLKEALKVVTRKGVQWKESQTKVKSLVPSDLKPEPAFWLHFIKNRLMPTT 83
++ ++D + +L L+ V G +W S + + S L P W HF+K+RL+PTT
Sbjct: 151 SEFVEDITKPELVIVLETVAIVGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTT 210
Query: 84 HDNTISVERVMLLYSIMKGRKINIGSMIREELLSCGRKRAGKLFFGSLITQLCQRVKIVL 143
H T+S E V LLYS++ G+ IN+G MI E+ +C +++G LFF SLIT +C+ +
Sbjct: 211 HGKTVSKEHVSLLYSMLTGKSINVGRMIHREICACAARKSGALFFPSLITSMCRNTRAPY 270
Query: 144 GKDEER 150
+EE+
Sbjct: 271 LVNEEK 276
BLAST of Lcy05g018170 vs. ExPASy TrEMBL
Match:
A0A2P5AGA5 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335450 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18
Identity = 53/165 (32.12%), Postives = 91/165 (55.15%), Query Frame = 0
Query: 2 VSFSSVDINRIYRVKALLHPRGNDAIKDPSAKQLKEALKVVTRKGVQWKESQTKVKSLVP 61
VS+S IN ++ + + ++ I++ + L L+ V G +W S + +
Sbjct: 100 VSWSEEAINAVFGLGDPVDEH-SEFIENITEHDLITVLETVAVAGAEWNVSAQGAYTCIR 159
Query: 62 SDLKPEPAFWLHFIKNRLMPTTHDNTISVERVMLLYSIMKGRKINIGSMIREELLSCGRK 121
S L P W HF+K+ L+PTTH T+S +R++LL+S++ G+ IN+G MI E+ +C +
Sbjct: 160 SALTPAAKVWFHFLKSHLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAAR 219
Query: 122 RAGKLFFGSLITQLCQRVKIVLGKDEERHFYRPTIDLPLIGKLQQ 167
+ G LFF SLIT+LC+ + +EE+ ID + ++ Q
Sbjct: 220 KTGALFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAVARITQ 263
BLAST of Lcy05g018170 vs. NCBI nr
Match:
PON50458.1 (hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii])
HSP 1 Score: 110.2 bits (274), Expect = 1.8e-20
Identity = 57/165 (34.55%), Postives = 93/165 (56.36%), Query Frame = 0
Query: 2 VSFSSVDINRIYRVKALLHPRGNDAIKDPSAKQLKEALKVVTRKGVQWKESQTKVKSLVP 61
V S+ IN IY + L+ ++ ++D + +L L+ V G +W S V + +
Sbjct: 26 VPLSAEAINTIYGLGDLVDEH-SEFVEDITEPELAMVLETVAIAGAEWNVSSQGVYTCLR 85
Query: 62 SDLKPEPAFWLHFIKNRLMPTTHDNTISVERVMLLYSIMKGRKINIGSMIREELLSCGRK 121
S L P W HF+K+RL+PTTH +S ERV+LLYS++ G+ IN+G MI E+ +C +
Sbjct: 86 SSLNPPAKIWYHFLKSRLLPTTHGKIVSKERVLLLYSMLTGKSINMGRMIHREICACAAR 145
Query: 122 RAGKLFFGSLITQLCQRVKIVLGKDEERHFYRPTIDLPLIGKLQQ 167
++G LFF SLI ++C+ + +EE+ ID + ++ Q
Sbjct: 146 KSGALFFPSLIIRMCRNARAPYLVNEEKLHNTGEIDAIAVARIAQ 189
BLAST of Lcy05g018170 vs. NCBI nr
Match:
PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])
HSP 1 Score: 104.4 bits (259), Expect = 1.0e-18
Identity = 54/165 (32.73%), Postives = 93/165 (56.36%), Query Frame = 0
Query: 2 VSFSSVDINRIYRVKALLHPRGNDAIKDPSAKQLKEALKVVTRKGVQWKESQTKVKSLVP 61
VS+S IN ++ + + ++ I++ + + L L+ V G +W S + +
Sbjct: 109 VSWSEEAINAVFGLGDPVDEH-SEFIQNITQQDLITVLETVAAAGAEWNVSAQGAYTCIR 168
Query: 62 SDLKPEPAFWLHFIKNRLMPTTHDNTISVERVMLLYSIMKGRKINIGSMIREELLSCGRK 121
S L P W HF+K+RL+PTTH T+S +R++LL+S++ G+ IN+G MI E+ +C +
Sbjct: 169 SALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAAR 228
Query: 122 RAGKLFFGSLITQLCQRVKIVLGKDEERHFYRPTIDLPLIGKLQQ 167
+ G LFF SLIT+LC+ + +EE+ ID + ++ Q
Sbjct: 229 KTGALFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAVARIAQ 272
BLAST of Lcy05g018170 vs. NCBI nr
Match:
PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])
HSP 1 Score: 104.4 bits (259), Expect = 1.0e-18
Identity = 58/167 (34.73%), Postives = 91/167 (54.49%), Query Frame = 0
Query: 2 VSFSSVDINRIYRVKALL--HPRGNDAIKDPSAKQLKEALKVVTRKGVQWKESQTKVKSL 61
V S+ IN IY + + H +AI +P +L L+ V G +W S +
Sbjct: 16 VPLSTEAINTIYGLGDPVDEHSEFVEAITEP---ELATVLETVAIAGAEWNVSSQGAYTC 75
Query: 62 VPSDLKPEPAFWLHFIKNRLMPTTHDNTISVERVMLLYSIMKGRKINIGSMIREELLSCG 121
+ S L P W HF+K+RL+PTTH T+S ERV+LLYS++ G+ IN+G +I E+ +
Sbjct: 76 LRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHREICAYA 135
Query: 122 RKRAGKLFFGSLITQLCQRVKIVLGKDEERHFYRPTIDLPLIGKLQQ 167
+++G LFF SLIT++C + +EE+ ID + ++ Q
Sbjct: 136 ARKSGALFFPSLITRMCCNARAPYLVNEEKLHNTGEIDAIAVARIAQ 179
BLAST of Lcy05g018170 vs. NCBI nr
Match:
PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])
HSP 1 Score: 101.7 bits (252), Expect = 6.5e-18
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 0
Query: 24 NDAIKDPSAKQLKEALKVVTRKGVQWKESQTKVKSLVPSDLKPEPAFWLHFIKNRLMPTT 83
++ ++D + +L L+ V G +W S + + S L P W HF+K+RL+PTT
Sbjct: 151 SEFVEDITKPELVIVLETVAIVGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTT 210
Query: 84 HDNTISVERVMLLYSIMKGRKINIGSMIREELLSCGRKRAGKLFFGSLITQLCQRVKIVL 143
H T+S E V LLYS++ G+ IN+G MI E+ +C +++G LFF SLIT +C+ +
Sbjct: 211 HGKTVSKEHVSLLYSMLTGKSINVGRMIHREICACAARKSGALFFPSLITSMCRNTRAPY 270
Query: 144 GKDEER 150
+EE+
Sbjct: 271 LVNEEK 276
BLAST of Lcy05g018170 vs. NCBI nr
Match:
PON35554.1 (hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii])
HSP 1 Score: 101.3 bits (251), Expect = 8.5e-18
Identity = 53/165 (32.12%), Postives = 91/165 (55.15%), Query Frame = 0
Query: 2 VSFSSVDINRIYRVKALLHPRGNDAIKDPSAKQLKEALKVVTRKGVQWKESQTKVKSLVP 61
VS+S IN ++ + + ++ I++ + L L+ V G +W S + +
Sbjct: 100 VSWSEEAINAVFGLGDPVDEH-SEFIENITEHDLITVLETVAVAGAEWNVSAQGAYTCIR 159
Query: 62 SDLKPEPAFWLHFIKNRLMPTTHDNTISVERVMLLYSIMKGRKINIGSMIREELLSCGRK 121
S L P W HF+K+ L+PTTH T+S +R++LL+S++ G+ IN+G MI E+ +C +
Sbjct: 160 SALTPAAKVWFHFLKSHLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAAR 219
Query: 122 RAGKLFFGSLITQLCQRVKIVLGKDEERHFYRPTIDLPLIGKLQQ 167
+ G LFF SLIT+LC+ + +EE+ ID + ++ Q
Sbjct: 220 KTGALFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAVARITQ 263
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A2P5BNT0 | 8.8e-21 | 34.55 | Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... | [more] |
| A0A2P5CPE8 | 4.8e-19 | 34.73 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE... | [more] |
| A0A2P5BCG4 | 4.8e-19 | 32.73 | Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... | [more] |
| A0A2P5DAQ2 | 3.1e-18 | 37.30 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_080440 PE... | [more] |
| A0A2P5AGA5 | 4.1e-18 | 32.12 | Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| PON50458.1 | 1.8e-20 | 34.55 | hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii] | [more] |
| PON46472.1 | 1.0e-18 | 32.73 | hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii] | [more] |
| PON62892.1 | 1.0e-18 | 34.73 | hypothetical protein PanWU01x14_135680 [Parasponia andersonii] | [more] |
| PON70375.1 | 6.5e-18 | 37.30 | hypothetical protein PanWU01x14_080440 [Parasponia andersonii] | [more] |
| PON35554.1 | 8.5e-18 | 32.12 | hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
