Lcy05g017300 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g017300
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	SWIM-type domain-containing protein
Location	Chr05: 28384450 .. 28386338 (+)
RNA-Seq Expression	Lcy05g017300
Synteny	Lcy05g017300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCACGTAAACATGCAGATATACCCTGTTGATAGAGTGCAGTTCCAAGTCCATGATAAATACAAGCAGTTCGAAGTAAATATCAGCAACCGGAGTTGCACGTGCAGGAGGTGGGATTTAGATCTTATCCCATGTGCCCATGCATGCATGGCTATTCACCACAAGGGGTTGGGCATCGATTCATTTGTCCATGAGTTTTACCACAACTCAAACCTCCAAAAGATGTACAGTGCAAACGTTCACCCTATTGGATCGATGAGGAATGATTCAGTTTCAGCAACAGCCGAGGTTAACGTAGTTCACCCCCCCAATTCAAAACGTGGTGCTGGGAGGCCGAAAAAGAGGAGGATTAAGCATCATAGTGAAAGGGTGCAGTCTCAAAGGTGTGGACGGTGCGGGCAGGTAGGCCATAATCGTAGGGGATGCAAAAACCCCATCGCTCGATGAGTTGTGCCTTCCTTTTCCATCTTTCCGAATTTTGTGTGGTTTAAGTTTTGTGCAGTGTTAAAATAATTCAATGAAGCTATGAATAATTGTTTATTTATACACACATTTCCATCTATGTACTGGTTTCCGCAACTATCATTAATTTTTTCTTTACACAAGTTTTTTTTTGGAGGATGAGACATTTTGTTTGAAAGTTTATTCCTTATATGGTTCAAGGAATATTAGTGCGACAGGGGGGGTATATTTGGGTATCCACCGGGTGTGATGAGTTCACAATATACAATTGTTCAAAAGTTAGCATTCATACATAGATGACATCATCGTACTGACTGAATGCAACGAAATGGGGTGAGAAGACCTATTGGTTGAAATTTGTTCGCTGTATTATAAAAGAAATACGAGTGCTGCAGAGGGGGTATATCGGGGTATCCACCAGATGGTGGGTTGTTTACAGTATACAATTCTTTAAACAATAGCATACATATGATCTACATTATACCAACCGGATGCACCGAAATTTTCGGCAGCATAACGGCATACATATGACTAAACCAATTTCTTTTTAAACCTGTAGAACAACAAAAACACTTCCATATAACAATCTCAACATTCAAAGTACATTTGCACATCCAAAGAGTAGCAACACATGAGCGTCCCAACTCATGCATTTGTCAACAAGTTTATATCGCAAGCCAACAAACATAATCAGTTTCCAAAGTGATTTTTACATCGCAAGGCAACAAACCAAGAAATCATAACATAGTCTACCCAATCAAGCATCCATATGTTGTCCATAACAAACATAATCAGTTTTTAACAAAAGAAACCCTAACAGATGAAGGTAATTATAACAAACTAAGTAGCAAGGCCTAAAAAACGTTTGTAGCAACAAAACCAGTCTTAACCCTGACTGAGATGAAGATCAAAAGACGGCTGGAAGAATTCTGGCGGTAGGGATTCCCTCGATTCTTTTGTCCACGTGCCCCTCATCGCGTCCACATAAATTCCTGTGGCTTACAGGCTCCCCACTTCTTCCACACAATCTGAGCCCTTGGCTCCCCCCCGGGTTATGGTACCGTTAACCTGCGCGTTTTAATAGTATGTATATAAAGCGAATTACATACTATGAACAAACAGTTTCAATATATTCAGCATGCATATATACACCTCACGGAGGGGCTGCCTATTTTGAATGAGCAGAGTGGTAGGTTCCTTAATTTTTATTCCCTTGGCCTACAAACACAAAAATAATAGTGAACGTTTTATTTTCTCTAACAATATTCAACTATGGGAGTTCCAATATATAGGGTTGTTTACCTTTGCAGACCATCGGGGGCCAAGTTGTGGAACTGTGGTTCTTGGTATGGTATGAGGTCCTTCCTGTTGTTAGGGTAGCAAGTCAGGAAGTATATGAATGTGAACAGTTTCAGTTGGAATAA

mRNA sequence

ATGTTTCACGTAAACATGCAGATATACCCTGTTGATAGAGTGCAGTTCCAAGTCCATGATAAATACAAGCAGTTCGAAGTAAATATCAGCAACCGGAGTTGCACGTGCAGGAGGTGGGATTTAGATCTTATCCCATGTGCCCATGCATGCATGGCTATTCACCACAAGGGGTTGGGCATCGATTCATTTGTCCATGAGTTTTACCACAACTCAAACCTCCAAAAGATGTACAGTGCAAACGTTCACCCTATTGGATCGATGAGGAATGATTCAGTTTCAGCAACAGCCGAGGTTAACGTAGTTCACCCCCCCAATTCAAAACGTGGTGCTGGGAGGCCGAAAAAGAGGAGGATTAAGCATCATAGTGAAAGGGTGCAGTCTCAAAGGTGTGGACGGTGCGGGCAGACCATCGGGGGCCAAGTTGTGGAACTGTGGTTCTTGGTATGGTATGAGGTCCTTCCTGTTGTTAGGGTAGCAAGTCAGGAAGTATATGAATGTGAACAGTTTCAGTTGGAATAA

Coding sequence (CDS)

ATGTTTCACGTAAACATGCAGATATACCCTGTTGATAGAGTGCAGTTCCAAGTCCATGATAAATACAAGCAGTTCGAAGTAAATATCAGCAACCGGAGTTGCACGTGCAGGAGGTGGGATTTAGATCTTATCCCATGTGCCCATGCATGCATGGCTATTCACCACAAGGGGTTGGGCATCGATTCATTTGTCCATGAGTTTTACCACAACTCAAACCTCCAAAAGATGTACAGTGCAAACGTTCACCCTATTGGATCGATGAGGAATGATTCAGTTTCAGCAACAGCCGAGGTTAACGTAGTTCACCCCCCCAATTCAAAACGTGGTGCTGGGAGGCCGAAAAAGAGGAGGATTAAGCATCATAGTGAAAGGGTGCAGTCTCAAAGGTGTGGACGGTGCGGGCAGACCATCGGGGGCCAAGTTGTGGAACTGTGGTTCTTGGTATGGTATGAGGTCCTTCCTGTTGTTAGGGTAGCAAGTCAGGAAGTATATGAATGTGAACAGTTTCAGTTGGAATAA

Protein sequence

MFHVNMQIYPVDRVQFQVHDKYKQFEVNISNRSCTCRRWDLDLIPCAHACMAIHHKGLGIDSFVHEFYHNSNLQKMYSANVHPIGSMRNDSVSATAEVNVVHPPNSKRGAGRPKKRRIKHHSERVQSQRCGRCGQTIGGQVVELWFLVWYEVLPVVRVASQEVYECEQFQLE

Homology

[Close]

BLAST of Lcy05g017300 vs. ExPASy TrEMBL
Match: A0A6J1DXB4 (uncharacterized protein LOC111023978 OS=Momordica charantia OX=3673 GN=LOC111023978 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.9e-27
Identity = 61/128 (47.66%), Postives = 83/128 (64.84%), Query Frame = 0


Query: 6   MQIYPVDRVQFQVHDKYKQFEVNISNRSCTCRRWDLDLIPCAHACMAIHHKGLGIDSFVH 65
           M IYPVD+  + VH+  + F VNI + +C  ++WD+D IPC+HAC+AI  +GL + SFVH
Sbjct: 103 MDIYPVDQYLYDVHNDDRHFNVNILHCTCNFKQWDIDFIPCSHACLAISRRGLELHSFVH 162

Query: 66  EFYHNSNLQKMYSANVHPIGSMRNDSVSATAEVNVVHPPNSKRGAGRPKKRRIKHHSERV 125
           +FYH   LQ +YS NVHPIG + N       +   + PPN KR AGRP+K+R+    E  
Sbjct: 163 KFYHVKTLQLLYSWNVHPIGQIENILPPVQPDDTGILPPNVKRSAGRPRKKRLISRVEAT 222

Query: 126 QSQRCGRC 134
            + RCGRC
Sbjct: 223 NTVRCGRC 230

[Close]

BLAST of Lcy05g017300 vs. ExPASy TrEMBL
Match: A0A5D3CDB8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00210 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   NMQIYPVDRVQFQVHDKYKQFEVNISNRSCTCRRWDLDLIPCAHACMAIHHKGLGIDSFV 64
           +M IYPVD+ +F+VH + +QF VNI NR+C+CR+WDLDLIPC+HAC+A+  + L +  + 
Sbjct: 307 SMNIYPVDQHEFEVHHRKEQFVVNILNRTCSCRQWDLDLIPCSHACIALSTRNLNLHLYT 366

Query: 65  HEFYHNSNLQKMYSANVHPIGSMRNDSVSATAEVNVVHPPNSKRGAGRPKKRRIKHHSER 124
            +FY+ SNL  +Y     PIG++     +     + + PP  KR AGRPKK+R     E+
Sbjct: 367 DKFYYVSNLINLYKKGTRPIGTVNQIRNTHQGGNDGILPPQVKRPAGRPKKKRFTSFLEK 426

Query: 125 VQSQRCGRCGQ 136
             S RC RCG+
Sbjct: 427 KASVRCSRCGK 437

[Close]

BLAST of Lcy05g017300 vs. ExPASy TrEMBL
Match: A0A5A7T2S1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00270 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   NMQIYPVDRVQFQVHDKYKQFEVNISNRSCTCRRWDLDLIPCAHACMAIHHKGLGIDSFV 64
           +M IYPVD+ +F+VH + +QF VNI NR+C+CR+WDLDLIPC+HAC+A+  + L +  + 
Sbjct: 278 SMNIYPVDQHEFEVHHRKEQFVVNILNRTCSCRQWDLDLIPCSHACIALSTRNLNLHLYT 337

Query: 65  HEFYHNSNLQKMYSANVHPIGSMRNDSVSATAEVNVVHPPNSKRGAGRPKKRRIKHHSER 124
            +FY+ SNL  +Y     PIG++     +     + + PP  KR AGRPKK+R     E+
Sbjct: 338 DKFYYVSNLINLYKKGTRPIGTVNQIRNTHQGGNDGILPPQVKRPAGRPKKKRFTSFLEK 397

Query: 125 VQSQRCGRCGQ 136
             S RC RCG+
Sbjct: 398 KASVRCSRCGK 408

[Close]

BLAST of Lcy05g017300 vs. ExPASy TrEMBL
Match: A0A1S3B5C9 (uncharacterized protein LOC103486212 OS=Cucumis melo OX=3656 GN=LOC103486212 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   NMQIYPVDRVQFQVHDKYKQFEVNISNRSCTCRRWDLDLIPCAHACMAIHHKGLGIDSFV 64
           +M IYPVD+ +F+VH + +QF VNI NR+C+CR+WDLDLIPC+HAC+A+  + L +  + 
Sbjct: 165 SMNIYPVDQHEFEVHHRKEQFVVNILNRTCSCRQWDLDLIPCSHACIALSTRNLNLHLYT 224

Query: 65  HEFYHNSNLQKMYSANVHPIGSMRNDSVSATAEVNVVHPPNSKRGAGRPKKRRIKHHSER 124
            +FY+ SNL  +Y     PIG++     +     + + PP  KR AGRPKK+R     E+
Sbjct: 225 DKFYYVSNLINLYKKGTRPIGTVNQIRNTHQGGNDGILPPQVKRPAGRPKKKRFTSFLEK 284

Query: 125 VQSQRCGRCGQ 136
             S RC RCG+
Sbjct: 285 KASVRCSRCGK 295

[Close]

BLAST of Lcy05g017300 vs. ExPASy TrEMBL
Match: A0A5A7U1T3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00630 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.5e-25
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   NMQIYPVDRVQFQVHDKYKQFEVNISNRSCTCRRWDLDLIPCAHACMAIHHKGLGIDSFV 64
           +M IYPVD+ +F+VH   +QF VNI NR+C+CR+WDLDLIPC+HAC+A+  + L +  + 
Sbjct: 293 SMNIYPVDQHEFEVHHCKEQFVVNILNRTCSCRQWDLDLIPCSHACIALSTRNLNLHLYT 352

Query: 65  HEFYHNSNLQKMYSANVHPIGSMRNDSVSATAEVNVVHPPNSKRGAGRPKKRRIKHHSER 124
           ++FY+ SNL  +Y     PIG++     +     + + PP  KR AGRPKK+R     E+
Sbjct: 353 NKFYYVSNLINLYKKGTRPIGTVNQIRNTHQGGNDGILPPQVKRPAGRPKKKRFTSFLEK 412

Query: 125 VQSQRCGRCGQ 136
             S RC RCG+
Sbjct: 413 KASVRCSRCGK 423

[Close]

BLAST of Lcy05g017300 vs. NCBI nr
Match: XP_022157216.1 (uncharacterized protein LOC111023978 [Momordica charantia])

HSP 1 Score: 131.7 bits (330), Expect = 5.9e-27
Identity = 61/128 (47.66%), Postives = 83/128 (64.84%), Query Frame = 0


Query: 6   MQIYPVDRVQFQVHDKYKQFEVNISNRSCTCRRWDLDLIPCAHACMAIHHKGLGIDSFVH 65
           M IYPVD+  + VH+  + F VNI + +C  ++WD+D IPC+HAC+AI  +GL + SFVH
Sbjct: 103 MDIYPVDQYLYDVHNDDRHFNVNILHCTCNFKQWDIDFIPCSHACLAISRRGLELHSFVH 162

Query: 66  EFYHNSNLQKMYSANVHPIGSMRNDSVSATAEVNVVHPPNSKRGAGRPKKRRIKHHSERV 125
           +FYH   LQ +YS NVHPIG + N       +   + PPN KR AGRP+K+R+    E  
Sbjct: 163 KFYHVKTLQLLYSWNVHPIGQIENILPPVQPDDTGILPPNVKRSAGRPRKKRLISRVEAT 222

Query: 126 QSQRCGRC 134
            + RCGRC
Sbjct: 223 NTVRCGRC 230

[Close]

BLAST of Lcy05g017300 vs. NCBI nr
Match: XP_008442298.1 (PREDICTED: uncharacterized protein LOC103486212 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-25
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   NMQIYPVDRVQFQVHDKYKQFEVNISNRSCTCRRWDLDLIPCAHACMAIHHKGLGIDSFV 64
           +M IYPVD+ +F+VH + +QF VNI NR+C+CR+WDLDLIPC+HAC+A+  + L +  + 
Sbjct: 165 SMNIYPVDQHEFEVHHRKEQFVVNILNRTCSCRQWDLDLIPCSHACIALSTRNLNLHLYT 224

Query: 65  HEFYHNSNLQKMYSANVHPIGSMRNDSVSATAEVNVVHPPNSKRGAGRPKKRRIKHHSER 124
            +FY+ SNL  +Y     PIG++     +     + + PP  KR AGRPKK+R     E+
Sbjct: 225 DKFYYVSNLINLYKKGTRPIGTVNQIRNTHQGGNDGILPPQVKRPAGRPKKKRFTSFLEK 284

Query: 125 VQSQRCGRCGQ 136
             S RC RCG+
Sbjct: 285 KASVRCSRCGK 295

[Close]

BLAST of Lcy05g017300 vs. NCBI nr
Match: KAA0035755.1 (uncharacterized protein E6C27_scaffold403G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-25
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   NMQIYPVDRVQFQVHDKYKQFEVNISNRSCTCRRWDLDLIPCAHACMAIHHKGLGIDSFV 64
           +M IYPVD+ +F+VH + +QF VNI NR+C+CR+WDLDLIPC+HAC+A+  + L +  + 
Sbjct: 278 SMNIYPVDQHEFEVHHRKEQFVVNILNRTCSCRQWDLDLIPCSHACIALSTRNLNLHLYT 337

Query: 65  HEFYHNSNLQKMYSANVHPIGSMRNDSVSATAEVNVVHPPNSKRGAGRPKKRRIKHHSER 124
            +FY+ SNL  +Y     PIG++     +     + + PP  KR AGRPKK+R     E+
Sbjct: 338 DKFYYVSNLINLYKKGTRPIGTVNQIRNTHQGGNDGILPPQVKRPAGRPKKKRFTSFLEK 397

Query: 125 VQSQRCGRCGQ 136
             S RC RCG+
Sbjct: 398 KASVRCSRCGK 408

[Close]

BLAST of Lcy05g017300 vs. NCBI nr
Match: TYK09853.1 (uncharacterized protein E5676_scaffold39G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-25
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   NMQIYPVDRVQFQVHDKYKQFEVNISNRSCTCRRWDLDLIPCAHACMAIHHKGLGIDSFV 64
           +M IYPVD+ +F+VH + +QF VNI NR+C+CR+WDLDLIPC+HAC+A+  + L +  + 
Sbjct: 307 SMNIYPVDQHEFEVHHRKEQFVVNILNRTCSCRQWDLDLIPCSHACIALSTRNLNLHLYT 366

Query: 65  HEFYHNSNLQKMYSANVHPIGSMRNDSVSATAEVNVVHPPNSKRGAGRPKKRRIKHHSER 124
            +FY+ SNL  +Y     PIG++     +     + + PP  KR AGRPKK+R     E+
Sbjct: 367 DKFYYVSNLINLYKKGTRPIGTVNQIRNTHQGGNDGILPPQVKRPAGRPKKKRFTSFLEK 426

Query: 125 VQSQRCGRCGQ 136
             S RC RCG+
Sbjct: 427 KASVRCSRCGK 437

[Close]

BLAST of Lcy05g017300 vs. NCBI nr
Match: KAA0047595.1 (uncharacterized protein E6C27_scaffold115G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 7.3e-25
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 5   NMQIYPVDRVQFQVHDKYKQFEVNISNRSCTCRRWDLDLIPCAHACMAIHHKGLGIDSFV 64
           +M IYPVD+ +F+VH   +QF VNI NR+C+CR+WDLDLIPC+HAC+A+  + L +  + 
Sbjct: 293 SMNIYPVDQHEFEVHHCKEQFVVNILNRTCSCRQWDLDLIPCSHACIALSTRNLNLHLYT 352

Query: 65  HEFYHNSNLQKMYSANVHPIGSMRNDSVSATAEVNVVHPPNSKRGAGRPKKRRIKHHSER 124
           ++FY+ SNL  +Y     PIG++     +     + + PP  KR AGRPKK+R     E+
Sbjct: 353 NKFYYVSNLINLYKKGTRPIGTVNQIRNTHQGGNDGILPPQVKRPAGRPKKKRFTSFLEK 412

Query: 125 VQSQRCGRCGQ 136
             S RC RCG+
Sbjct: 413 KASVRCSRCGK 423

The following BLAST results are available for this feature:

BLAST of Lcy05g017300 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g017300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXB4	2.9e-27	47.66	uncharacterized protein LOC111023978 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5D3CDB8	1.6e-25	45.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T2S1	1.6e-25	45.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3B5C9	1.6e-25	45.04	uncharacterized protein LOC103486212 OS=Cucumis melo OX=3656 GN=LOC103486212 PE=...	[more]
A0A5A7U1T3	3.5e-25	45.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lcy05g017300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157216.1	5.9e-27	47.66	uncharacterized protein LOC111023978 [Momordica charantia]	[more]
XP_008442298.1	3.3e-25	45.04	PREDICTED: uncharacterized protein LOC103486212 [Cucumis melo]	[more]
KAA0035755.1	3.3e-25	45.04	uncharacterized protein E6C27_scaffold403G00270 [Cucumis melo var. makuwa]	[more]
TYK09853.1	3.3e-25	45.04	uncharacterized protein E5676_scaffold39G00210 [Cucumis melo var. makuwa]	[more]
KAA0047595.1	7.3e-25	45.04	uncharacterized protein E6C27_scaffold115G00630 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy05g017300 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 32..59 e-value: 7.1E-6 score: 35.5
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 25..56 e-value: 7.5E-7 score: 28.7
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 25..57 score: 9.61879
None	No IPR available	PANTHER	PTHR31973:SF90	OS12G0597300 PROTEIN	coord: 21..134
None	No IPR available	PANTHER	PTHR31973	POLYPROTEIN, PUTATIVE-RELATED	coord: 21..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g017300.1	Lcy05g017300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:0008270	zinc ion binding