Lcy05g016760 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g016760
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	GTPase IMAP family member 1, putative
Location	Chr05: 24655268 .. 24655750 (+)
RNA-Seq Expression	Lcy05g016760
Synteny	Lcy05g016760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGAATCATTGATGGCATTGGCAAGATCTTGGTCGAAACCCTCGCAAGAACAAGAAACTGGATCAATGGCTTAGTCGAATCCGACCAAGAAACTGATGTAACCGAACATCATCAACACCATTGGCGGGCAGTGACGGCCGTAGAGATGCTAAGGCAGTGGGAGAAAATGATGCTGACATTTTGCTTGGCGTCAGCCATTGCCATAGCCACTGTTTCTGTCCAGATCGAAACCAAGTTGTCTCTAATGTTCAAATTCTTGTCCGCTGCTTTAATGGCTTGCTTTGCTTTCATAGCCTCTGCAAAACTCATTAAGCACCAAAGGGTTTCTCAAATTCTGTATTGTTTTGGTGGGTTTTGGTTTGTCACCTCCTTCTTCATTGCCATTGCCATTCCTTATGCTTTTCACTTCCGAATTCTGACCTTCACCATCTACCTTTTCTTCTTGTCCATCACTTTAATTTGCTATCGTCTCTCCTAA

mRNA sequence

ATGAGAGGAATCATTGATGGCATTGGCAAGATCTTGGTCGAAACCCTCGCAAGAACAAGAAACTGGATCAATGGCTTAGTCGAATCCGACCAAGAAACTGATGTAACCGAACATCATCAACACCATTGGCGGGCAGTGACGGCCGTAGAGATGCTAAGGCAGTGGGAGAAAATGATGCTGACATTTTGCTTGGCGTCAGCCATTGCCATAGCCACTGTTTCTGTCCAGATCGAAACCAAGTTGTCTCTAATGTTCAAATTCTTGTCCGCTGCTTTAATGGCTTGCTTTGCTTTCATAGCCTCTGCAAAACTCATTAAGCACCAAAGGGTTTCTCAAATTCTGTATTGTTTTGGTGGGTTTTGGTTTGTCACCTCCTTCTTCATTGCCATTGCCATTCCTTATGCTTTTCACTTCCGAATTCTGACCTTCACCATCTACCTTTTCTTCTTGTCCATCACTTTAATTTGCTATCGTCTCTCCTAA

Coding sequence (CDS)

ATGAGAGGAATCATTGATGGCATTGGCAAGATCTTGGTCGAAACCCTCGCAAGAACAAGAAACTGGATCAATGGCTTAGTCGAATCCGACCAAGAAACTGATGTAACCGAACATCATCAACACCATTGGCGGGCAGTGACGGCCGTAGAGATGCTAAGGCAGTGGGAGAAAATGATGCTGACATTTTGCTTGGCGTCAGCCATTGCCATAGCCACTGTTTCTGTCCAGATCGAAACCAAGTTGTCTCTAATGTTCAAATTCTTGTCCGCTGCTTTAATGGCTTGCTTTGCTTTCATAGCCTCTGCAAAACTCATTAAGCACCAAAGGGTTTCTCAAATTCTGTATTGTTTTGGTGGGTTTTGGTTTGTCACCTCCTTCTTCATTGCCATTGCCATTCCTTATGCTTTTCACTTCCGAATTCTGACCTTCACCATCTACCTTTTCTTCTTGTCCATCACTTTAATTTGCTATCGTCTCTCCTAA

Protein sequence

MRGIIDGIGKILVETLARTRNWINGLVESDQETDVTEHHQHHWRAVTAVEMLRQWEKMMLTFCLASAIAIATVSVQIETKLSLMFKFLSAALMACFAFIASAKLIKHQRVSQILYCFGGFWFVTSFFIAIAIPYAFHFRILTFTIYLFFLSITLICYRLS

Homology

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BLAST of Lcy05g016760 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 59/120 (49.17%), Postives = 84/120 (70.00%), Query Frame = 0


Query: 41  HHWRAVTAV-EMLRQWEKMMLTFCLASAIAIATVSVQIET--KLSLMFKFLSAALMACFA 100
           H  R +T V EM+ +W++M++  C++SAI IATVSVQIET  +L   F+FLS  ++ CF 
Sbjct: 32  HGGRKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFG 91

Query: 101 FIASAKLIK--HQRVSQILYCFGGFWFVTSFFIAIAIPYAFHFRILTFTIYLFFLSITLI 156
           F+  AK+ K   + VS+ILYC GGF  VT+FFIA AIP+A +F+I+ F +YL F  I ++
Sbjct: 92  FVGFAKMTKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIFML 151

[Close]

BLAST of Lcy05g016760 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.4e-13
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 50  EMLRQWEKMMLTFCLASAIAIATVSVQIETKLSLMFKFLSAALMACFAFIASAKLIK--H 109
           EM+ + ++M++ FCL+SAI IATVSVQ +TKL   F+FLS A++ CF  +  A++I    
Sbjct: 29  EMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFARMISSIF 88

Query: 110 QRVSQILYCFGGFWFVTSFFIAIAIPYAFHFRILTFTIYLFFLSI 153
           + +S+ILYCFGGF   T  FIA AIPY  HF I+   +Y  F  I
Sbjct: 89  KTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFCII 133

[Close]

BLAST of Lcy05g016760 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 44/93 (47.31%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 48  AVEMLRQWEKMMLTFCLASAIAIATVSVQIETKLSLMFKFLSAALMACFAFIASAKLIK- 107
           A EM+ +W+ M++ FC++SAI IATVSV I+T+L   F+ LS A++ CF  +  A++I  
Sbjct: 26  AAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINS 85

Query: 108 -HQRVSQILYCFGGFWFVTSFFIAIAIPYAFHF 139
             + +S+ILYC GG  + +S FIA AIPYA  F
Sbjct: 86  IFETLSKILYCVGGLLYASSCFIATAIPYASSF 118

[Close]

BLAST of Lcy05g016760 vs. ExPASy TrEMBL
Match: A0A7N2R866 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.3e-09
Identity = 43/107 (40.19%), Postives = 67/107 (62.62%), Query Frame = 0


Query: 54  QWEKMMLTFCLASAIAIATVSVQIETKLSLMFKFLSAALMACFAFIASAKLI--KHQRVS 113
           +W ++++ FCLASA+ IA +SVQ+ T+L  +F   S A++  FA +  +K I  K  R +
Sbjct: 81  EWAEIVIAFCLASAVDIAILSVQVHTQLPALFHLFSLAILLAFASVVVSKFINPKFLRAA 140

Query: 114 QILYCFGGFWFVTSFFIAIAIPYAFHFRILTFTIYLFFLSITLICYR 159
           Q+L  FG F+ VT+FFIAI IP+ F+ +  ++ +Y       LIC R
Sbjct: 141 QVLEKFGVFFTVTAFFIAITIPFPFYLKFASWVVYAISALAILICNR 187

[Close]

BLAST of Lcy05g016760 vs. ExPASy TrEMBL
Match: A0A7N2M6M7 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 0


Query: 55  WEKMMLTFCLASAIAIATVSVQIETKLSLMFKFLSAALMACFAFIASAKLIKHQ----RV 114
           W  +M+ FCL++A+ +A++  QIET+LS  F +LS A+   FA    ++ IK++      
Sbjct: 73  WADLMIGFCLSAALEMASLYTQIETQLSATFHWLSLAIGFAFACFFVSQFIKYKSRFLAT 132

Query: 115 SQILYCFGGFWFVTSFFIAIAIPYAFHFRILTFTIYLFFLSITLIC 157
           +Q+L  FG F+ VT+FF+AI IP   +F+  T+TIY   +   +IC
Sbjct: 133 AQVLQKFGEFFAVTAFFMAITIPSPLYFKFATWTIYAISVLTIIIC 178

[Close]

BLAST of Lcy05g016760 vs. NCBI nr
Match: KAG6584385.1 (hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.1 bits (414), Expect = 1.0e-36
Identity = 96/156 (61.54%), Postives = 112/156 (71.79%), Query Frame = 0


Query: 4   IIDGIGKILVETLARTRNWI-------NGLVESDQETDVTEHHQHHWRAVTAVEMLRQWE 63
           + DGI K+  E L+R R +I       NG +   +E    E   + WR V+AVEML QWE
Sbjct: 7   VSDGIVKLFSEALSRARAFIVNANAYANGRLVHSEEAGAAE---YQWRPVSAVEMLMQWE 66

Query: 64  KMMLTFCLASAIAIATVSVQIETKLSLMFKFLSAALMACFAFIASAKLIKHQRVSQILYC 123
            MM+TFC+ +AIAIATVSVQI+TKLS MF+FLS ALM CF F  SAKLIKHQRVS ILY 
Sbjct: 67  NMMVTFCMGTAIAIATVSVQIQTKLSPMFQFLSGALMGCFCFTTSAKLIKHQRVSLILYF 126

Query: 124 FGGFWFVTSFFIAIAIPYAFHFRILTFTIYLFFLSI 153
            GGF FVT+FFIAIAIPYAFHF+ILT  +YL FL I
Sbjct: 127 LGGFCFVTAFFIAIAIPYAFHFQILTLALYLVFLFI 159

[Close]

BLAST of Lcy05g016760 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.1 bits (261), Expect = 5.5e-19
Identity = 64/119 (53.78%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 45  AVTAVEMLRQWEKMMLTFCLASAIAIATVSVQIETKLSLMFKFLSAALMACFAFIASAKL 104
           AV A EM+ +W+ M++ FC++SAIAIATVSVQIE KL  +F FLS  L+ CF F+A  K+
Sbjct: 33  AVAAAEMVEEWKDMIVAFCVSSAIAIATVSVQIEKKLPRVFNFLSLTLLLCFGFVAFGKM 92

Query: 105 IKH--QRVSQILYCFGGFWFVTSFFIAIAIPYAFHFRILTFTIYL-FFLSITLICYRLS 161
            K   +RVS+ILYC GG   VT+ FIA AIPYA +F+I+ F IYL F+L   L+ ++ S
Sbjct: 93  TKSILKRVSRILYCVGGVLGVTALFIASAIPYASYFQIIIFLIYLIFWLMFMLVAHKSS 151

[Close]

BLAST of Lcy05g016760 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-10
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 48  AVEMLRQWEKMMLTFCLASAIAIATVSVQIETKLSLMFKFLSAALMACFAFIASAKLIK- 107
           A EM+ +W+ M++ FC++SAI IATVSV I+T+L   F+ LS A++ CF  +  A++I  
Sbjct: 12  AAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINS 71

Query: 108 -HQRVSQILYCFGGFWFVTSFFIAIAIPY 135
             + +S+ILYC GG  + +S FIA AIPY
Sbjct: 72  IFETLSKILYCVGGLLYASSCFIATAIPY 100

[Close]

BLAST of Lcy05g016760 vs. NCBI nr
Match: KAF3947053.1 (hypothetical protein CMV_026760 [Castanea mollissima])

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-07
Identity = 45/115 (39.13%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 45  AVTAVEML-RQWEKMMLTFCLASAIAIATVSVQIETKLSLMFKFLSAALMACFAFIASAK 104
           AV  VE+  ++W ++ +TFCLASAI IA VSVQ+ ++LS  F  LS  ++  FA    +K
Sbjct: 49  AVGVVEVQHKEWTELTVTFCLASAIDIALVSVQVNSQLSTAFHLLSLTILLAFASFVVSK 108

Query: 105 LIKHQRV--SQILYCFGGFWFVTSFFIAIAIPYAFHFRILTFTIYLFFLSITLIC 157
            IK + +  +Q+L  FG F+ +T+FF+AI IP+  + +  ++ +Y       LIC
Sbjct: 109 FIKFKFLVSAQVLENFGVFFTMTAFFMAITIPFPLYLKFASWAVYTISALAILIC 163

[Close]

BLAST of Lcy05g016760 vs. NCBI nr
Match: KAF3947054.1 (hypothetical protein CMV_026761 [Castanea mollissima])

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-06
Identity = 42/104 (40.38%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 55  WEKMMLTFCLASAIAIATVSVQIETKLSLMFKFLSAALMACFAFIASAKLIKHQRV--SQ 114
           W ++M+ FCLASAI IA VSVQ++ +LS  F  LS A++  FA    ++ IK + +  +Q
Sbjct: 79  WTEIMIGFCLASAIDIALVSVQVQAQLSATFHLLSLAILFAFACFFVSEFIKSKFLVTAQ 138

Query: 115 ILYCFGGFWFVTSFFIAIAIPYAFHFRILTFTIYLFFLSITLIC 157
           +L   G F+ VT+FF+AI IP+  + +  T+ IY   +    IC
Sbjct: 139 VLQKLGIFFTVTAFFMAITIPFPLYHKFATWAIYTISVLAIFIC 182

The following BLAST results are available for this feature:

BLAST of Lcy05g016760 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g016760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQB6	1.1e-15	49.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1	[more]
A0A0A0LCY2	8.4e-13	48.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1	[more]
A0A0A0LSX4	2.7e-11	47.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1	[more]
A0A7N2R866	4.3e-09	40.19	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A7N2M6M7	1.2e-06	38.68	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Lcy05g016760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584385.1	1.0e-36	61.54	hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6572911.1	5.5e-19	53.78	hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652531.1	1.2e-10	47.19	hypothetical protein Csa_013077, partial [Cucumis sativus]	[more]
KAF3947053.1	2.9e-07	39.13	hypothetical protein CMV_026760 [Castanea mollissima]	[more]
KAF3947054.1	4.1e-06	40.38	hypothetical protein CMV_026761 [Castanea mollissima]	[more]

BLAST of Lcy05g016760 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34741:SF2	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 34..156
None	No IPR available	PANTHER	PTHR34741	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 34..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g016760.1	Lcy05g016760.1	mRNA