Lcy05g017980 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g017980
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase
Location	Chr05: 33775078 .. 33776272 (+)
RNA-Seq Expression	Lcy05g017980
Synteny	Lcy05g017980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTACGGTCGCCCCGAACTGCTGCTGTAACTTGCTGTCGTGACGTTGCCAGAAGAAAACTCACGAAGGAGACGCGCCGCAGACCAGATTTGAAGAACCGCCGCCACGACCATTGCTTCGCCAGAACGCCTTTGCTACTGCTGGTCGGAAAACACCACGATCGAACGCCCATAGCACGCCACGCTGTCGTCGGAGAAGACGTGCTGTCGTCGGAGAGGGGTTGATGGGTAGAAGAATCGAGAAAGGGAGGGCTGCTGGTCGGCTGTGGGGCGTGGAGAAGGAGGAAGAAAGATAGGGAAGATGAAATAATCTAGGGCTGCGTGCGTGGCTTAAAAAAAACCTAATGGGCTTGGGCTTGGCTCTAATTTCAGCATATTTACAAAAATGCCACTCCAGCCCTAATTTTAAATATTTCACCAATTTTCAAATTTTCAAACTCCCTCTTAACTCAAAATAACTCTCAAACTAAATAAAATTGAATTTTCCTAAAATTACGGGCGTTACAGCGACAATGCGGCGACGTCGAAATTGGGTAAATGGTGTTGAAGATGCAAATGGGAACTGGCAATCTGATTTACCTATATACAGAAGTCATTCAAGAATTATTTCAAGGAGATATTTACTTCAGCTCAGCCAGCTCAGGGTGATATGACTAGAGTTCTTAAACATATTCCCAGGAAAGTTACTGATGAGATGAACCAGATGTTAATGGCTCCATGTACCAGAGAGGAAATCATCTCTACCATCAGAAGCTTCCATCCGACTAAGGCCCCGGGATCTGATGGATTTTCAGCCTTATTCTATCAAAAGTATTGGGACGTAGTGGGGAACACAACGGTGTCTAATTGTCTGGAAATTTTGAACTCGGAGGGATCGGTGAAGGAATGGAACCATACAAATATAGTGCTCATACCGAAGGGTCGGCAGGCAAGGTTAGTATCTGATTATCGCCCTATTATTTTTTGCAATGTCTCTTATAAAATTATTACTAAGGTCATGGCGAATAGACTAAAGGGAGTGTTAAATGAGATAATCAATGAGTGTCAATCTGCTTTTATTCCTGGTAGATCGATATCTGATAACATGATTTTGGGACATGAAACACTTCATTTTCTTAAAAATAAGCGTAAAGGAAAGATTGGATATGCTGCGCTTAAACTTGATATGAGTAAGGCTTACGATAGGGTGGAATGA

mRNA sequence

ATGCTACGGTCGCCCCGAACTGCTGCTGTAACTTGCTGTCGTGACGTTGCCAGAAGAAAACTCACGAAGGAGACGCGCCGCAGACCAGATTTGAAGAACCGCCGCCACGACCATTGCTTCGCCAGAACGCCTTTGCTACTGCTGGTCGGAAAACACCACGATCGAACGCCCATAGCACGCCACGCTGTCGTCGGAGAAGACGTGCTGTCGTCGGAGAGGGCTCAGCCAGCTCAGGGTGATATGACTAGAGTTCTTAAACATATTCCCAGGAAAGTTACTGATGAGATGAACCAGATGTTAATGGCTCCATGTACCAGAGAGGAAATCATCTCTACCATCAGAAGCTTCCATCCGACTAAGGCCCCGGGATCTGATGGATTTTCAGCCTTATTCTATCAAAAGTATTGGGACGTAGTGGGGAACACAACGGTGTCTAATTGTCTGGAAATTTTGAACTCGGAGGGATCGGTGAAGGAATGGAACCATACAAATATAGTGCTCATACCGAAGGGTCGGCAGGCAAGATCGATATCTGATAACATGATTTTGGGACATGAAACACTTCATTTTCTTAAAAATAAGCGTAAAGGAAAGATTGGATATGCTGCGCTTAAACTTGATATGAGTAAGGCTTACGATAGGGTGGAATGA

Coding sequence (CDS)

ATGCTACGGTCGCCCCGAACTGCTGCTGTAACTTGCTGTCGTGACGTTGCCAGAAGAAAACTCACGAAGGAGACGCGCCGCAGACCAGATTTGAAGAACCGCCGCCACGACCATTGCTTCGCCAGAACGCCTTTGCTACTGCTGGTCGGAAAACACCACGATCGAACGCCCATAGCACGCCACGCTGTCGTCGGAGAAGACGTGCTGTCGTCGGAGAGGGCTCAGCCAGCTCAGGGTGATATGACTAGAGTTCTTAAACATATTCCCAGGAAAGTTACTGATGAGATGAACCAGATGTTAATGGCTCCATGTACCAGAGAGGAAATCATCTCTACCATCAGAAGCTTCCATCCGACTAAGGCCCCGGGATCTGATGGATTTTCAGCCTTATTCTATCAAAAGTATTGGGACGTAGTGGGGAACACAACGGTGTCTAATTGTCTGGAAATTTTGAACTCGGAGGGATCGGTGAAGGAATGGAACCATACAAATATAGTGCTCATACCGAAGGGTCGGCAGGCAAGATCGATATCTGATAACATGATTTTGGGACATGAAACACTTCATTTTCTTAAAAATAAGCGTAAAGGAAAGATTGGATATGCTGCGCTTAAACTTGATATGAGTAAGGCTTACGATAGGGTGGAATGA

Protein sequence

MLRSPRTAAVTCCRDVARRKLTKETRRRPDLKNRRHDHCFARTPLLLLVGKHHDRTPIARHAVVGEDVLSSERAQPAQGDMTRVLKHIPRKVTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDVVGNTTVSNCLEILNSEGSVKEWNHTNIVLIPKGRQARSISDNMILGHETLHFLKNKRKGKIGYAALKLDMSKAYDRVE

Homology

[Close]

BLAST of Lcy05g017980 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.4e-05
Identity = 42/170 (24.71%), Postives = 67/170 (39.41%), Query Frame = 0


Query: 92  VTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDVVG----------- 151
           V++   + L  P T +E+   +R     K+PG DG +  F+Q +WD +G           
Sbjct: 437 VSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAF 496

Query: 152 --NTTVSNC----LEILNSEGS---VKEWN-----HTNIVLIPKGRQ------------- 211
                  +C    L +L  +G    +K W       T+  ++ K                
Sbjct: 497 KKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHP 556

Query: 212 -------ARSISDNMILGHETLHFLKNKRKGKIGYAALKLDMSKAYDRVE 217
                   R+I DN+ L  + LHF    R+  +  A L LD  KA+DRV+
Sbjct: 557 DQSYTVPGRTIFDNVFLIRDLLHF---ARRTGLSLAFLSLDQEKAFDRVD 603

[Close]

BLAST of Lcy05g017980 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.9e-04
Identity = 30/85 (35.29%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 87  HIPRKVTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDVVGNTTVSN 146
           H+PR    E+ +ML  P +  EI STI++    K+PG DGF++ FYQ + + +    + N
Sbjct: 436 HLPRLSQKEV-EMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEEL-VPILLN 495

Query: 147 CLEILNSEGSV-KEWNHTNIVLIPK 171
             + +  EG +   +   NI LIPK
Sbjct: 496 LFQNIEKEGILPNTFYEANITLIPK 518

[Close]

BLAST of Lcy05g017980 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 76/182 (41.76%), Postives = 97/182 (53.30%), Query Frame = 0


Query: 80  DMTRVLKHIPRKVTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDVV 139
           D+  ++  IP ++T E+N+ L+AP T+EEI   IR   PTKA G DGF ALFYQ YW VV
Sbjct: 566 DIEAIINLIPTRITSEVNEQLLAPYTKEEIELAIRQMFPTKALGPDGFPALFYQTYWHVV 625

Query: 140 GNTTVSNCLEILNSEGSVKEWNHTNIVLIPKGRQARS----------------------- 199
           G  T+  CL  LN+   +K+WN T I LIPK +Q RS                       
Sbjct: 626 GPKTLEACLNALNNGDDIKKWNSTYIALIPKIKQPRSISDFRPISLCNVSYKIISKSITN 685

Query: 200 ----------------------ISDNMILGHETLHFLKNKRKGKIGYAALKLDMSKAYDR 217
                                 ISDN+I+GHE LH + + + G IG AALKLD+SKA+DR
Sbjct: 686 RLKNVIGLVISDAQSAFVPSRAISDNVIIGHECLHTINSCKSGLIGMAALKLDLSKAFDR 745

[Close]

BLAST of Lcy05g017980 vs. ExPASy TrEMBL
Match: A0A5B6W497 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_010672 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 74/183 (40.44%), Postives = 96/183 (52.46%), Query Frame = 0


Query: 79  GDMTRVLKHIPRKVTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDV 138
           GD+T +L  I   ++D MNQ L+AP T +EI+  ++   PTKA   DGF A+FY+K+W +
Sbjct: 454 GDVTHILSGIKSCISDSMNQSLIAPYTEDEIVEALKGTGPTKASDFDGFPAIFYKKFWHI 513

Query: 139 VGNTTVSNCLEILNSEGSVKEWNHTNIVLIPKGRQ------------------------- 198
           VG  T   C+E+LN   S+KE N T +VLIPK                            
Sbjct: 514 VGKDTCDCCMEMLNRGRSLKEINKTVLVLIPKTSNPINLKNFHPISLCTVIYKLIAKVVA 573

Query: 199 --------------------ARSISDNMILGHETLHFLKNKRKGKIGYAALKLDMSKAYD 217
                                R I+DN++L +E LH LKNKR G+ GY ALKLDMSKAYD
Sbjct: 574 NRLQKLLNDCIDDSQSAFVPGRLITDNVLLAYEVLHSLKNKRSGRKGYMALKLDMSKAYD 633

[Close]

BLAST of Lcy05g017980 vs. ExPASy TrEMBL
Match: A0A5B6W1F9 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_025367 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.7e-27
Identity = 66/141 (46.81%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 80  DMTRVLKHIPRKVTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDVV 139
           D   +L+ I   ++ E+N+ L AP   +E+   ++   PTKAPG DGF A+F+QKYW +V
Sbjct: 236 DPREILEGIEGSISVEINESLQAPFREDEVRMALKGMGPTKAPGPDGFPAIFFQKYWHIV 295

Query: 140 GNTTVSNCLEILNSEGSVKEWNHTNIVLIPKGRQ----ARSISDNMILGHETLHFLKNKR 199
           G   +  CL +LN        N TNIVLIPK +      R ISDN++L +E LH  + KR
Sbjct: 296 GKEVLRFCLGVLNEGKEAGSANMTNIVLIPKVQSVFVPGRLISDNILLAYEILHTFRQKR 355

Query: 200 KGKIGYAALKLDMSKAYDRVE 217
            GK GY A+KLDMSKAYD+VE
Sbjct: 356 TGKKGYMAVKLDMSKAYDKVE 376

[Close]

BLAST of Lcy05g017980 vs. ExPASy TrEMBL
Match: A0A2I4HUH1 (uncharacterized protein LOC109021580 OS=Juglans regia OX=51240 GN=LOC109021580 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.1e-27
Identity = 66/141 (46.81%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 84  VLKHIPRKVTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDVVGNTT 143
           VL+ +  ++T E++  L      EE+   +   HP KAPG DG S LFYQKYW V+GN  
Sbjct: 374 VLEGLEGRLTPELSLDLEREFVAEEVTLVVNQMHPNKAPGPDGMSPLFYQKYWHVLGNDI 433

Query: 144 VSNCLEILNSEGSVKEWNHTNIVLIPKGRQA--------RSISDNMILGHETLHFLKNKR 203
           ++  L +LN+    + +NHT +VLIPK + A        R I+DN+++ +E +HFLK KR
Sbjct: 434 IAAVLNVLNTGVFPEGFNHTLLVLIPKKKTATQLAFVPGRLITDNVLVAYELVHFLKQKR 493

Query: 204 KGKIGYAALKLDMSKAYDRVE 217
           KGK G+ +LKLDMSKAYDRVE
Sbjct: 494 KGKKGFMSLKLDMSKAYDRVE 514

[Close]

BLAST of Lcy05g017980 vs. ExPASy TrEMBL
Match: Q8S6P1 (Putative reverse transcriptase OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0073L01.7 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.3e-26
Identity = 75/182 (41.21%), Postives = 99/182 (54.40%), Query Frame = 0


Query: 55  RTPIARHAVVGEDVLSSERAQPAQGDMTRVLKHIPRKVTDEMNQMLMAPCTREEIISTIR 114
           R PI+R  VV E+VL   R +  + +   +L  + RKV+  MN+ L A  TREE+   + 
Sbjct: 608 RQPISRDQVVREEVL---RYRLEKLEQQNLLDVVDRKVSGAMNESLRAEFTREEVKEALD 667

Query: 115 SFHPTKAPGSDGFSALFYQKYWDVVGNTTVSNCLEILNSEGSVKEWNHTNIVLIPKGR-- 174
           +    KAPG DG  A FY+  WDVVG       LE+L      + WN T IVLIPK    
Sbjct: 668 AIGDLKAPGPDGMPAGFYKACWDVVGEKVTVEVLEVLRGGAIPEGWNDTTIVLIPKVLAN 727

Query: 175 ------------------QARSISDNMILGHETLHFLKNKRKGKIGYAALKLDMSKAYDR 217
                               R ISDN+++ +E  H+++NKR G++GYAA KLDMSKAYDR
Sbjct: 728 RLKKILPDVISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDR 786

[Close]

BLAST of Lcy05g017980 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-28
Identity = 76/182 (41.76%), Postives = 97/182 (53.30%), Query Frame = 0


Query: 80  DMTRVLKHIPRKVTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDVV 139
           D+  ++  IP ++T E+N+ L+AP T+EEI   IR   PTKA G DGF ALFYQ YW VV
Sbjct: 566 DIEAIINLIPTRITSEVNEQLLAPYTKEEIELAIRQMFPTKALGPDGFPALFYQTYWHVV 625

Query: 140 GNTTVSNCLEILNSEGSVKEWNHTNIVLIPKGRQARS----------------------- 199
           G  T+  CL  LN+   +K+WN T I LIPK +Q RS                       
Sbjct: 626 GPKTLEACLNALNNGDDIKKWNSTYIALIPKIKQPRSISDFRPISLCNVSYKIISKSITN 685

Query: 200 ----------------------ISDNMILGHETLHFLKNKRKGKIGYAALKLDMSKAYDR 217
                                 ISDN+I+GHE LH + + + G IG AALKLD+SKA+DR
Sbjct: 686 RLKNVIGLVISDAQSAFVPSRAISDNVIIGHECLHTINSCKSGLIGMAALKLDLSKAFDR 745

[Close]

BLAST of Lcy05g017980 vs. NCBI nr
Match: XP_023881891.1 (uncharacterized protein LOC111994244 [Quercus suber])

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-27
Identity = 73/181 (40.33%), Postives = 100/181 (55.25%), Query Frame = 0


Query: 81  MTRVLKHIPRKVTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDVVG 140
           ++ VL  IP  VT+EMN  L+   TREEI + +   HPTKAPG DG SA+F+QKYW++VG
Sbjct: 245 ISEVLDAIPTTVTEEMNHSLIQEFTREEIETALNQMHPTKAPGPDGMSAIFFQKYWNIVG 304

Query: 141 NTTVSNCLEILNSEGSVKEWNHTNIVLIPKGR---------------------------- 200
           N  V   L++LNS  S+ E N TNI L+PK +                            
Sbjct: 305 NDIVCMVLDVLNSNMSMVEINKTNITLVPKIKNPTKMSDFRPISLCNVVYKLISKVLANR 364

Query: 201 -----------------QARSISDNMILGHETLHFLKNKRKGKIGYAALKLDMSKAYDRV 217
                              R I+DN+++  E +H+L++K++GK G+AA+KLDMSKAYDRV
Sbjct: 365 LKNILPQIISENQSAFLSGRLITDNVLVAFELMHYLEHKKEGKEGFAAIKLDMSKAYDRV 424

[Close]

BLAST of Lcy05g017980 vs. NCBI nr
Match: KAA3476719.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-27
Identity = 74/183 (40.44%), Postives = 96/183 (52.46%), Query Frame = 0


Query: 79  GDMTRVLKHIPRKVTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDV 138
           GD+T +L  I   ++D MNQ L+AP T +EI+  ++   PTKA   DGF A+FY+K+W +
Sbjct: 454 GDVTHILSGIKSCISDSMNQSLIAPYTEDEIVEALKGTGPTKASDFDGFPAIFYKKFWHI 513

Query: 139 VGNTTVSNCLEILNSEGSVKEWNHTNIVLIPKGRQ------------------------- 198
           VG  T   C+E+LN   S+KE N T +VLIPK                            
Sbjct: 514 VGKDTCDCCMEMLNRGRSLKEINKTVLVLIPKTSNPINLKNFHPISLCTVIYKLIAKVVA 573

Query: 199 --------------------ARSISDNMILGHETLHFLKNKRKGKIGYAALKLDMSKAYD 217
                                R I+DN++L +E LH LKNKR G+ GY ALKLDMSKAYD
Sbjct: 574 NRLQKLLNDCIDDSQSAFVPGRLITDNVLLAYEVLHSLKNKRSGRKGYMALKLDMSKAYD 633

[Close]

BLAST of Lcy05g017980 vs. NCBI nr
Match: KAA3475146.1 (reverse transcriptase [Gossypium australe])

HSP 1 Score: 131.3 bits (329), Expect = 9.8e-27
Identity = 66/141 (46.81%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 80  DMTRVLKHIPRKVTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDVV 139
           D   +L+ I   ++ E+N+ L AP   +E+   ++   PTKAPG DGF A+F+QKYW +V
Sbjct: 236 DPREILEGIEGSISVEINESLQAPFREDEVRMALKGMGPTKAPGPDGFPAIFFQKYWHIV 295

Query: 140 GNTTVSNCLEILNSEGSVKEWNHTNIVLIPKGRQ----ARSISDNMILGHETLHFLKNKR 199
           G   +  CL +LN        N TNIVLIPK +      R ISDN++L +E LH  + KR
Sbjct: 296 GKEVLRFCLGVLNEGKEAGSANMTNIVLIPKVQSVFVPGRLISDNILLAYEILHTFRQKR 355

Query: 200 KGKIGYAALKLDMSKAYDRVE 217
            GK GY A+KLDMSKAYD+VE
Sbjct: 356 TGKKGYMAVKLDMSKAYDKVE 376

[Close]

BLAST of Lcy05g017980 vs. NCBI nr
Match: XP_018859783.1 (uncharacterized protein LOC109021580 [Juglans regia] >KAF5468190.1 hypothetical protein F2P56_012365 [Juglans regia])

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-26
Identity = 66/141 (46.81%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 84  VLKHIPRKVTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDVVGNTT 143
           VL+ +  ++T E++  L      EE+   +   HP KAPG DG S LFYQKYW V+GN  
Sbjct: 374 VLEGLEGRLTPELSLDLEREFVAEEVTLVVNQMHPNKAPGPDGMSPLFYQKYWHVLGNDI 433

Query: 144 VSNCLEILNSEGSVKEWNHTNIVLIPKGRQA--------RSISDNMILGHETLHFLKNKR 203
           ++  L +LN+    + +NHT +VLIPK + A        R I+DN+++ +E +HFLK KR
Sbjct: 434 IAAVLNVLNTGVFPEGFNHTLLVLIPKKKTATQLAFVPGRLITDNVLVAYELVHFLKQKR 493

Query: 204 KGKIGYAALKLDMSKAYDRVE 217
           KGK G+ +LKLDMSKAYDRVE
Sbjct: 494 KGKKGFMSLKLDMSKAYDRVE 514

[Close]

BLAST of Lcy05g017980 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-06
Identity = 30/92 (32.61%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 80  DMTRVLKHI-PRKVTDEMNQMLMAPCTREEIISTIRSFHPTKAPGSDGFSALFYQKYWDV 139
           D  + +K I P +  D +   L A  + +EI + + +    KAPG D F+A F+ + W V
Sbjct: 506 DSVQRIKDIHPFRCNDTLASRLSALPSDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFV 565

Query: 140 VGNTTVSNCLEILNSEGSVKEWNHTNIVLIPK 171
           V ++T++   E   +   +K +N T I LIPK
Sbjct: 566 VKDSTIAAVKEFFRTGHLLKRFNATAITLIPK 597

The following BLAST results are available for this feature:

BLAST of Lcy05g017980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P14381	6.4e-05	24.71	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV...	[more]
P08548	1.9e-04	35.29	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1	[more]

BLAST of Lcy05g017980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	1.1e-28	41.76	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5B6W497	2.1e-27	40.44	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_010672 PE=4 SV=1	[more]
A0A5B6W1F9	4.7e-27	46.81	Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_025367 PE=4 SV=1	[more]
A0A2I4HUH1	8.1e-27	46.81	uncharacterized protein LOC109021580 OS=Juglans regia OX=51240 GN=LOC109021580 P...	[more]
Q8S6P1	2.3e-26	41.21	Putative reverse transcriptase OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNB...	[more]

BLAST of Lcy05g017980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158377.1	2.3e-28	41.76	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_023881891.1	1.2e-27	40.33	uncharacterized protein LOC111994244 [Quercus suber]	[more]
KAA3476719.1	4.4e-27	40.44	reverse transcriptase [Gossypium australe]	[more]
KAA3475146.1	9.8e-27	46.81	reverse transcriptase [Gossypium australe]	[more]
XP_018859783.1	1.7e-26	46.81	uncharacterized protein LOC109021580 [Juglans regia] >KAF5468190.1 hypothetical ...	[more]

BLAST of Lcy05g017980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	2.7e-06	32.61	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19446:SF440	SUBFAMILY NOT NAMED	coord: 175..216 coord: 78..174
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 78..174
None	No IPR available	PANTHER	PTHR19446	REVERSE TRANSCRIPTASES	coord: 175..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g017980.1	Lcy05g017980.1	mRNA