Lcy05g017380 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGGCGAGATTCTGGTGGGGATCCACAGAGACGAAAAGAAGAATTCATTGGAAAAAAGGGAATAAATTATGCCTTCCAAAAGAGCTTGGTGGTTTAAACTTCCGTGACTTGGTGCTTTTTAATAAAGCTTTGCTAGCCAAACAGGTATGGAGACTATTCACAAATCCAAACTTATTGGTTTCCAAGGTCATCAAAGGCATATATGCTCCGCATGATTCACTTCTGATAGCTCCAGTCAAATCTAATTGTTCTGTTTTTTGGAGAGGCTTTGTCTGGGCCCGGGAGTTATTGCGTTCTGGATTAAGGAAAAGGATTGGGAATGGACTAACCACATACTTCTTTACGGATCCCTGGATCCCAAAAGAAATCACATTTAAGCCATCCAGAGCCATTGGTGTAGAACTTCATGAAGAACTACGAGTATCTGAATTCATTACACCATCTTTAGGATGGAATATGGATAAGCTAAAGACTATGGTGAGTGAGGAGGATGTCAATCTAATTGCCACCATTCCTATTAGCTCAAGTAATGACGATGATACATGGATTTGGCATTATTGTTCTAATGGCCATTATGCAGTGAGAAGTGGATACAAACTTGCCATGACTTTATCAAATGATGCAAAATCAGCAAGTAGTGAAGATTTGAGACAGTGGTGGAATACTCTTTGGAAAATCAAAATACCATCAAAAGTGAAGTTATTCATATGGCGGACTTTCCATGAATGCTTACCTACCAATTACTGTTTATGGCAGCGAGGTATTGAGGTATCACCTATATGCAATATATGCCAATCAGCTAAGGAGACCATCGATCATGCTTTATGTGGTTGTAAGCGTGCAAGGCGAATAGGTGATACCATTTTAGCAATGTTTATCATAATATGGAAATTTTAGATTGGATGCAGCGGTGCGAGTGGATCCAAGACTATATAGAGAGCACCAGCACAAAGATGAGACAGACCTCTAGCATAGTTCCCCCTGCATTCGTGCCTCATATGCCAATGTGTTCAGTTCAATTATATACTGATGCAGTGATTGGTTCGGACCAAACAGGGGTTGGATATGGGGCCATTATTCTTCATTCTGATGGCGAGGTGCGGGGCGCAATGGAGTCTTACGAAACAACACCACATACACCTTTAGCAGCAGAAGTGAATGCCATAATATATGGTATTAGATTATTGTAA ATGATGGCGAGATTCTGGTGGGGATCCACAGAGACGAAAAGAAGAATTCATTGGAAAAAAGGGAATAAATTATGCCTTCCAAAAGAGCTTGGTGGTTTAAACTTCCGTGACTTGGTGCTTTTTAATAAAGCTTTGCTAGCCAAACAGGTATGGAGACTATTCACAAATCCAAACTTATTGGTTTCCAAGGTCATCAAAGGCATATATGCTCCGCATGATTCACTTCTGATAGCTCCAGTCAAATCTAATTGTTCTGTTTTTTGGAGAGGCTTTGTCTGGGCCCGGGAGTTATTGCGTTCTGGATTAAGGAAAAGGATTGGGAATGGACTAACCACATACTTCTTTACGGATCCCTGGATCCCAAAAGAAATCACATTTAAGCCATCCAGAGCCATTGGTGTAGAACTTCATGAAGAACTACGAGTATCTGAATTCATTACACCATCTTTAGGATGGAATATGGATAAGCTAAAGACTATGGTGAGTGAGGAGGATGTCAATCTAATTGCCACCATTCCTATTAGCTCAATTCAATTATATACTGATGCAGTGATTGGTTCGGACCAAACAGGGGTTGGATATGGGGCCATTATTCTTCATTCTGATGGCGAGGTGCGGGGCGCAATGGAGTCTTACGAAACAACACCACATACACCTTTAGCAGCAGAAGTGAATGCCATAATATATGGTATTAGATTATTGTAA ATGATGGCGAGATTCTGGTGGGGATCCACAGAGACGAAAAGAAGAATTCATTGGAAAAAAGGGAATAAATTATGCCTTCCAAAAGAGCTTGGTGGTTTAAACTTCCGTGACTTGGTGCTTTTTAATAAAGCTTTGCTAGCCAAACAGGTATGGAGACTATTCACAAATCCAAACTTATTGGTTTCCAAGGTCATCAAAGGCATATATGCTCCGCATGATTCACTTCTGATAGCTCCAGTCAAATCTAATTGTTCTGTTTTTTGGAGAGGCTTTGTCTGGGCCCGGGAGTTATTGCGTTCTGGATTAAGGAAAAGGATTGGGAATGGACTAACCACATACTTCTTTACGGATCCCTGGATCCCAAAAGAAATCACATTTAAGCCATCCAGAGCCATTGGTGTAGAACTTCATGAAGAACTACGAGTATCTGAATTCATTACACCATCTTTAGGATGGAATATGGATAAGCTAAAGACTATGGTGAGTGAGGAGGATGTCAATCTAATTGCCACCATTCCTATTAGCTCAATTCAATTATATACTGATGCAGTGATTGGTTCGGACCAAACAGGGGTTGGATATGGGGCCATTATTCTTCATTCTGATGGCGAGGTGCGGGGCGCAATGGAGTCTTACGAAACAACACCACATACACCTTTAGCAGCAGAAGTGAATGCCATAATATATGGTATTAGATTATTGTAA MMARFWWGSTETKRRIHWKKGNKLCLPKELGGLNFRDLVLFNKALLAKQVWRLFTNPNLLVSKVIKGIYAPHDSLLIAPVKSNCSVFWRGFVWARELLRSGLRKRIGNGLTTYFFTDPWIPKEITFKPSRAIGVELHEELRVSEFITPSLGWNMDKLKTMVSEEDVNLIATIPISSIQLYTDAVIGSDQTGVGYGAIILHSDGEVRGAMESYETTPHTPLAAEVNAIIYGIRLL Homology
BLAST of Lcy05g017380 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 7.9e-25 Identity = 57/128 (44.53%), Postives = 75/128 (58.59%), Query Frame = 0
BLAST of Lcy05g017380 vs. ExPASy TrEMBL
Match: A0A6J1BRN0 (uncharacterized protein LOC111004787 OS=Momordica charantia OX=3673 GN=LOC111004787 PE=4 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 8.7e-43 Identity = 87/177 (49.15%), Postives = 123/177 (69.49%), Query Frame = 0
BLAST of Lcy05g017380 vs. ExPASy TrEMBL
Match: A0A803Q105 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 4.0e-40 Identity = 84/175 (48.00%), Postives = 108/175 (61.71%), Query Frame = 0
BLAST of Lcy05g017380 vs. ExPASy TrEMBL
Match: A0A803NWD5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 1.1e-37 Identity = 80/192 (41.67%), Postives = 114/192 (59.38%), Query Frame = 0
BLAST of Lcy05g017380 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 1.9e-37 Identity = 84/178 (47.19%), Postives = 109/178 (61.24%), Query Frame = 0
BLAST of Lcy05g017380 vs. ExPASy TrEMBL
Match: A0A803NM27 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 2.4e-37 Identity = 79/175 (45.14%), Postives = 103/175 (58.86%), Query Frame = 0
BLAST of Lcy05g017380 vs. NCBI nr
Match: XP_022131662.1 (uncharacterized protein LOC111004787 [Momordica charantia]) HSP 1 Score: 183.7 bits (465), Expect = 1.8e-42 Identity = 87/177 (49.15%), Postives = 123/177 (69.49%), Query Frame = 0
BLAST of Lcy05g017380 vs. NCBI nr
Match: XP_030483769.1 (uncharacterized protein LOC115700339 [Cannabis sativa]) HSP 1 Score: 177.6 bits (449), Expect = 1.3e-40 Identity = 85/175 (48.57%), Postives = 108/175 (61.71%), Query Frame = 0
BLAST of Lcy05g017380 vs. NCBI nr
Match: XP_030505522.1 (uncharacterized protein LOC115720515 [Cannabis sativa]) HSP 1 Score: 174.1 bits (440), Expect = 1.4e-39 Identity = 84/175 (48.00%), Postives = 110/175 (62.86%), Query Frame = 0
BLAST of Lcy05g017380 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia]) HSP 1 Score: 166.0 bits (419), Expect = 3.9e-37 Identity = 84/178 (47.19%), Postives = 109/178 (61.24%), Query Frame = 0
BLAST of Lcy05g017380 vs. NCBI nr
Match: XP_030486817.1 (uncharacterized protein LOC115703723 [Cannabis sativa]) HSP 1 Score: 162.2 bits (409), Expect = 5.6e-36 Identity = 77/194 (39.69%), Postives = 115/194 (59.28%), Query Frame = 0
BLAST of Lcy05g017380 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 115.5 bits (288), Expect = 5.6e-26 Identity = 57/128 (44.53%), Postives = 75/128 (58.59%), Query Frame = 0
BLAST of Lcy05g017380 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 99.8 bits (247), Expect = 3.2e-21 Identity = 56/179 (31.28%), Postives = 88/179 (49.16%), Query Frame = 0
BLAST of Lcy05g017380 vs. TAIR 10
Match: AT3G25720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein ) HSP 1 Score: 50.8 bits (120), Expect = 1.7e-06 Identity = 36/104 (34.62%), Postives = 47/104 (45.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|