Lcy05g017990 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g017990
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribonuclease H-like domain containing protein
Location	Chr05: 33780833 .. 33781508 (+)
RNA-Seq Expression	Lcy05g017990
Synteny	Lcy05g017990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGTCAATTCTTTTCACAAGGATGAAAAGAGGTATTGATTAAAAGTATTATTCAGTCGATCCCCACCTATGCGATGGGGTGCTTCAGGATACCAAAAGGTATTTTAACAAAAATATCGTCTATATGTGCTAAATTCTGGTGGGGTTCCCATAGTGACAAGCGAAGCATGCATCGAAGGAGATGAGACAAGCTATGTAAACCAAAGGAGATTGGGGGATTAAATTTTCGAGATTTGGTTAATTTCAACCAGGCTATGCTTGCAAAACAAGCTTGGAGGGTGCTAACGAACCCGCACCTTACAATATCCAAAGTTTTATGTGGAAGGTATTTCCCTTTATCTTCAGTGTTAAATGTGTCGTATTCTTCTTCGTCTTCTTTCTTTTGGAAAGGATTTGTATGGGGAATGGAGCTGTTGAAACGTGGAATCAGCAAAAACTTGGGGAACGGTCAGTCCATCTATATGTTTCAAGACCCATGGATTCCTAGTCCCACTACTTTTAAAGTGATTTCGCATTTTGACCCAAGGATGGCGGATGTGAAAGTGAGGGATTTTATTACTCCAAATGTGCAGTGGGATGAGGCGAAGCTTCAACAATATTTGGTAGGGGAGGATGTGGAAATGATTAAACGCTTGCCTATCAGTACGACTGCCCCAGACAGATGGATTTGA

mRNA sequence

ATGGAAGGGTCAATTCTTTTCACAAGGATGAAAAGAGTGTTAAATGTGTCGTATTCTTCTTCGTCTTCTTTCTTTTGGAAAGGATTTGTATGGGGAATGGAGCTGTTGAAACGTGGAATCAGCAAAAACTTGGGGAACGGTCAGTCCATCTATATGTTTCAAGACCCATGGATTCCTAGTCCCACTACTTTTAAAGTGATTTCGCATTTTGACCCAAGGATGGCGGATGTGAAAGTGAGGGATTTTATTACTCCAAATGTGCAGTGGGATGAGGCGAAGCTTCAACAATATTTGGTAGGGGAGGATGTGGAAATGATTAAACGCTTGCCTATCAGTACGACTGCCCCAGACAGATGGATTTGA

Coding sequence (CDS)

ATGGAAGGGTCAATTCTTTTCACAAGGATGAAAAGAGTGTTAAATGTGTCGTATTCTTCTTCGTCTTCTTTCTTTTGGAAAGGATTTGTATGGGGAATGGAGCTGTTGAAACGTGGAATCAGCAAAAACTTGGGGAACGGTCAGTCCATCTATATGTTTCAAGACCCATGGATTCCTAGTCCCACTACTTTTAAAGTGATTTCGCATTTTGACCCAAGGATGGCGGATGTGAAAGTGAGGGATTTTATTACTCCAAATGTGCAGTGGGATGAGGCGAAGCTTCAACAATATTTGGTAGGGGAGGATGTGGAAATGATTAAACGCTTGCCTATCAGTACGACTGCCCCAGACAGATGGATTTGA

Protein sequence

MEGSILFTRMKRVLNVSYSSSSSFFWKGFVWGMELLKRGISKNLGNGQSIYMFQDPWIPSPTTFKVISHFDPRMADVKVRDFITPNVQWDEAKLQQYLVGEDVEMIKRLPISTTAPDRWI

Homology

[Close]

BLAST of Lcy05g017990 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.2e-17
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 13   VLNVSYSSSSSFFWKGFVWGMELLKRGISKNLGNGQSIYMFQDPWIPSPTTFKVISHFDP 72
            +L  S +S SS+FWKGF+WG +LL +G+   +GNG +I  F DPW+P PTTFK +  F+ 
Sbjct: 988  LLQASNNSKSSYFWKGFLWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFKPL-RFNN 1047

Query: 73   RMADVKVRDFITPNVQWDEAKLQQYLVGEDVEMIKRLPIST-TAPDRWI 121
               D  V  FIT +  WD   +      ED ++I  +PIS+    D W+
Sbjct: 1048 GALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPISSYNLQDSWL 1095

[Close]

BLAST of Lcy05g017990 vs. ExPASy TrEMBL
Match: A0A6J1BRN0 (uncharacterized protein LOC111004787 OS=Momordica charantia OX=3673 GN=LOC111004787 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.2e-17
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 13  VLNVSYSSSSSFFWKGFVWGMELLKRGISKNLGNGQSIYMFQDPWIPSPTTFK-VISHFD 72
           VL  ++  + S+FWKGF+WG +LL +G+   +GNG +I +F DPWIP P +F+ + + F 
Sbjct: 120 VLQATHLRNQSYFWKGFIWGRDLLIKGLRSRVGNGSTINIFSDPWIPRPYSFRPITAPFG 179

Query: 73  PRMADVKVRDFITPNVQWDEAKLQQYLVGEDVEMIKRLPIST-TAPDRWI 121
           P   DVKV D I PN QWD   +      ED ++I  +P+S   + D WI
Sbjct: 180 P--YDVKVADLINPNGQWDVHLISYIFCEEDRDLILSMPVSPYNSVDSWI 227

[Close]

BLAST of Lcy05g017990 vs. ExPASy TrEMBL
Match: A0A803Q6Z2 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.7e-14
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 14   LNVSYSSSSSFFWKGFVWGMELLKRGISKNLGNGQSIYMFQDPWIPSPTTFKVISHFDPR 73
            L  +  +  S  WK  VWG ELL +G+   +G+G  +     PWIP P+ FK +    P 
Sbjct: 1633 LEATAGAQPSLTWKSIVWGKELLLKGLRWRIGSGADVNCVSQPWIPGPSNFKPLLFLSPD 1692

Query: 74   MADVKVRDFITPNVQWDEAKLQQYLVGEDVEMIKRLPIS 113
              DVKV DFIT + QWD  KLQQ+    DV+ I  +P+S
Sbjct: 1693 -RDVKVADFITHSRQWDVPKLQQFFTPPDVDRILSIPLS 1730

[Close]

BLAST of Lcy05g017990 vs. ExPASy TrEMBL
Match: A0A803Q8J4 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.3e-13
Identity = 46/108 (42.59%), Postives = 59/108 (54.63%), Query Frame = 0


Query: 14   LNVSYSSSSSFFWKGFVWGMELLKRGISKNLGNGQSIYMFQDPWIPSPTTFKVISHFDPR 73
            L+ +   +SS  W+G  WG ELLK+GI K +GNG SI    DPWIP    F  I  F   
Sbjct: 1342 LSAATCGASSLTWQGICWGRELLKKGIRKKVGNGFSISCANDPWIPGNLIFTPI--FYSG 1401

Query: 74   MADVKVRDFITPNVQWDEAKLQQYLVGEDVEMIKRLPISTTA-PDRWI 121
              +  V D+ITP+ +W+ +KL       DV  I  LP+S  A PD WI
Sbjct: 1402 NPNSVVADYITPDREWNFSKLSADFSSVDVGRILSLPLSNNAGPDYWI 1447

[Close]

BLAST of Lcy05g017990 vs. ExPASy TrEMBL
Match: A0A6P5RF81 (uncharacterized protein LOC110745747 isoform X1 OS=Prunus avium OX=42229 GN=LOC110745747 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 21  SSSFFWKGFVWGMELLKRGISKNLGNGQSIYMFQDPWIPSPTTFKVISHFDPRMAD--VK 80
           +SS+ W+  +WG ELL  G+ K +G+GQ   ++ D WIPSP +F+ IS   P++ D   K
Sbjct: 24  ASSYIWRSLIWGRELLLSGLRKGIGDGQETLVYGDAWIPSPNSFRPIS---PQVLDQETK 83

Query: 81  VRDFITPNVQWDEAKLQQYLVGEDVEMIKRLPISTT-APDRWI 121
           V DFI P   W+   L      EDV+ I  +P+S     DRWI
Sbjct: 84  VSDFIFPVGNWNVDLLNLCFQEEDVKAITSIPLSVNFHKDRWI 123

[Close]

BLAST of Lcy05g017990 vs. NCBI nr
Match: XP_022131662.1 (uncharacterized protein LOC111004787 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 6.6e-17
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 0


Query: 13  VLNVSYSSSSSFFWKGFVWGMELLKRGISKNLGNGQSIYMFQDPWIPSPTTFK-VISHFD 72
           VL  ++  + S+FWKGF+WG +LL +G+   +GNG +I +F DPWIP P +F+ + + F 
Sbjct: 120 VLQATHLRNQSYFWKGFIWGRDLLIKGLRSRVGNGSTINIFSDPWIPRPYSFRPITAPFG 179

Query: 73  PRMADVKVRDFITPNVQWDEAKLQQYLVGEDVEMIKRLPIST-TAPDRWI 121
           P   DVKV D I PN QWD   +      ED ++I  +P+S   + D WI
Sbjct: 180 P--YDVKVADLINPNGQWDVHLISYIFCEEDRDLILSMPVSPYNSVDSWI 227

[Close]

BLAST of Lcy05g017990 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 6.6e-17
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 13   VLNVSYSSSSSFFWKGFVWGMELLKRGISKNLGNGQSIYMFQDPWIPSPTTFKVISHFDP 72
            +L  S +S SS+FWKGF+WG +LL +G+   +GNG +I  F DPW+P PTTFK +  F+ 
Sbjct: 988  LLQASNNSKSSYFWKGFLWGRDLLVKGLRLRVGNGSTIKAFSDPWLPRPTTFKPL-RFNN 1047

Query: 73   RMADVKVRDFITPNVQWDEAKLQQYLVGEDVEMIKRLPIST-TAPDRWI 121
               D  V  FIT +  WD   +      ED ++I  +PIS+    D W+
Sbjct: 1048 GALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPISSYNLQDSWL 1095

[Close]

BLAST of Lcy05g017990 vs. NCBI nr
Match: XP_030509050.1 (uncharacterized protein LOC115723712 [Cannabis sativa])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 0


Query: 14   LNVSYSSSSSFFWKGFVWGMELLKRGISKNLGNGQSIYMFQDPWIPSPTTFKVISHFDPR 73
            L  +  +  S  WK  VWG ELL +G+   +G+G  +     PWIP P+ FK +    P 
Sbjct: 909  LEATAGAQPSLTWKSIVWGKELLLKGLRWRIGSGADVNCVSQPWIPGPSNFKPLLFLSPD 968

Query: 74   MADVKVRDFITPNVQWDEAKLQQYLVGEDVEMIKRLPIS 113
              DVKV DFIT + QWD  KLQQ+    DV+ I  +P+S
Sbjct: 969  -RDVKVADFITHSRQWDVPKLQQFFTPPDVDRILSIPLS 1006

[Close]

BLAST of Lcy05g017990 vs. NCBI nr
Match: XP_021801569.1 (uncharacterized protein LOC110745747 isoform X1 [Prunus avium])

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-12
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 21  SSSFFWKGFVWGMELLKRGISKNLGNGQSIYMFQDPWIPSPTTFKVISHFDPRMAD--VK 80
           +SS+ W+  +WG ELL  G+ K +G+GQ   ++ D WIPSP +F+ IS   P++ D   K
Sbjct: 24  ASSYIWRSLIWGRELLLSGLRKGIGDGQETLVYGDAWIPSPNSFRPIS---PQVLDQETK 83

Query: 81  VRDFITPNVQWDEAKLQQYLVGEDVEMIKRLPISTT-APDRWI 121
           V DFI P   W+   L      EDV+ I  +P+S     DRWI
Sbjct: 84  VSDFIFPVGNWNVDLLNLCFQEEDVKAITSIPLSVNFHKDRWI 123

[Close]

BLAST of Lcy05g017990 vs. NCBI nr
Match: PKA49974.1 (Putative ribonuclease H protein [Apostasia shenzhenica])

HSP 1 Score: 82.0 bits (201), Expect = 3.8e-12
Identity = 38/119 (31.93%), Postives = 63/119 (52.94%), Query Frame = 0


Query: 10  MKRVLNVSY-----------SSSSSFFWKGFVWGMELLKRGISKNLGNGQSIYMFQDPWI 69
           M RVL   Y           S +SS+ W+  +WG +LLK G+   +GNG S+ +F DPW+
Sbjct: 305 MARVLKAKYFHNCDFLMAQASPNSSYIWRSILWGRDLLKLGLRWRIGNGNSVRVFGDPWL 364

Query: 70  PSPTTFKVISHFDPRMADVKVRDFITPNVQWDEAKLQQYLVGEDVEMIKRLPISTTAPD 118
           P P +F+ I+  +P +A  ++ + +T +  W+  K+   L   D  +I  +P  +T  D
Sbjct: 365 PRPISFQAITSPNPNLAATRIVELLTEDGSWNWEKINSILWSIDYHLILEMPPCSTKFD 423

The following BLAST results are available for this feature:

BLAST of Lcy05g017990 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g017990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	3.2e-17	41.28	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1BRN0	3.2e-17	41.82	uncharacterized protein LOC111004787 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A803Q6Z2	5.7e-14	41.41	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803Q8J4	6.3e-13	42.59	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6P5RF81	1.4e-12	40.78	uncharacterized protein LOC110745747 isoform X1 OS=Prunus avium OX=42229 GN=LOC1...	[more]

BLAST of Lcy05g017990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131662.1	6.6e-17	41.82	uncharacterized protein LOC111004787 [Momordica charantia]	[more]
XP_022158377.1	6.6e-17	41.28	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_030509050.1	1.2e-13	41.41	uncharacterized protein LOC115723712 [Cannabis sativa]	[more]
XP_021801569.1	2.9e-12	40.78	uncharacterized protein LOC110745747 isoform X1 [Prunus avium]	[more]
PKA49974.1	3.8e-12	31.93	Putative ribonuclease H protein [Apostasia shenzhenica]	[more]

BLAST of Lcy05g017990 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g017990.1	Lcy05g017990.1	mRNA