Lcy05g017410 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g017410
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr05: 29953370 .. 29953714 (-)
RNA-Seq ExpressionLcy05g017410
SyntenyLcy05g017410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCCTGAAATGCTTAAGGGATCTGGGATTTCAAACATTGAACTTTTTAACCAAGCACCCCTTGCAAAACAATATTGGCACTTCTTACAAGATCCTTCATCTTTGTTGTTTGTTGTGTTTAGGGGTCGATACTTTCCCAATTCGAATTTTCTTGAGGCTGGGGTGGGTCACTGTCCATCCTTGATCTGGTCCAATTTGGTGTGGGGAGGTGAATTGCTCAAGTGTGGCCTTCGGTGGAAAATAGGTGATGGAAGATTTGAATCTATTTACAACTCTAATTGGCTTCCTAATGGCTCTTTGTTGAGGGTTCAGTCGATGCCTTCAATTTCTGCCTCGAGCTAG

mRNA sequence

ATGTTTCCTGAAATGCTTAAGGGATCTGGGATTTCAAACATTGAACTTTTTAACCAAGCACCCCTTGCAAAACAATATTGGCACTTCTTACAAGATCCTTCATCTTTGTTGTTTGTTGTGTTTAGGGGTCGATACTTTCCCAATTCGAATTTTCTTGAGGCTGGGGTGGGTCACTGTCCATCCTTGATCTGGTCCAATTTGGTGTGGGGAGGTGAATTGCTCAAGTGTGGCCTTCGGTGGAAAATAGGTGATGGAAGATTTGAATCTATTTACAACTCTAATTGGCTTCCTAATGGCTCTTTGTTGAGGGTTCAGTCGATGCCTTCAATTTCTGCCTCGAGCTAG

Coding sequence (CDS)

ATGTTTCCTGAAATGCTTAAGGGATCTGGGATTTCAAACATTGAACTTTTTAACCAAGCACCCCTTGCAAAACAATATTGGCACTTCTTACAAGATCCTTCATCTTTGTTGTTTGTTGTGTTTAGGGGTCGATACTTTCCCAATTCGAATTTTCTTGAGGCTGGGGTGGGTCACTGTCCATCCTTGATCTGGTCCAATTTGGTGTGGGGAGGTGAATTGCTCAAGTGTGGCCTTCGGTGGAAAATAGGTGATGGAAGATTTGAATCTATTTACAACTCTAATTGGCTTCCTAATGGCTCTTTGTTGAGGGTTCAGTCGATGCCTTCAATTTCTGCCTCGAGCTAG

Protein sequence

MFPEMLKGSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSLIWSNLVWGGELLKCGLRWKIGDGRFESIYNSNWLPNGSLLRVQSMPSISASS
Homology
BLAST of Lcy05g017410 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 0

Query: 8   GSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSLIWSNL 67
           G G  ++  FNQA LAKQ +  +  P +LL  + R RYFP+S+ +E  VG  PS  W ++
Sbjct: 56  GLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSI 115

Query: 68  VWGGELLKCGLRWKIGDGRFESIYNSNWL 97
           + G ELL  GL   IGDG    ++   W+
Sbjct: 116 IHGRELLSRGLLRTIGDGIHTKVWLDRWI 144

BLAST of Lcy05g017410 vs. ExPASy TrEMBL
Match: A0A6J1DYS7 (uncharacterized protein LOC111025497 OS=Momordica charantia OX=3673 GN=LOC111025497 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.7e-23
Identity = 53/107 (49.53%), Postives = 69/107 (64.49%), Query Frame = 0

Query: 8   GSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSLIWSNL 67
           G G  ++E FNQA LAKQ W    DPSSLL  V + +YF N +F+EA VG   S IW +L
Sbjct: 301 GLGFRDLEFFNQALLAKQGWQIFSDPSSLLAWVLKFKYFKNCDFIEASVGSRASFIWRSL 360

Query: 68  VWGGELLKCGLRWKIGDGRFESIYNSNWLPNGSLLRVQSMPSISASS 115
           +WG +LL+ GLRW++G+G    IY  NW+P   +L VQS PS+   S
Sbjct: 361 LWGCDLLRIGLRWRVGNGANIRIYEDNWIPRDGILSVQSRPSLPKDS 407

BLAST of Lcy05g017410 vs. ExPASy TrEMBL
Match: A0A6J1E2L3 (uncharacterized protein LOC111025446 OS=Momordica charantia OX=3673 GN=LOC111025446 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.9e-23
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 0

Query: 3   PEMLKGSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSL 62
           P+   G G  ++ELFN+A LAKQ W  L +P S+L  V +GRYF N + L+A +   PS 
Sbjct: 43  PKFCGGMGFRDLELFNKALLAKQSWRILNNPDSVLAKVLKGRYFRNCDLLQAEIRGSPSF 102

Query: 63  IWSNLVWGGELLKCGLRWKIGDGRFESIYNSNWLPNGSLLRVQS 107
           IW +LVWG ELLK GLRW+IG+G   ++Y  NW+PN   L++ S
Sbjct: 103 IWRSLVWGSELLKDGLRWRIGNGENVNVYRDNWVPNQPSLKILS 146

BLAST of Lcy05g017410 vs. ExPASy TrEMBL
Match: A0A6J5TIF9 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS4077 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.4e-22
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 0

Query: 8   GSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSLIWSNL 67
           G G   +  FNQA L KQ W  L+ P+SL+  +F+ RYFP+S+FL A  G  PS  W +L
Sbjct: 813 GIGFRELTSFNQALLCKQGWRLLEFPNSLIARMFKARYFPHSDFLAASSGSLPSFTWQSL 872

Query: 68  VWGGELLKCGLRWKIGDGRFESIYNSNWLPNGSLLRVQSMPSISASS 115
           +WG +LL+ GLRW+IGDGR  +IY   W+P      +QS+P++  +S
Sbjct: 873 LWGRDLLRLGLRWRIGDGRLVNIYGDPWVPYDRFFTIQSIPTLPVTS 919

BLAST of Lcy05g017410 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.2e-22
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 0

Query: 3   PEMLKGSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSL 62
           P+   G G  ++ELFN+A LAKQ W  L  P+S+L  V +GRYF + +F+EA +   PS 
Sbjct: 640 PKCEGGMGFRDLELFNKALLAKQCWRILNHPNSMLSRVLKGRYFKDCSFMEAKISGNPSY 699

Query: 63  IWSNLVWGGELLKCGLRWKIGDGRFESIYNSNWLPNGSLLRVQSMPSI 111
           IW +++WG +LLK GLRW+IG+G    IY  NW+PN   L++ S P +
Sbjct: 700 IWRSILWGRDLLKKGLRWRIGNGDSVFIYGDNWVPNQPTLKILSSPRL 747

BLAST of Lcy05g017410 vs. ExPASy TrEMBL
Match: A0A6J5X9C6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS28254 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 0

Query: 8   GSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSLIWSNL 67
           G G   +  FNQA L KQ W  L+ P SL+  +F+ RYFP+S+FL A  G  PS  W ++
Sbjct: 88  GIGFRELISFNQALLCKQGWRLLEFPHSLIARMFKARYFPHSDFLAASSGSLPSFTWQSI 147

Query: 68  VWGGELLKCGLRWKIGDGRFESIYNSNWLPNGSLLRVQSMPSISASS 115
           +WG +LL+ GLRW+IGDGR  +IY   W+P      +QS+P++  +S
Sbjct: 148 LWGWDLLRLGLRWRIGDGRLVNIYGDPWVPYDRFFTIQSIPTLPVTS 194

BLAST of Lcy05g017410 vs. NCBI nr
Match: XP_022159057.1 (uncharacterized protein LOC111025497 [Momordica charantia])

HSP 1 Score: 117.5 bits (293), Expect = 7.7e-23
Identity = 53/107 (49.53%), Postives = 69/107 (64.49%), Query Frame = 0

Query: 8   GSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSLIWSNL 67
           G G  ++E FNQA LAKQ W    DPSSLL  V + +YF N +F+EA VG   S IW +L
Sbjct: 301 GLGFRDLEFFNQALLAKQGWQIFSDPSSLLAWVLKFKYFKNCDFIEASVGSRASFIWRSL 360

Query: 68  VWGGELLKCGLRWKIGDGRFESIYNSNWLPNGSLLRVQSMPSISASS 115
           +WG +LL+ GLRW++G+G    IY  NW+P   +L VQS PS+   S
Sbjct: 361 LWGCDLLRIGLRWRVGNGANIRIYEDNWIPRDGILSVQSRPSLPKDS 407

BLAST of Lcy05g017410 vs. NCBI nr
Match: XP_022159001.1 (uncharacterized protein LOC111025446 [Momordica charantia])

HSP 1 Score: 117.1 bits (292), Expect = 1.0e-22
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 0

Query: 3   PEMLKGSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSL 62
           P+   G G  ++ELFN+A LAKQ W  L +P S+L  V +GRYF N + L+A +   PS 
Sbjct: 43  PKFCGGMGFRDLELFNKALLAKQSWRILNNPDSVLAKVLKGRYFRNCDLLQAEIRGSPSF 102

Query: 63  IWSNLVWGGELLKCGLRWKIGDGRFESIYNSNWLPNGSLLRVQS 107
           IW +LVWG ELLK GLRW+IG+G   ++Y  NW+PN   L++ S
Sbjct: 103 IWRSLVWGSELLKDGLRWRIGNGENVNVYRDNWVPNQPSLKILS 146

BLAST of Lcy05g017410 vs. NCBI nr
Match: XP_008237273.1 (PREDICTED: uncharacterized protein LOC103336015 [Prunus mume])

HSP 1 Score: 115.2 bits (287), Expect = 3.8e-22
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 0

Query: 8    GSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSLIWSNL 67
            G G   +  FNQA L KQ W  L+ P SL+  + + RYFPNS+FL A  G  PS  W +L
Sbjct: 1251 GLGFRELTSFNQALLCKQGWRLLEFPHSLIARMLKARYFPNSDFLAASSGSLPSFTWQSL 1310

Query: 68   VWGGELLKCGLRWKIGDGRFESIYNSNWLPNGSLLRVQSMPSISASS 115
            +WG +LL+ GLRW+IGDGR  +IY   W+P      +QS+P++ A+S
Sbjct: 1311 LWGRDLLRLGLRWRIGDGRLVNIYGDPWVPYDRFFTIQSIPTLPATS 1357

BLAST of Lcy05g017410 vs. NCBI nr
Match: CAB4263564.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 114.8 bits (286), Expect = 5.0e-22
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 0

Query: 8   GSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSLIWSNL 67
           G G   +  FNQA L KQ W  L+ P+SL+  +F+ RYFP+S+FL A  G  PS  W +L
Sbjct: 813 GIGFRELTSFNQALLCKQGWRLLEFPNSLIARMFKARYFPHSDFLAASSGSLPSFTWQSL 872

Query: 68  VWGGELLKCGLRWKIGDGRFESIYNSNWLPNGSLLRVQSMPSISASS 115
           +WG +LL+ GLRW+IGDGR  +IY   W+P      +QS+P++  +S
Sbjct: 873 LWGRDLLRLGLRWRIGDGRLVNIYGDPWVPYDRFFTIQSIPTLPVTS 919

BLAST of Lcy05g017410 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 6.5e-22
Identity = 50/108 (46.30%), Postives = 71/108 (65.74%), Query Frame = 0

Query: 3   PEMLKGSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSL 62
           P+   G G  ++ELFN+A LAKQ W  L  P+S+L  V +GRYF + +F+EA +   PS 
Sbjct: 640 PKCEGGMGFRDLELFNKALLAKQCWRILNHPNSMLSRVLKGRYFKDCSFMEAKISGNPSY 699

Query: 63  IWSNLVWGGELLKCGLRWKIGDGRFESIYNSNWLPNGSLLRVQSMPSI 111
           IW +++WG +LLK GLRW+IG+G    IY  NW+PN   L++ S P +
Sbjct: 700 IWRSILWGRDLLKKGLRWRIGNGDSVFIYGDNWVPNQPTLKILSSPRL 747

BLAST of Lcy05g017410 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-15
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 0

Query: 8   GSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSLIWSNL 67
           G G  +IE FN A L KQ W  L  P SL+  VF+ RYF  S+ L A +G  PS +W ++
Sbjct: 55  GIGFKDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSI 114

Query: 68  VWGGELLKCGLRWKIGDGRFESIYNSNWL---PNGSLLRVQSMP 109
               E+L+ G R  +G+G    I+   WL   P  + LR+Q +P
Sbjct: 115 HASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVP 158

BLAST of Lcy05g017410 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 77.4 bits (189), Expect = 8.2e-15
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 0

Query: 8   GSGISNIELFNQAPLAKQYWHFLQDPSSLLFVVFRGRYFPNSNFLEAGVGHCPSLIWSNL 67
           G G  ++  FNQA LAKQ +  +  P +LL  + R RYFP+S+ +E  VG  PS  W ++
Sbjct: 56  GLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSI 115

Query: 68  VWGGELLKCGLRWKIGDGRFESIYNSNWL 97
           + G ELL  GL   IGDG    ++   W+
Sbjct: 116 IHGRELLSRGLLRTIGDGIHTKVWLDRWI 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P932951.2e-1340.45Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A6J1DYS73.7e-2349.53uncharacterized protein LOC111025497 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1E2L34.9e-2349.04uncharacterized protein LOC111025446 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J5TIF92.4e-2245.79Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=... [more]
A0A6J1DAR43.2e-2246.30uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J5X9C61.2e-2144.86Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS28254 PE=... [more]
Match NameE-valueIdentityDescription
XP_022159057.17.7e-2349.53uncharacterized protein LOC111025497 [Momordica charantia][more]
XP_022159001.11.0e-2249.04uncharacterized protein LOC111025446 [Momordica charantia][more]
XP_008237273.13.8e-2246.73PREDICTED: uncharacterized protein LOC103336015 [Prunus mume][more]
CAB4263564.15.0e-2245.79unnamed protein product [Prunus armeniaca][more]
XP_022150918.16.5e-2246.30uncharacterized protein LOC111018954 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT4G29090.11.3e-1539.42Ribonuclease H-like superfamily protein [more]
ATMG00310.18.2e-1540.45RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g017410.1Lcy05g017410.1mRNA