Lcy05g017150 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g017150
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Pectin lyase-like superfamily protein
Location	Chr05: 26664425 .. 26664805 (+)
RNA-Seq Expression	Lcy05g017150
Synteny	Lcy05g017150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAATGTCAGATATCCTATCATCATCGATCAAAATTACTTCCCCCACAATAAAGATTGTCCTGGACAGGTGCGTATTGATATCTATACAACTATATATATATATATATCAAAGGATAGATCTAAACTAAACTTTTATATTTTGTTTCTTCACATTGAATAGGCTTCTAGAATTAAAGTTAGTGATGTGACATATGAAGATATCCATGGGACATTAGCCAAACAGGTTGTCATGAAATTTGATTGTAGCCCAAAGTTTCCTTGCATGGGGATAAAGTTGGAAGATGTAAAGCTGACTTACAAGAATGGAGTAGCCAAATGCTCGAGGAACTGTTGTTGGCTTGGTTCAACCAATGAGTTGTTTTTAGGAAATTTTTAA

mRNA sequence

ATGGACAATGTCAGATATCCTATCATCATCGATCAAAATTACTTCCCCCACAATAAAGATTGTCCTGGACAGGCTTCTAGAATTAAAGTTAGTGATGTGACATATGAAGATATCCATGGGACATTAGCCAAACAGGTTGTCATGAAATTTGATTGTAGCCCAAAGTTTCCTTGCATGGGGATAAAGTTGGAAGATGTAAAGCTGACTTACAAGAATGGAGTAGCCAAATGCTCGAGGAACTGTTGTTGGCTTGGTTCAACCAATGAGTTGTTTTTAGGAAATTTTTAA

Coding sequence (CDS)

ATGGACAATGTCAGATATCCTATCATCATCGATCAAAATTACTTCCCCCACAATAAAGATTGTCCTGGACAGGCTTCTAGAATTAAAGTTAGTGATGTGACATATGAAGATATCCATGGGACATTAGCCAAACAGGTTGTCATGAAATTTGATTGTAGCCCAAAGTTTCCTTGCATGGGGATAAAGTTGGAAGATGTAAAGCTGACTTACAAGAATGGAGTAGCCAAATGCTCGAGGAACTGTTGTTGGCTTGGTTCAACCAATGAGTTGTTTTTAGGAAATTTTTAA

Protein sequence

MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMGIKLEDVKLTYKNGVAKCSRNCCWLGSTNELFLGNF

Homology

[Close]

BLAST of Lcy05g017150 vs. ExPASy Swiss-Prot
Match: P48979 (Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.8e-26
Identity = 56/89 (62.92%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV  PI+IDQ+Y P NK CPGQ S +++SDVTYEDIHGT A +V +KFDCSPK PC  
Sbjct: 298 MVNVENPIVIDQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCRE 357

Query: 61  IKLEDVKLTYKNGVAKCSRNCCWLGSTNE 90
           IKLEDVKLTYKN  A+ S  C     T E
Sbjct: 358 IKLEDVKLTYKNQAAESS--CSHADGTTE 384

[Close]

BLAST of Lcy05g017150 vs. ExPASy Swiss-Prot
Match: P35336 (Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.1e-16
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV  PIIIDQNY   +K C  Q+S ++V +V Y++I GT A  V + FDCS +FPC G
Sbjct: 361 MHNVENPIIIDQNYCDQDKPCQEQSSAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQG 420

Query: 61  IKLEDVKLTYKNGVA 76
           I LEDV L  + G A
Sbjct: 421 IVLEDVDLEIEGGAA 435

[Close]

BLAST of Lcy05g017150 vs. ExPASy Swiss-Prot
Match: P05117 (Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M +V+YPIIIDQNY    + C  Q S ++V +V YE+I GT A +V +KFDCS  FPC G
Sbjct: 348 MQDVKYPIIIDQNYCDRVEPCIQQFSAVQVKNVVYENIKGTSATKVAIKFDCSTNFPCEG 407

Query: 61  IKLEDVKLTYKNG 74
           I +E++ L  ++G
Sbjct: 408 IIMENINLVGESG 420

[Close]

BLAST of Lcy05g017150 vs. ExPASy Swiss-Prot
Match: O22818 (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-13
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M  V+ PIIIDQ+Y  H K CP Q S +KVS+V YEDIHGT   +V +  DCS + PC G
Sbjct: 304 MKMVKNPIIIDQHYCLH-KPCPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTG 363

Query: 61  IKLEDVKLTYKNGVAKCS 79
           I ++DV L   +  A+ S
Sbjct: 364 IVMDDVNLVSVHRPAQAS 380

[Close]

BLAST of Lcy05g017150 vs. ExPASy Swiss-Prot
Match: O23147 (Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-13
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M+NV+ PIIIDQ+Y   +K C  Q S ++V +V Y++I GT A  V +  +CS K+PC G
Sbjct: 342 MENVKNPIIIDQDYCDKDK-CEDQESAVQVKNVVYKNISGTSATDVAITLNCSEKYPCQG 401

Query: 61  IKLEDVKLTYKNGVAKC 78
           I LE+VK+  K G A C
Sbjct: 402 IVLENVKI--KGGTASC 415

[Close]

BLAST of Lcy05g017150 vs. ExPASy TrEMBL
Match: J9WQT5 (PG2 (Fragment) OS=Cucurbita pepo subsp. pepo OX=3664 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.2e-28
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV+ PIIIDQNY PHNKDCPGQAS IKVSDVTY+DIHGT A +  + FDCSPKFPC+G
Sbjct: 83  MTNVKNPIIIDQNYCPHNKDCPGQASGIKVSDVTYQDIHGTTATKFALTFDCSPKFPCVG 142

Query: 61  IKLEDVKLTYKNGVAK 77
           I+LEDVKL+YKNG AK
Sbjct: 143 IRLEDVKLSYKNGAAK 158

[Close]

BLAST of Lcy05g017150 vs. ExPASy TrEMBL
Match: A0A6J1GNK7 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111455565 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.7e-27
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV+ PIIIDQNY P+NKDCPGQAS IKVSDVTY+DI GT A +  M FDCSPKFPC+G
Sbjct: 320 MTNVKNPIIIDQNYCPYNKDCPGQASGIKVSDVTYQDIRGTAATRFAMTFDCSPKFPCVG 379

Query: 61  IKLEDVKLTYKNGVAK 77
           IKLEDVKL+YKNG AK
Sbjct: 380 IKLEDVKLSYKNGAAK 395

[Close]

BLAST of Lcy05g017150 vs. ExPASy TrEMBL
Match: A0A6J1GMA1 (polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111455564 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.7e-27
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV+ PIIIDQNY P+NKDCPGQAS IKVSDVTY+DI GT A +  M FDCSPKFPC+G
Sbjct: 297 MTNVKNPIIIDQNYCPYNKDCPGQASGIKVSDVTYQDIRGTAATRFAMTFDCSPKFPCVG 356

Query: 61  IKLEDVKLTYKNGVAK 77
           IKLEDVKL+YKNG AK
Sbjct: 357 IKLEDVKLSYKNGAAK 372

[Close]

BLAST of Lcy05g017150 vs. ExPASy TrEMBL
Match: A0A6J1I881 (polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111470566 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.0e-27
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV+ PIIIDQNY P+NKDCPGQAS IKVSDVTY+DI GT A +  M FDCSPKFPC+G
Sbjct: 297 MTNVKNPIIIDQNYCPYNKDCPGQASGIKVSDVTYQDIRGTAATRFAMTFDCSPKFPCVG 356

Query: 61  IKLEDVKLTYKNGVAK 77
           I+LEDVKL+YKNG AK
Sbjct: 357 IRLEDVKLSYKNGAAK 372

[Close]

BLAST of Lcy05g017150 vs. ExPASy TrEMBL
Match: A0A1S2YIL9 (polygalacturonase-like OS=Cicer arietinum OX=3827 GN=LOC101509102 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.0e-27
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV+ PI+IDQNY P+NKDCPGQAS IK+SDVTYEDIHGT A QV +KFDCS K+PC G
Sbjct: 302 MVNVQNPIVIDQNYCPNNKDCPGQASGIKISDVTYEDIHGTSATQVAVKFDCSYKYPCSG 361

Query: 61  IKLEDVKLTYKNGVAKCSRN 81
           +KL+DVKLTYKN VA+ S N
Sbjct: 362 LKLKDVKLTYKNQVAEASCN 381

[Close]

BLAST of Lcy05g017150 vs. NCBI nr
Match: XP_023511587.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 6.6e-28
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV+ PIIIDQNY PHNKDCPGQAS IKVSDVTY+DIHGT A +  + FDCSPKFPC+G
Sbjct: 297 MTNVKNPIIIDQNYCPHNKDCPGQASGIKVSDVTYQDIHGTTATKFALTFDCSPKFPCVG 356

Query: 61  IKLEDVKLTYKNGVAK 77
           I+LEDVKL+YKNG AK
Sbjct: 357 IRLEDVKLSYKNGAAK 372

[Close]

BLAST of Lcy05g017150 vs. NCBI nr
Match: AFS18538.1 (PG2, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 6.6e-28
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV+ PIIIDQNY PHNKDCPGQAS IKVSDVTY+DIHGT A +  + FDCSPKFPC+G
Sbjct: 83  MTNVKNPIIIDQNYCPHNKDCPGQASGIKVSDVTYQDIHGTTATKFALTFDCSPKFPCVG 142

Query: 61  IKLEDVKLTYKNGVAK 77
           I+LEDVKL+YKNG AK
Sbjct: 143 IRLEDVKLSYKNGAAK 158

[Close]

BLAST of Lcy05g017150 vs. NCBI nr
Match: XP_023511588.1 (polygalacturonase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-27
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV+ PIIIDQNY PHNKDCPGQAS IKVSDVTY+DI GT A +  M FDCSPKFPC+G
Sbjct: 297 MTNVKNPIIIDQNYCPHNKDCPGQASGIKVSDVTYQDIRGTTATKFAMTFDCSPKFPCVG 356

Query: 61  IKLEDVKLTYKNGVAK 77
           I+LEDVKL+YKNG AK
Sbjct: 357 IRLEDVKLSYKNGAAK 372

[Close]

BLAST of Lcy05g017150 vs. NCBI nr
Match: XP_022953043.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 5.6e-27
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV+ PIIIDQNY P+NKDCPGQAS IKVSDVTY+DI GT A +  M FDCSPKFPC+G
Sbjct: 297 MTNVKNPIIIDQNYCPYNKDCPGQASGIKVSDVTYQDIRGTAATRFAMTFDCSPKFPCVG 356

Query: 61  IKLEDVKLTYKNGVAK 77
           IKLEDVKL+YKNG AK
Sbjct: 357 IKLEDVKLSYKNGAAK 372

[Close]

BLAST of Lcy05g017150 vs. NCBI nr
Match: XP_022953045.1 (polygalacturonase-like [Cucurbita moschata])

HSP 1 Score: 131.0 bits (328), Expect = 5.6e-27
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV+ PIIIDQNY P+NKDCPGQAS IKVSDVTY+DI GT A +  M FDCSPKFPC+G
Sbjct: 320 MTNVKNPIIIDQNYCPYNKDCPGQASGIKVSDVTYQDIRGTAATRFAMTFDCSPKFPCVG 379

Query: 61  IKLEDVKLTYKNGVAK 77
           IKLEDVKL+YKNG AK
Sbjct: 380 IKLEDVKLSYKNGAAK 395

[Close]

BLAST of Lcy05g017150 vs. TAIR 10
Match: AT3G59850.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 8.9e-23
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M+NV+ PI+IDQNY P N++CP Q S IK+SDV + DIHGT A +V +K DCS K PC G
Sbjct: 293 MNNVQNPIVIDQNYCPGNENCPNQVSGIKISDVMFFDIHGTSATEVGVKLDCSSKKPCTG 352

Query: 61  IKLEDVKLTYKNGVAKCSRNCCWLGSTNELF 92
           I+++DVKLTY+N  A  + +C   G +   F
Sbjct: 353 IRIQDVKLTYRNKPA--TTDCSHAGGSEAGF 381

[Close]

BLAST of Lcy05g017150 vs. TAIR 10
Match: AT2G43870.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-21
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M+NV  PIIIDQNY P + DCP Q S IK+SDV + DIHGT A +V +K DCS K PC G
Sbjct: 291 MNNVENPIIIDQNYCP-DHDCPRQVSGIKISDVLFVDIHGTSATEVGVKLDCSSKKPCTG 350

Query: 61  IKLEDVKLTYKN 73
           I+LEDVKLTY+N
Sbjct: 351 IRLEDVKLTYQN 361

[Close]

BLAST of Lcy05g017150 vs. TAIR 10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-18
Identity = 41/78 (52.56%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV+ PIIIDQNY P N+ CP + S +K++ VTY++I GT A Q  MK  CS   PC G
Sbjct: 296 MRNVQNPIIIDQNYCPSNQGCPTEHSGVKITQVTYKNIQGTSATQEAMKLVCSKSNPCTG 355

Query: 61  IKLEDVKLTYKNGVAKCS 79
           I L+D+KLTY  G    S
Sbjct: 356 ITLQDIKLTYNKGTPATS 373

[Close]

BLAST of Lcy05g017150 vs. TAIR 10
Match: AT1G05660.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-18
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV  PIIIDQNY P ++ CP + S +K+S VTY++I GT A Q  MK  CS   PC G
Sbjct: 296 MKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTG 355

Query: 61  IKLEDVKLTYKNGVAKCS 79
           I L+D+KLTY  G    S
Sbjct: 356 ITLQDIKLTYNKGTPATS 373

[Close]

BLAST of Lcy05g017150 vs. TAIR 10
Match: AT1G65570.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 5.1e-18
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 1   MDNVRYPIIIDQNYFPHNKDCPGQASRIKVSDVTYEDIHGTLAKQVVMKFDCSPKFPCMG 60
           M NV YPI+IDQNY P +  CP Q S IK++DV Y  I GT A ++ +K DCS K PC G
Sbjct: 302 MVNVSYPILIDQNYCPGDSSCPSQESGIKINDVIYSGIMGTSATEIAIKMDCSEKVPCTG 361

Query: 61  IKLEDVKLTYKNGVAKCS 79
           I+++ + LT     AK S
Sbjct: 362 IRMQAINLTSYGEAAKTS 379

The following BLAST results are available for this feature:

BLAST of Lcy05g017150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P48979	3.8e-26	62.92	Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1	[more]
P35336	2.1e-16	52.00	Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1	[more]
P05117	1.1e-14	49.32	Polygalacturonase-2 OS=Solanum lycopersicum OX=4081 GN=PG2 PE=1 SV=1	[more]
O22818	1.3e-13	50.00	Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana OX=3702 GN=At2g4386...	[more]
O23147	2.1e-13	48.05	Polygalacturonase ADPG1 OS=Arabidopsis thaliana OX=3702 GN=ADPG1 PE=2 SV=1	[more]

BLAST of Lcy05g017150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
J9WQT5	3.2e-28	77.63	PG2 (Fragment) OS=Cucurbita pepo subsp. pepo OX=3664 PE=2 SV=1	[more]
A0A6J1GNK7	2.7e-27	77.63	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111455565 PE=3 SV=1	[more]
A0A6J1GMA1	2.7e-27	77.63	polygalacturonase-like OS=Cucurbita moschata OX=3662 GN=LOC111455564 PE=3 SV=1	[more]
A0A6J1I881	6.0e-27	76.32	polygalacturonase-like OS=Cucurbita maxima OX=3661 GN=LOC111470566 PE=3 SV=1	[more]
A0A1S2YIL9	6.0e-27	73.75	polygalacturonase-like OS=Cicer arietinum OX=3827 GN=LOC101509102 PE=3 SV=1	[more]

BLAST of Lcy05g017150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511587.1	6.6e-28	77.63	polygalacturonase-like [Cucurbita pepo subsp. pepo]	[more]
AFS18538.1	6.6e-28	77.63	PG2, partial [Cucurbita pepo subsp. pepo]	[more]
XP_023511588.1	2.5e-27	77.63	polygalacturonase-like [Cucurbita pepo subsp. pepo]	[more]
XP_022953043.1	5.6e-27	77.63	polygalacturonase-like [Cucurbita moschata]	[more]
XP_022953045.1	5.6e-27	77.63	polygalacturonase-like [Cucurbita moschata]	[more]

BLAST of Lcy05g017150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G59850.1	8.9e-23	52.75	Pectin lyase-like superfamily protein	[more]
AT2G43870.1	2.9e-21	65.28	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	1.0e-18	52.56	Pectin lyase-like superfamily protein	[more]
AT1G05660.1	1.0e-18	52.56	Pectin lyase-like superfamily protein	[more]
AT1G65570.1	5.1e-18	50.00	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..88 e-value: 3.7E-21 score: 77.5
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 1..78 e-value: 3.3E-18 score: 65.8
None	No IPR available	PANTHER	PTHR31375:SF219	PUTATIVE-RELATED	coord: 1..77
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 1..77
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g017150.1	Lcy05g017150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity