Lcy05g017680 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g017680
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Glucose-6-phosphate 1-epimerase
Location	Chr05: 31431604 .. 31433364 (+)
RNA-Seq Expression	Lcy05g017680
Synteny	Lcy05g017680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACCATTCGGTTTCTCATTTGCCTATCACGCACTTGGTGGTTTCAGATATAAGCAAGGTGAGAATCGAAGGTCTGGAAACGCTCGACTTCTTGGACAATCTTTGTCAAAAGGAGTGCTTTACAGAACAAGGAGATGCCATAACCGTTGAATCTGAGGTGGATCGAGTATATGTGAGTACCCCGAACGTAATTGCTATACTTGATCACGAAGGGAAGCGGACTTATGTGATAAAAAAATTAATGGGTTAAAAGAGTCCACCTACCGTATTTTCTATTTGAGTCATAACCATCTGGGTTCACTTCCATTTGTGAATCTTGCTCTTTATTCTCCATTGGGCTGATATTACCTTGATTTTCGGTGCAATTTATGGCTCCACAATTTTCCTTTTTTAACTGATCCACATTAATTCCACGATTGTCATCGGTTTTATTTCCTTCTAGAGTTTCCTTTTTTGGAAATATAGCAATTGGGTATAATAATACTTCAAAATAATAATGACAATGACATGGTGACAGAGAGTCTACAATGTTAATTATAACAATTTATAAAAATCTAAACCAAAAATTCGAAGAGCTTAACATTACCACCGGAATTCAATGACGACTAAACTTTGAATTTTAGTCTAAAAAACGAAATTGGGGATCTTCAATTGATGAGCAAGAGGTTCCACTTCAGCCAAGATATTGCTCGTCTCAAATATATCTTCGTCTTCTTTGTTGATCACCTTTATGATTGTTGTTGTATCTGACTCGACAATGATAGATACATTGGCACACTGAGGTCCCTTCGAACGTTGGAGTAAGCTTTTAACCCTTCTAAAATAGCCAGGACTTGTATTTATCTCACATCAGACCAAGATAGTTTGAATGAAAGTGATCCTTTCTAGACTTTTTTTTTTTTTTTTTTCACTAGTTTTTTTAATTTTTTGAGAAGTTTTTTCGTTCACTAGTTGATAAAAAAACTATCATCAAAATTGTAGTAGGACCAAACATCGATTTTGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAATACATAATTGCTCACCAATAATTTAGAATTTTCTAAATTGTAGTAGGACTAAACCTACCACCCATAATGACATCATTGCTGAAATCATATAGTTTGATTGATCGAATTAAAATTAATTGTATATAACTTTTGCTCAAAATAGTAATTTATAAATTAAAAAAGTATCTGCTGTTCTCGTCATTATATTCCTAAAATGTATCTTCTCTATATAAATAAAAATCTGAGCTGGAGATATTTATTTAGTTGATATCTTCGTCATCCCTCCACCACTGTTTTTTTTTTCTTTTTTTTAGAACTACCAGTTTTATTAAAACACAAACTTTCGTCATAAAATTTCAATTTCATCCAATTCTGGAGAATAAACATAAATATGTGTGGAAATTTTTAGTATATTCAGTCACTAATTTTAATTTTTTTAAAAATGAAAGTGAGGGCGGCAGAAAAACACACAGAAAAACGTGTTGGGAGAAAACGCGGAATACAAATAACAATAATATTATGACGACAATCAATAATATTATAACTATCTCCCCTTCCACAGGTTAAGCCAACACAAGCCAAAAATAATAGTCACGAAAATAATAAAAGAGATAGGGAAAAAGAAACGACACCGAAAAATATACTGGTTCGCCTCAAGCTTGGGACTACGTCCAGTCTTCTGCAACTGCAGGTTCTACTAGAATTTGGAAGATTACAGGAAGCCTTCAATAACGCTACAAGCTAA

mRNA sequence

ATGGAAAACCATTCGGTTTCTCATTTGCCTATCACGCACTTGGTGGTTTCAGATATAAGCAAGGTGAGAATCGAAGGTCTGGAAACGCTCGACTTCTTGGACAATCTTTGTCAAAAGGAGTGCTTTACAGAACAAGGAGATGCCATAACCGTTGAATCTGAGGTGGATCGAGTATATGTTCTACTAGAATTTGGAAGATTACAGGAAGCCTTCAATAACGCTACAAGCTAA

Coding sequence (CDS)

ATGGAAAACCATTCGGTTTCTCATTTGCCTATCACGCACTTGGTGGTTTCAGATATAAGCAAGGTGAGAATCGAAGGTCTGGAAACGCTCGACTTCTTGGACAATCTTTGTCAAAAGGAGTGCTTTACAGAACAAGGAGATGCCATAACCGTTGAATCTGAGGTGGATCGAGTATATGTTCTACTAGAATTTGGAAGATTACAGGAAGCCTTCAATAACGCTACAAGCTAA

Protein sequence

MENHSVSHLPITHLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYVLLEFGRLQEAFNNATS

Homology

[Close]

BLAST of Lcy05g017680 vs. ExPASy Swiss-Prot
Match: Q40784 (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12
Identity = 35/49 (71.43%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 12  THLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           T+  VSDIS+VR+EGLET+D+LDNL  KE FTEQGDAI  ESEVD+VY+
Sbjct: 184 TYFFVSDISEVRVEGLETMDYLDNLKAKERFTEQGDAIVFESEVDKVYL 232

[Close]

BLAST of Lcy05g017680 vs. ExPASy TrEMBL
Match: A0A6J1D2K8 (Glucose-6-phosphate 1-epimerase OS=Momordica charantia OX=3673 GN=LOC111016413 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.0e-16
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 5   SVSHLPITHLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           S S +  THLVVSDIS+VRIEGLETLDFLDNLCQKE FTEQGDAIT ESEVDRVYV
Sbjct: 166 SFSFVYHTHLVVSDISEVRIEGLETLDFLDNLCQKERFTEQGDAITFESEVDRVYV 221

[Close]

BLAST of Lcy05g017680 vs. ExPASy TrEMBL
Match: A0A6J1J0B0 (Glucose-6-phosphate 1-epimerase OS=Cucurbita maxima OX=3661 GN=LOC111480078 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.5e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 12  THLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           THLVVSDIS+VRIEGLETLDFLDNLCQKE FTEQGDAIT ESEVDRVYV
Sbjct: 173 THLVVSDISEVRIEGLETLDFLDNLCQKERFTEQGDAITFESEVDRVYV 221

[Close]

BLAST of Lcy05g017680 vs. ExPASy TrEMBL
Match: A0A6J1EBY4 (Glucose-6-phosphate 1-epimerase OS=Cucurbita moschata OX=3662 GN=LOC111431798 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.5e-16
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 12  THLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           THLVVSDIS+VRIEGLETLDFLDNLCQKE FTEQGDAIT ESEVDRVYV
Sbjct: 173 THLVVSDISEVRIEGLETLDFLDNLCQKERFTEQGDAITFESEVDRVYV 221

[Close]

BLAST of Lcy05g017680 vs. ExPASy TrEMBL
Match: A0A1S3AVT1 (Glucose-6-phosphate 1-epimerase OS=Cucumis melo OX=3656 GN=LOC103483218 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 12  THLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           THLVVSDIS+VRIEGLET+DFLDNLCQKE FTEQGDAIT ESEVDRVYV
Sbjct: 173 THLVVSDISEVRIEGLETVDFLDNLCQKERFTEQGDAITFESEVDRVYV 221

[Close]

BLAST of Lcy05g017680 vs. ExPASy TrEMBL
Match: A0A5D3D3L8 (Glucose-6-phosphate 1-epimerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005210 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 12  THLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           THLVVSDIS+VRIEGLET+DFLDNLCQKE FTEQGDAIT ESEVDRVYV
Sbjct: 173 THLVVSDISEVRIEGLETVDFLDNLCQKERFTEQGDAITFESEVDRVYV 221

[Close]

BLAST of Lcy05g017680 vs. NCBI nr
Match: XP_022147505.1 (putative glucose-6-phosphate 1-epimerase [Momordica charantia] >XP_022147506.1 putative glucose-6-phosphate 1-epimerase [Momordica charantia] >XP_022147507.1 putative glucose-6-phosphate 1-epimerase [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 5   SVSHLPITHLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           S S +  THLVVSDIS+VRIEGLETLDFLDNLCQKE FTEQGDAIT ESEVDRVYV
Sbjct: 166 SFSFVYHTHLVVSDISEVRIEGLETLDFLDNLCQKERFTEQGDAITFESEVDRVYV 221

[Close]

BLAST of Lcy05g017680 vs. NCBI nr
Match: XP_022924272.1 (putative glucose-6-phosphate 1-epimerase [Cucurbita moschata] >XP_022924273.1 putative glucose-6-phosphate 1-epimerase [Cucurbita moschata] >KAG6582650.1 hypothetical protein SDJN03_22652, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019047.1 hypothetical protein SDJN02_20924 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 12  THLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           THLVVSDIS+VRIEGLETLDFLDNLCQKE FTEQGDAIT ESEVDRVYV
Sbjct: 173 THLVVSDISEVRIEGLETLDFLDNLCQKERFTEQGDAITFESEVDRVYV 221

[Close]

BLAST of Lcy05g017680 vs. NCBI nr
Match: XP_038878556.1 (putative glucose-6-phosphate 1-epimerase [Benincasa hispida] >XP_038878563.1 putative glucose-6-phosphate 1-epimerase [Benincasa hispida] >XP_038878570.1 putative glucose-6-phosphate 1-epimerase [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 12  THLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           THLVVSDIS+VRIEGLETLDFLDNLCQKE FTEQGDAIT ESEVDRVYV
Sbjct: 173 THLVVSDISEVRIEGLETLDFLDNLCQKERFTEQGDAITFESEVDRVYV 221

[Close]

BLAST of Lcy05g017680 vs. NCBI nr
Match: XP_022980793.1 (putative glucose-6-phosphate 1-epimerase [Cucurbita maxima] >XP_022980794.1 putative glucose-6-phosphate 1-epimerase [Cucurbita maxima])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 12  THLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           THLVVSDIS+VRIEGLETLDFLDNLCQKE FTEQGDAIT ESEVDRVYV
Sbjct: 173 THLVVSDISEVRIEGLETLDFLDNLCQKERFTEQGDAITFESEVDRVYV 221

[Close]

BLAST of Lcy05g017680 vs. NCBI nr
Match: XP_023526801.1 (putative glucose-6-phosphate 1-epimerase [Cucurbita pepo subsp. pepo] >XP_023526802.1 putative glucose-6-phosphate 1-epimerase [Cucurbita pepo subsp. pepo] >XP_023526803.1 putative glucose-6-phosphate 1-epimerase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 12  THLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           THLVVSDIS+VRIEGLETLDFLDNLCQKE FTEQGDAIT ESEVDRVYV
Sbjct: 173 THLVVSDISEVRIEGLETLDFLDNLCQKERFTEQGDAITFESEVDRVYV 221

[Close]

BLAST of Lcy05g017680 vs. TAIR 10
Match: AT3G61610.1 (Galactose mutarotase-like superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-14
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 12  THLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           T+L VSDIS+VRIEGLETLD+LDNL Q++  TEQGDAIT ESE+DR Y+
Sbjct: 173 TYLSVSDISEVRIEGLETLDYLDNLSQRQLLTEQGDAITFESEMDRTYL 221

[Close]

BLAST of Lcy05g017680 vs. TAIR 10
Match: AT5G57330.1 (Galactose mutarotase-like superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 3.6e-14
Identity = 35/49 (71.43%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 12  THLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           T+  VSDIS+VR+EGLETLD+LDNL  +E FTEQGDAIT ESEVD++Y+
Sbjct: 168 TYFSVSDISEVRVEGLETLDYLDNLKDRERFTEQGDAITFESEVDKIYL 216

[Close]

BLAST of Lcy05g017680 vs. TAIR 10
Match: AT4G23730.1 (Galactose mutarotase-like superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 7.9e-14
Identity = 33/49 (67.35%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 12  THLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           T+  +SDIS+VR+EGLETLD+LDN+  +E FTEQGDA+T ESE+DRVY+
Sbjct: 175 TYFSISDISEVRLEGLETLDYLDNMHDRERFTEQGDALTFESEIDRVYL 223

[Close]

BLAST of Lcy05g017680 vs. TAIR 10
Match: AT3G01590.2 (Galactose mutarotase-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-13
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 13  HLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           +L VSDIS+VR+EGLETLD+LDNL  KE FTEQ DAIT + EVDRVY+
Sbjct: 160 YLYVSDISEVRVEGLETLDYLDNLIGKERFTEQADAITFDGEVDRVYL 207

[Close]

BLAST of Lcy05g017680 vs. TAIR 10
Match: AT3G01590.1 (Galactose mutarotase-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-13
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 13  HLVVSDISKVRIEGLETLDFLDNLCQKECFTEQGDAITVESEVDRVYV 61
           +L VSDIS+VR+EGLETLD+LDNL  KE FTEQ DAIT + EVDRVY+
Sbjct: 160 YLYVSDISEVRVEGLETLDYLDNLIGKERFTEQADAITFDGEVDRVYL 207

The following BLAST results are available for this feature:

BLAST of Lcy05g017680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40784	1.1e-12	71.43	Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris OX=35872 PE=2 SV=1	[more]

BLAST of Lcy05g017680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D2K8	5.0e-16	85.71	Glucose-6-phosphate 1-epimerase OS=Momordica charantia OX=3673 GN=LOC111016413 P...	[more]
A0A6J1J0B0	6.5e-16	93.88	Glucose-6-phosphate 1-epimerase OS=Cucurbita maxima OX=3661 GN=LOC111480078 PE=3...	[more]
A0A6J1EBY4	6.5e-16	93.88	Glucose-6-phosphate 1-epimerase OS=Cucurbita moschata OX=3662 GN=LOC111431798 PE...	[more]
A0A1S3AVT1	1.5e-15	91.84	Glucose-6-phosphate 1-epimerase OS=Cucumis melo OX=3656 GN=LOC103483218 PE=3 SV=...	[more]
A0A5D3D3L8	1.5e-15	91.84	Glucose-6-phosphate 1-epimerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Lcy05g017680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147505.1	1.0e-15	85.71	putative glucose-6-phosphate 1-epimerase [Momordica charantia] >XP_022147506.1 p...	[more]
XP_022924272.1	1.4e-15	93.88	putative glucose-6-phosphate 1-epimerase [Cucurbita moschata] >XP_022924273.1 pu...	[more]
XP_038878556.1	1.4e-15	93.88	putative glucose-6-phosphate 1-epimerase [Benincasa hispida] >XP_038878563.1 put...	[more]
XP_022980793.1	1.4e-15	93.88	putative glucose-6-phosphate 1-epimerase [Cucurbita maxima] >XP_022980794.1 puta...	[more]
XP_023526801.1	1.4e-15	93.88	putative glucose-6-phosphate 1-epimerase [Cucurbita pepo subsp. pepo] >XP_023526...	[more]

BLAST of Lcy05g017680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61610.1	2.1e-14	73.47	Galactose mutarotase-like superfamily protein	[more]
AT5G57330.1	3.6e-14	71.43	Galactose mutarotase-like superfamily protein	[more]
AT4G23730.1	7.9e-14	67.35	Galactose mutarotase-like superfamily protein	[more]
AT3G01590.2	1.8e-13	72.92	Galactose mutarotase-like superfamily protein	[more]
AT3G01590.1	1.8e-13	72.92	Galactose mutarotase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014718	Glycoside hydrolase-type carbohydrate-binding	GENE3D	2.70.98.10		coord: 4..69 e-value: 3.7E-10 score: 41.3
None	No IPR available	PANTHER	PTHR11122:SF10	GLUCOSE-6-PHOSPHATE 1-EPIMERASE	coord: 12..60
None	No IPR available	PANTHER	PTHR11122	APOSPORY-ASSOCIATED PROTEIN C-RELATED	coord: 12..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g017680.1	Lcy05g017680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0047938	glucose-6-phosphate 1-epimerase activity