Lcy05g018060 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g018060
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionNon-ltr retroelement reverse transcriptase
LocationChr05: 34059133 .. 34060512 (-)
RNA-Seq ExpressionLcy05g018060
SyntenyLcy05g018060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTGGGGTAGAGACTTATTGCTTAAAGGGCTAAGATATAGGGTTGGGGATGGAGAGAATATATATATGTTTAAAGACCCCTGGATTCCTAAGGAGTCTACTTTCAAGCCTATTTGTACAGATAGGTCCTTGATTAATGCTAAGGTATCAGAGTTTACTGCACCTTCAGGAGATTGGGATCTGGAAAAATTAAAAGGTTCTGTTATGGATTTCGATTATGATCTAATTAGAAACATTCCTATTAATAAGAATTTGAAAGACAAAATGATTTGGCATTACGATAAAACAAGTAGATTTTCAGTGAATAGTGATATAGGCTTTTCCAAAAAATTAAAATTGATGGTAAATCCACTAGTAATAGTCCTATGGAAAGAATCTGGAACAACATTTGGAAATTAAGAATACCCTATAAAATTAAACATTTTTGTTGGGAAGCTCTAAAAGAATCTCTTCCTAAAAAATTTTAATCTTCAACAGAGAGGTATTAATATTTCGAACCTATGCCCTGTTTGTGACTCCCAAATAGAGAACACAGATCATTGTCTTTTTAGTTGTTTTAGAGCTAAAGATGTCTGGAATCTAACCTTTAATAATGTGTTTTTGGAGGAGGAGGAGTCCTTCGGGAGTTTCATCGACAGGTGGATCAGGATCGAATCGACTTTATCCCGGGATGAGCTAGAGTTGGCTACGGTCACATGCTGGGCGATTTGGTGGGACAGGAACAAGCTGGTCCATGGAGAAGCCATTTCCCCTGCATTAATCAAAAGTAACTGGATTAAGAAGTATATTGAATCCTTCAAGAGGGCAAATTCCATAAGAGATTCAAATCGTGTGTCCAATCGAACTCCAGATTCAAGTCAGGAAAACCCTACCTGTTGGGTTCCTCCCTCTGAAGATTTCTGGAAGTTAAATGTCGATGCTGCATGTATCCATCTACCCCCTTCTACGGGTCTGGGAACGTTTTGTAGGAATAAGGATGGTGATGTGATGATTGCCTCTTCTCACTTCTTTGATTTCTACATGGATCCTCTCAGGGTTGAGGTTAAGGCGATTTGGGAAGGAATGAAGAATGCATTGTCGTTGGGAAGATTAAAACTGAAAGTAGAATCAGATAGTTTAATGGCAATCAAGTTTATCAATAAGGAGTTAGTGGTCTGGGATGATGTGGAGGCTGAGGTTGCTAAAATTTGGGATTTAATCCCCTGTTTTTCAGTGATTGATTTTTCGTATATACCCAGGAATTGTAGTAAAGCAGCAGATGTGGTGGCAAAAGCTGCTAGATCATCAGGGGTTAATACAACTTGGATGGGTCAATTCCCAAGTTGGCTTTGTAGGGTGGTCCAGATGGACTTTTCTAATTCTGCCCATGTGGCGTAA

mRNA sequence

ATGCTTTGGGGTAGAGACTTATTGCTTAAAGGGCTAAGATATAGGGTTGGGGATGGAGAGAATATATATATGTTTAAAGACCCCTGGATTCCTAAGGAGTCTACTTTCAAGCCTATTTGTACAGATAGGTCCTTGATTAATGCTAAGGTATCAGAGTTTACTGCACCTTCAGGAGATTGGGATCTGGAAAAATTAAAAGAGAACACAGATCATTGTCTTTTTAGTTGTTTTAGAGCTAAAGATGTCTGGAATCTAACCTTTAATAATGTGTTTTTGGAGGAGGAGGAGTCCTTCGGGAGTTTCATCGACAGGTGGATCAGGATCGAATCGACTTTATCCCGGGATGAGCTAGAGTTGGCTACGGTCACATGCTGGGCGATTTGGTGGGACAGGAACAAGCTGGTCCATGGAGAAGCCATTTCCCCTGCATTAATCAAAAGTAACTGGATTAAGAAGTATATTGAATCCTTCAAGAGGGCAAATTCCATAAGAGATTCAAATCGTGTGTCCAATCGAACTCCAGATTCAAGTCAGGAAAACCCTACCTGTTGGGTTCCTCCCTCTGAAGATTTCTGGAAGTTAAATGTCGATGCTGCATGTATCCATCTACCCCCTTCTACGGGTCTGGGAACGTTTTGTAGGAATAAGGATGGTGATGTGATGATTGCCTCTTCTCACTTCTTTGATTTCTACATGGATCCTCTCAGGGTTGAGGTTAAGGCGATTTGGGAAGGAATGAAGAATGCATTGTCGTTGGGAAGATTAAAACTGAAAGTAGAATCAGATAGTTTAATGGCAATCAAGTTTATCAATAAGGAGTTAGTGGTCTGGGATGATGTGGAGGCTGAGGTTGCTAAAATTTGGGATTTAATCCCCTGTTTTTCAGTGATTGATTTTTCGTATATACCCAGGAATTGTAGTAAAGCAGCAGATGTGGTGGCAAAAGCTGCTAGATCATCAGGGGTTAATACAACTTGGATGGGTCAATTCCCAAGTTGGCTTTGTAGGGTGGTCCAGATGGACTTTTCTAATTCTGCCCATGTGGCGTAA

Coding sequence (CDS)

ATGCTTTGGGGTAGAGACTTATTGCTTAAAGGGCTAAGATATAGGGTTGGGGATGGAGAGAATATATATATGTTTAAAGACCCCTGGATTCCTAAGGAGTCTACTTTCAAGCCTATTTGTACAGATAGGTCCTTGATTAATGCTAAGGTATCAGAGTTTACTGCACCTTCAGGAGATTGGGATCTGGAAAAATTAAAAGAGAACACAGATCATTGTCTTTTTAGTTGTTTTAGAGCTAAAGATGTCTGGAATCTAACCTTTAATAATGTGTTTTTGGAGGAGGAGGAGTCCTTCGGGAGTTTCATCGACAGGTGGATCAGGATCGAATCGACTTTATCCCGGGATGAGCTAGAGTTGGCTACGGTCACATGCTGGGCGATTTGGTGGGACAGGAACAAGCTGGTCCATGGAGAAGCCATTTCCCCTGCATTAATCAAAAGTAACTGGATTAAGAAGTATATTGAATCCTTCAAGAGGGCAAATTCCATAAGAGATTCAAATCGTGTGTCCAATCGAACTCCAGATTCAAGTCAGGAAAACCCTACCTGTTGGGTTCCTCCCTCTGAAGATTTCTGGAAGTTAAATGTCGATGCTGCATGTATCCATCTACCCCCTTCTACGGGTCTGGGAACGTTTTGTAGGAATAAGGATGGTGATGTGATGATTGCCTCTTCTCACTTCTTTGATTTCTACATGGATCCTCTCAGGGTTGAGGTTAAGGCGATTTGGGAAGGAATGAAGAATGCATTGTCGTTGGGAAGATTAAAACTGAAAGTAGAATCAGATAGTTTAATGGCAATCAAGTTTATCAATAAGGAGTTAGTGGTCTGGGATGATGTGGAGGCTGAGGTTGCTAAAATTTGGGATTTAATCCCCTGTTTTTCAGTGATTGATTTTTCGTATATACCCAGGAATTGTAGTAAAGCAGCAGATGTGGTGGCAAAAGCTGCTAGATCATCAGGGGTTAATACAACTTGGATGGGTCAATTCCCAAGTTGGCTTTGTAGGGTGGTCCAGATGGACTTTTCTAATTCTGCCCATGTGGCGTAA

Protein sequence

MLWGRDLLLKGLRYRVGDGENIYMFKDPWIPKESTFKPICTDRSLINAKVSEFTAPSGDWDLEKLKENTDHCLFSCFRAKDVWNLTFNNVFLEEEESFGSFIDRWIRIESTLSRDELELATVTCWAIWWDRNKLVHGEAISPALIKSNWIKKYIESFKRANSIRDSNRVSNRTPDSSQENPTCWVPPSEDFWKLNVDAACIHLPPSTGLGTFCRNKDGDVMIASSHFFDFYMDPLRVEVKAIWEGMKNALSLGRLKLKVESDSLMAIKFINKELVVWDDVEAEVAKIWDLIPCFSVIDFSYIPRNCSKAADVVAKAARSSGVNTTWMGQFPSWLCRVVQMDFSNSAHVA
Homology
BLAST of Lcy05g018060 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.0e-47
Identity = 132/461 (28.63%), Postives = 189/461 (41.00%), Query Frame = 0

Query: 2    LWGRDLLLKGLRYRVGDGENIYMFKDPWIPKESTFKPICTDRSLINAKVSEFTAPSGDWD 61
            LWGRDLL+KGLR RVG+G  I  F DPW+P+ +TFKP+  +   ++  V+ F    G+WD
Sbjct: 1005 LWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFKPLRFNNGALDTTVASFITADGNWD 1064

Query: 62   LEKL-------------------------------------------------------- 121
            +  +                                                        
Sbjct: 1065 VTSISHSFCNEDRDLILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSAS 1124

Query: 122  -------------------------------------------------------KENTD 181
                                                                   +E+  
Sbjct: 1125 TNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPACTICGDRRESII 1184

Query: 182  HCLFSCFRAKDVWNLTFNNVFLEEEESFGSFIDRWIRIESTLSRDELELATVTCWAIWWD 241
            H  F C RA+ +W   F  +     E   SF++ W  +   L   +L LA +T W IW D
Sbjct: 1185 HAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWND 1244

Query: 242  RNKLVHGEAISPALIKSNWIKKYIESFKRANSIRDSNRVSNRTPDSSQENPTCWVPPSED 301
            RN L+HG+ +SP   K  W+  +++S  +A      +  S RT  + +     W P S  
Sbjct: 1245 RNSLIHGKQVSPVEFKCEWLTPFLDSHSQA----QMSNYSPRTQSNHRPVVQYWRPSSSV 1304

Query: 302  FWKLNVDAACIHLPPSTGLGTFCRNKDGDVMIASSHFFDFYMDPLRVEVKAIWEGMKNAL 350
              KLN DAAC     ST  G   R+    ++ A+S    F + PL  E++ I EG+K A 
Sbjct: 1305 SLKLNTDAAC--RGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAA 1364

BLAST of Lcy05g018060 vs. ExPASy TrEMBL
Match: A0A803QGR4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.7e-31
Identity = 87/346 (25.14%), Postives = 161/346 (46.53%), Query Frame = 0

Query: 1   MLWGRDLLLKGLRYRVGDGENIYMFKDPWIPKESTFKPIC-TDRSLINAKVSEFTAPSGD 60
           +LWGRDLL  GLR+++G+G  + +  + W+P+ S+F P+C T      A   +       
Sbjct: 426 ILWGRDLLTAGLRWKIGEGRTVRIGSNLWVPEPSSFLPLCYTGPEYATALFRQKVVTDAI 485

Query: 61  WDL-EKLKENTDHCLFSCFRAKDVWNLTFNNVFLEEEESFGSFIDRWIRIESTLSRDELE 120
             + ++  E+  H +F C  A+ VW    + VF        +  D  + + S  ++ ++E
Sbjct: 486 CSICKQAWESIGHAMFDCKYARVVWR-CLDFVFDRNLARSMNKGDYLVHLSSIYTKTDME 545

Query: 121 LATVTCWAIWWDRNKLVHGEAISPALIKSNWIKKYIESFKRANS-IRDSNRVSNRTPDSS 180
               T W+IW++RN +VHG+A   A +   +   Y++++ RA +  +     ++   ++ 
Sbjct: 546 FILCTMWSIWYERNNVVHGKAEKLAKLAFPFTANYLQNYHRARAKYQSPTATASSNAEAL 605

Query: 181 QENPTCWVPPSEDFWKLNVDAACIHLPPSTGLGTFCRNKDGDVMIASSHFFDFYMDPLRV 240
              P  W PP  +  KLNVDA C       G+G   R+  G V++A S           +
Sbjct: 606 PSEP--WQPPEIEILKLNVDATCDKAKNIIGIGAIIRDAYGRVIVAFSKLIIGNFTSHEM 665

Query: 241 EVKAIWEGMKNALSLGRLKLKVESDSLMAIKFINKELVVWDDVEAEVAKIWDLIPCFSVI 300
           E KA++  +  A+ L +L  ++E+D+LM    +N         +  +  I  L+  F  +
Sbjct: 666 EAKALFYSLNLAIQLQQLIGQIETDALMVSNALNASFSAISSFKDLIVDITSLLSFFHRV 725

Query: 301 DFSYIPRNCSKAADVVAKAARSSGVNTTWMGQFPSWLCRVVQMDFS 344
             +++ R+ + A   +A+ A       +W+   P     V+  D S
Sbjct: 726 SINHVKRSANMATHSLARYALELDETCSWLEDLPPSFHSVIVNDIS 768

BLAST of Lcy05g018060 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.6e-30
Identity = 76/209 (36.36%), Postives = 116/209 (55.50%), Query Frame = 0

Query: 67  ENTDHCLFSCFRAKDVWNLTFNNVFLEEEESFGSFIDRWIRIESTLSRDELELATVTCWA 126
           E T H +  C RAK +WNL F ++F        SF+D W+ +   L+  + +LA  T WA
Sbjct: 2   EXTSHXIXLCKRAKKIWNLMFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTXWA 61

Query: 127 IWWDRNKLVHGEAISPALIKSNWIKKYIESFKRANSIRDSNRVSNRTPDSSQENPTC-WV 186
           IW DRN   HG ++S   ++ NWI  Y +++ +A   +++ R+S +   SS   P+C W+
Sbjct: 62  IWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQA---QENKRISPQ--QSSVPPPSCRWL 121

Query: 187 PPSEDFWKLNVDAACIHLPPSTGLGTFCRNKDGDVMIASSHFFDFYMDPLRVEVKAIWEG 246
           PP +   K+N DAAC     STGLG   R+  G +++A S F    ++PL  E++ I E 
Sbjct: 122 PPRDSAMKVNSDAAC--RSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEA 181

Query: 247 MKNALSLGRLKLKVESDSLMAIKFINKEL 275
           +K A S    +L VESD   AI+ +  +L
Sbjct: 182 LKLAASRSYTRLVVESDCQEAIRLVQGDL 203

BLAST of Lcy05g018060 vs. ExPASy TrEMBL
Match: A0A803NW04 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.4e-28
Identity = 108/405 (26.67%), Postives = 168/405 (41.48%), Query Frame = 0

Query: 3    WGRDLLLKGLRYRVGDGENIYMFKDPWIPKESTFKPICTDRSLINAKVSEFTAPSGDWDL 62
            WGR+L +KGLRY++G+G ++    DPWIP  S F PI  D    +  VS F   + +W++
Sbjct: 801  WGRELFIKGLRYKIGNGYHVSAATDPWIPAISNFCPITYD-GPPSMLVSYFITQAREWNI 860

Query: 63   EKLKE-----NTDHCL---FSCFRAKD--VWNLTFNNVFL-------------EEEESFG 122
              LK      + D  L    S F  +D  +W+ T   ++              +E +S  
Sbjct: 861  SLLKAHFGDIDVDRILTIPLSFFPTQDRLIWHYTTTGIYTVKSGFHLASDLNDKEFDSAS 920

Query: 123  SFIDRW---------------------------IRIESTLSRDELELATVTCWAIWWDRN 182
            +    W                             + + LS++E EL     W IW DRN
Sbjct: 921  NSHQEWHAKDIWNQFHFPIDFAKARHLANGDYLFHLATLLSQEEFELLLCIMWVIWIDRN 980

Query: 183  KLVHGEAISPALIKSNWIKKYIESFKRANSIR-------------DSNRVSNRTPDSSQE 242
            K++HG+    A   + +   Y+ ++ +ANS +              S+  ++    + + 
Sbjct: 981  KIIHGDMNKDATAMALYAITYMNNYIKANSTKPPTATLSSPSAANPSHTATDANVAAMKA 1040

Query: 243  NPTC---WVPPSEDFWKLNVDAACIHLPPSTGLGTFCRNKDGDVMIASSHFFDFYMDPLR 302
             PT    W PP  +  KLNVDAA        G+G   RN DG V+ A S           
Sbjct: 1041 RPTAGVPWTPPLLNKLKLNVDAAINTTDKILGIGAIVRNHDGQVVAALSKPVQGCFRSDE 1100

Query: 303  VEVKAIWEGMKNALSLGRLKLKVESDSLMAIKFINKELVVWDDVEAEVAKIWDLIPCFSV 342
            +E KA++  +     L      VE+D+L     IN            +  +  L+  F  
Sbjct: 1101 MEAKALFHALNWITQLSLKIDYVETDALRVSSAINNASFDLSSFSDIILDVRCLLSFFPG 1160

BLAST of Lcy05g018060 vs. ExPASy TrEMBL
Match: A0A803PWX1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 5.8e-27
Identity = 98/415 (23.61%), Postives = 172/415 (41.45%), Query Frame = 0

Query: 1    MLWGRDLLLKGLRYRVGDGENIYMFKDPWIPKESTFK-----PICTDRSLINAK------ 60
            ++WG+ ++ KG R+R+G+G ++ +  DPW+P+  TFK     P+     +I+ K      
Sbjct: 1459 LVWGKKIIQKGYRWRIGNGNSVRVIDDPWLPRPVTFKIYDKPPLPDQLYVIDLKKVRMGV 1518

Query: 61   -----------------VSEFTAPSGDW--DLEKLK------------------------ 120
                             V   T  +  W   L KLK                        
Sbjct: 1519 FARSGYHDGGTPYKSRDVQSDTQAAEKWWSKLWKLKIPPKVKHFVWKMAHSWIPTNSALA 1578

Query: 121  ------------------ENTDHCLFSCFRAKDVWNLT--FNNVFLEEEESFGSFIDRWI 180
                              EN  H L+ C   ++VWN    +  +  +  E   +F+   +
Sbjct: 1579 HRHIQVEPYCKRCSTGAYENVFHALWGCRVNREVWNGAGFYGRLQRQGREDVLAFL---M 1638

Query: 181  RIESTLSRDELELATVTCWAIWWDRNKLVHGEAISPALIKSNWIKKYIESFKRANSIRDS 240
            R+ S  ++DE E   +  W +W+ RN + HG     A    +W  K++  F+  N    +
Sbjct: 1639 RVSSLFTKDEFEFFLILSWNLWYIRNSVNHGGHKPQASAILDWCSKFLHEFRENNV---A 1698

Query: 241  NRVSNRTPDSSQENPTCWVPPSEDFWKLNVDAACIHLPPSTGLGTFCRNKDGDVMIASSH 300
             +V  R  ++       W PP    +K+NVDA         GL +  R+ +G VM+A++ 
Sbjct: 1699 VQVGQRREEAK------WTPPRRGSFKVNVDAGIKAGENLAGLSSVVRDHEGRVMVAATR 1758

Query: 301  FFDFYMDPLRVEVKAIWEGMKNALSLGRLKLKVESDSLMAIKFINKELVVWDDVEAEVAK 342
            F +    PL+ E++AI  G++  +        VESD L A+  + KE     DV+  +A+
Sbjct: 1759 FVEKKTSPLQGELQAILLGIQTGIQRNLPSFSVESDCLQAVNLVMKEEEGCRDVDGLIAQ 1818

BLAST of Lcy05g018060 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 199.1 bits (505), Expect = 6.2e-47
Identity = 132/461 (28.63%), Postives = 189/461 (41.00%), Query Frame = 0

Query: 2    LWGRDLLLKGLRYRVGDGENIYMFKDPWIPKESTFKPICTDRSLINAKVSEFTAPSGDWD 61
            LWGRDLL+KGLR RVG+G  I  F DPW+P+ +TFKP+  +   ++  V+ F    G+WD
Sbjct: 1005 LWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFKPLRFNNGALDTTVASFITADGNWD 1064

Query: 62   LEKL-------------------------------------------------------- 121
            +  +                                                        
Sbjct: 1065 VTSISHSFCNEDRDLILSMPISSYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSAS 1124

Query: 122  -------------------------------------------------------KENTD 181
                                                                   +E+  
Sbjct: 1125 TNYRGTQWNSIWKLTVPTKIKIFIWRSAHEHIPTAQNLLLRGIGELPACTICGDRRESII 1184

Query: 182  HCLFSCFRAKDVWNLTFNNVFLEEEESFGSFIDRWIRIESTLSRDELELATVTCWAIWWD 241
            H  F C RA+ +W   F  +     E   SF++ W  +   L   +L LA +T W IW D
Sbjct: 1185 HAFFHCKRARQIWRTLFPFLTCLSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWND 1244

Query: 242  RNKLVHGEAISPALIKSNWIKKYIESFKRANSIRDSNRVSNRTPDSSQENPTCWVPPSED 301
            RN L+HG+ +SP   K  W+  +++S  +A      +  S RT  + +     W P S  
Sbjct: 1245 RNSLIHGKQVSPVEFKCEWLTPFLDSHSQA----QMSNYSPRTQSNHRPVVQYWRPSSSV 1304

Query: 302  FWKLNVDAACIHLPPSTGLGTFCRNKDGDVMIASSHFFDFYMDPLRVEVKAIWEGMKNAL 350
              KLN DAAC     ST  G   R+    ++ A+S    F + PL  E++ I EG+K A 
Sbjct: 1305 SLKLNTDAAC--RGASTSFGCIIRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAA 1364

BLAST of Lcy05g018060 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-29
Identity = 76/209 (36.36%), Postives = 116/209 (55.50%), Query Frame = 0

Query: 67  ENTDHCLFSCFRAKDVWNLTFNNVFLEEEESFGSFIDRWIRIESTLSRDELELATVTCWA 126
           E T H +  C RAK +WNL F ++F        SF+D W+ +   L+  + +LA  T WA
Sbjct: 2   EXTSHXIXLCKRAKKIWNLMFPSLFTSPINGNLSFMDIWLLLYDKLNPQQRDLAAFTXWA 61

Query: 127 IWWDRNKLVHGEAISPALIKSNWIKKYIESFKRANSIRDSNRVSNRTPDSSQENPTC-WV 186
           IW DRN   HG ++S   ++ NWI  Y +++ +A   +++ R+S +   SS   P+C W+
Sbjct: 62  IWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQA---QENKRISPQ--QSSVPPPSCRWL 121

Query: 187 PPSEDFWKLNVDAACIHLPPSTGLGTFCRNKDGDVMIASSHFFDFYMDPLRVEVKAIWEG 246
           PP +   K+N DAAC     STGLG   R+  G +++A S F    ++PL  E++ I E 
Sbjct: 122 PPRDSAMKVNSDAAC--RSTSTGLGLIIRDHFGVLLVAKSMFLPMPLNPLFAEIRGILEA 181

Query: 247 MKNALSLGRLKLKVESDSLMAIKFINKEL 275
           +K A S    +L VESD   AI+ +  +L
Sbjct: 182 LKLAASRSYTRLVVESDCQEAIRLVQGDL 203

BLAST of Lcy05g018060 vs. NCBI nr
Match: XP_030487365.1 (uncharacterized protein LOC115704292 [Cannabis sativa])

HSP 1 Score: 133.3 bits (334), Expect = 4.1e-27
Identity = 103/387 (26.61%), Postives = 161/387 (41.60%), Query Frame = 0

Query: 3   WGRDLLLKGLRYRVGDGENIYMFKDPWIPKESTFKPICTDRSLINAKVSEFTAPSGDWDL 62
           WG++LLLKGLR+++GDG ++   KDPWIP  + FKP+    S  +  VS F      W++
Sbjct: 38  WGKELLLKGLRFKIGDGNHVDCGKDPWIPSHNEFKPVSFSGS-NSMPVSNFITADRVWNV 97

Query: 63  EKL------------------------------------KENTDHCLFSCFRAKDVWNLT 122
           + L                                       + H LF C  AK++W LT
Sbjct: 98  QLLSCYFQQIDIDRILSILLSYFAGHDRLVWHHSPNGIYSVKSGHALFGCKHAKNIWKLT 157

Query: 123 -FNNVFLEEEESFGSFIDRWIRIESTLSRDELELATVTCWAIWWDRNKLVHGEAISPALI 182
            F   F +    F    D    + +T  + E E      W IW DRNK+VHG        
Sbjct: 158 KFQIDFRQAHNMFNG--DYLYHLSATYQQHEFETLLCVLWGIWTDRNKVVHGGIPRQPTA 217

Query: 183 KSNWIKKYIESFKRANS-IRDSNRVSNRTPDSSQENPTC------WVPPSEDFWKLNVDA 242
              +  ++ E F R  S +R     SN  P  SQ +P+       W PP  + +KLNVDA
Sbjct: 218 IVQYATRFYEDFNRLKSHVRPGAVTSNNHP--SQPSPSINQHVQKWRPPQTNGFKLNVDA 277

Query: 243 ACIHLPPSTGLGTFCRNKDGDVMIASSHFFDFYMDPLRVEVKAIWEGMKNALSLGRLKLK 302
           A        G+G   R+    V+ A S           +E KA++  +            
Sbjct: 278 ATDLEQKKLGIGAILRDHTDTVVAALSKVVQGSFKSDVMEAKALFHAVIWVSQSQFPLTH 337

Query: 303 VESDSLM---AIKFINKELVVWDDVEAEVAKIWDLIPCFSVIDFSYIPRNCSKAADVVAK 343
           +E+D+     A+  ++ +L  + D+   +  I  L+  F  +  +++ R  ++AA  +AK
Sbjct: 338 IETDASRVSNALNRLDSDLSCFSDI---IMDIRCLLSFFPQVLVTHVKRTANQAAHGLAK 397

BLAST of Lcy05g018060 vs. NCBI nr
Match: XP_030505068.1 (uncharacterized protein LOC115720043 [Cannabis sativa])

HSP 1 Score: 129.0 bits (323), Expect = 7.8e-26
Identity = 96/409 (23.47%), Postives = 161/409 (39.36%), Query Frame = 0

Query: 1    MLWGRDLLLKGLRYRVGDGENIYMFKDPWIPKESTFKPICTDRSLINAKVSEFTAPSGDW 60
            ++WG++LL+KGLR++VGDG  I+   +PW+P  +TFKP+         KVS     S  W
Sbjct: 923  IMWGKELLIKGLRWKVGDGSQIHCASEPWLPGITTFKPLVFKGDDNTLKVSALILDSRCW 982

Query: 61   ------------DLEKL------------------------------------------- 120
                        D++K+                                           
Sbjct: 983  NSPLLKYLFLDSDVDKILNIPLALDDHQDCLMWHHESHGNYSVKSGYNLALSLEEQSPSV 1042

Query: 121  ---------------------KENTDHCLFSCFRAKDVWNLTFNNV--FLEEEESFGSFI 180
                                 KE+  H LF C RA+ VW L+   +   +    S    I
Sbjct: 1043 SEILHTRHIAASANSSICNRDKESITHALFFCKRARQVWQLSAFGLDKIISPHMSLNEII 1102

Query: 181  DRWIRIESTLSRDELELATVTCWAIWWDRNKLVHGEAISPALIKSNWIKKYIESFKRANS 240
               + + +T S  +LE      W+IW +RN+ +HG    PA +   +   Y+  F  A  
Sbjct: 1103 ---LHLAATWSSSKLEQFATLLWSIWNERNREIHGSKPKPADVLFYFALSYLAEFHSARK 1162

Query: 241  IRDSNRVSNRTPDSSQENPTCWVPPSEDFWKLNVDAACIHLPPSTGLGTFCRNKDGDVMI 300
                N ++ R  +SS    + W+ P     KLN DAA   +   +G G   ++ +GD++ 
Sbjct: 1163 DPAINSLTLRNQNSSVSKDSPWMNPPSGRLKLNTDAAVDKMKHLSGFGAILQSSNGDIVA 1222

Query: 301  ASSHFFDFYMDPLRVEVKAIWEGMKNALSLGRLKLKVESDSLMAIKFINKELVVWDDVEA 332
              +  +     P  +EV A+   +K    L      +E+DS + +  +        +  +
Sbjct: 1223 TMAAPYQGCFKPEIMEVMALMHSLKWLQELDLPVHFIETDSQLVVNGLKPSKRPVSEFHS 1282

BLAST of Lcy05g018060 vs. NCBI nr
Match: XP_030498035.1 (uncharacterized protein LOC115713693 [Cannabis sativa])

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-25
Identity = 107/360 (29.72%), Postives = 157/360 (43.61%), Query Frame = 0

Query: 3   WGRDLLLKGLRYRVGDGENIYMFKDPW-------IPKE---------STFKPICTDRSLI 62
           WGRD   K    + G        KD W       +P +           F P+    +L 
Sbjct: 248 WGRDCCSKDFDTKWGMESASTSHKDLWKLFWNLKLPSKIKIFAWRVIQNFLPVAA--ALY 307

Query: 63  NAKVSEFTAPSGDWDLEKLKENTDHCLFSCFRAKDVW-NLTFNNVFLEEEESFGSFIDRW 122
             KV    A S      + +E+  H LF C  AK VW +  +   F + +   G   D  
Sbjct: 308 KKKVLTSAACS---LCSQARESIGHALFQCKHAKAVWRHFNYPIDFNKAQNMVGG--DYI 367

Query: 123 IRIESTLSRDELELATVTCWAIWWDRNKLVHGEAISPALIKSNWIKKYIESFKRANSIRD 182
             + + LS+ ELEL  V  W IW DRNK+ HGE+    +  +N+   Y+E++ +AN+ R 
Sbjct: 368 FHLATLLSQQELELVFVIMWVIWTDRNKINHGESRRDGMALANYATNYMENYHKANN-RP 427

Query: 183 SNRVSNRTPDSSQENPT---CWVPPSEDFWKLNVDAACIHLPPSTGLGTFCRNKDGDVMI 242
           +      TP      PT    W PP     KLNVDAA        G+G   RN  G+VM 
Sbjct: 428 TAVTEPVTPAQISTLPTEGIPWKPPDMYGLKLNVDAAVNPTSKVLGVGAIVRNYKGEVMA 487

Query: 243 ASSHFFDFYMDPLRVEVKAIWEGMKNALSLGRLKLKVESDSLMAIKFINKE---LVVWDD 302
           A S           +E KA++  +     L      VE+D+L    F+N E   L  + D
Sbjct: 488 AMSKLVQGCFRSDEMEAKALFHALNWISQLPLSVTLVETDALRVSNFLNHETWDLSCFSD 547

Query: 303 VEAEVAKIWDLIPCFSVIDFSYIPRNCSKAADVVAKAARSSGVNTTWMGQFPSWLCRVVQ 340
           +   +  +  L+  FS I  S++ R+ ++AA  +AK A    V+T WMG+ P  +  VV+
Sbjct: 548 I---IFDVRCLLSSFSRIVISHVKRSANQAAHGLAKHALGLDVDTCWMGEIPYPIFSVVK 596

BLAST of Lcy05g018060 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-09
Identity = 56/223 (25.11%), Postives = 88/223 (39.46%), Query Frame = 0

Query: 125 WAIWWDRNKLVHGEA----ISPALIKSNWIKKYIESFKRANSIRDSNRVSNRTPDSSQEN 184
           W IW   N LV         +   +  N  K++++     N++ +  +  NR  D S+  
Sbjct: 49  WRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLD-----NTMTNEQQNGNRNADPSRN- 108

Query: 185 PTCWVPPSEDFWKLNVDAACIHLPPSTGLGTFCRNKDGDVMIASSHFFDFYMDPLRVEVK 244
            T W PP  D  K N DA+       +GLG   RN  G V+      F   M     E  
Sbjct: 109 -TKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECS 168

Query: 245 AIWEGMKNALSLGRLKLKVESDSLMAIKFINKELVVWDDVEAEVAKIWDLIPCFSVIDFS 304
            +   ++ +   G  K+  E D+    + IN +      ++  +  I   IP F  I+FS
Sbjct: 169 TLIWAIQASYGFGHKKVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIPSFESIEFS 228

Query: 305 YIPRNCSKAADVVAKAARSSGVNTTWMGQFPSWLCRVVQMDFS 344
           +  R  +  AD +AK A       +     P +L   V  D+S
Sbjct: 229 FKHREQNGCADFLAKQAIKENTQWSLFHSCPYFLSPYVNNDYS 263

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DX303.0e-4728.63uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803QGR48.7e-3125.14Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6J1BQ495.6e-3036.36uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A803NW042.4e-2826.67Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PWX15.8e-2723.61Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022158377.16.2e-4728.63uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_022131661.11.2e-2936.36uncharacterized protein LOC111004786 [Momordica charantia][more]
XP_030487365.14.1e-2726.61uncharacterized protein LOC115704292 [Cannabis sativa][more]
XP_030505068.17.8e-2623.47uncharacterized protein LOC115720043 [Cannabis sativa][more]
XP_030498035.11.0e-2529.72uncharacterized protein LOC115713693 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
AT5G65005.12.4e-0925.11Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 195..317
e-value: 6.2E-21
score: 74.5
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 192..323
e-value: 4.0E-15
score: 58.0
NoneNo IPR availablePANTHERPTHR47723OS05G0353850 PROTEINcoord: 172..341
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 194..306
e-value: 2.11412E-13
score: 64.2576
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 191..322

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g018060.1Lcy05g018060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity