Lcy05g016730 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g016730
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr05: 24455317 .. 24455678 (+)
RNA-Seq ExpressionLcy05g016730
SyntenyLcy05g016730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAAATCATAAGTGACATTGCCATTTTCTTTCTAAATACCCTCCCTAGAATTACATCATTTTTGCAATCCCAACCCAACGACCCAGAAACAGGAACTCAGCACCACCGCCGGCCACCTTCGCCGCCACCATCTACGACGGTGGAGATGCTAATGCAGTGGGAAAAAATGATGGTAACATTTTGTTTGGCGTCGGCCATTGCCATAGCCACCGTCTTTGTCCAAATAGAAACCAAGTTGTCTCTAATGTTTCGATTCCTTTCGGTTGCGTTAATGGTCTGCTTCAGCTTCACGGCGTCTGCAAAACTCATTAAGCACCAAAGGGTCTCTGAAATTCTGTATTGTTTTGGTGGGTTTGG

mRNA sequence

ATGAGAAAAATCATAAGTGACATTGCCATTTTCTTTCTAAATACCCTCCCTAGAATTACATCATTTTTGCAATCCCAACCCAACGACCCAGAAACAGGAACTCAGCACCACCGCCGGCCACCTTCGCCGCCACCATCTACGACGGTGGAGATGCTAATGCAGTGGGAAAAAATGATGGTAACATTTTGTTTGGCGTCGGCCATTGCCATAGCCACCGTCTTTGTCCAAATAGAAACCAAGTTGTCTCTAATGTTTCGATTCCTTTCGGTTGCGTTAATGGTCTGCTTCAGCTTCACGGCGTCTGCAAAACTCATTAAGCACCAAAGGGTCTCTGAAATTCTGTATTGTTTTGGTGGGTTTGG

Coding sequence (CDS)

ATGAGAAAAATCATAAGTGACATTGCCATTTTCTTTCTAAATACCCTCCCTAGAATTACATCATTTTTGCAATCCCAACCCAACGACCCAGAAACAGGAACTCAGCACCACCGCCGGCCACCTTCGCCGCCACCATCTACGACGGTGGAGATGCTAATGCAGTGGGAAAAAATGATGGTAACATTTTGTTTGGCGTCGGCCATTGCCATAGCCACCGTCTTTGTCCAAATAGAAACCAAGTTGTCTCTAATGTTTCGATTCCTTTCGGTTGCGTTAATGGTCTGCTTCAGCTTCACGGCGTCTGCAAAACTCATTAAGCACCAAAGGGTCTCTGAAATTCTGTATTGTTTTGGTGGGTTTGG

Protein sequence

MRKIISDIAIFFLNTLPRITSFLQSQPNDPETGTQHHRRPPSPPPSTTVEMLMQWEKMMVTFCLASAIAIATVFVQIETKLSLMFRFLSVALMVCFSFTASAKLIKHQRVSEILYCFGGF
Homology
BLAST of Lcy05g016730 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 0

Query: 50  EMLMQWEKMMVTFCLASAIAIATVFVQIET--KLSLMFRFLSVALMVCFSFTASAKLIK- 109
           EM+ +W++M+V  C++SAI IATV VQIET  +L   F+FLS+ +++CF F   AK+ K 
Sbjct: 42  EMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKMTKP 101

Query: 110 -HQRVSEILYCFGGF 121
             + VS+ILYC GGF
Sbjct: 102 IFKTVSKILYCVGGF 116

BLAST of Lcy05g016730 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.6e-08
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 0

Query: 50  EMLMQWEKMMVTFCLASAIAIATVFVQIETKLSLMFRFLSVALMVCFSFTASAKLIK--H 109
           EM+ + ++M++ FCL+SAI IATV VQ +TKL   F+FLS+A+++CF     A++I    
Sbjct: 29  EMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAVLICFLSVGFARMISSIF 88

Query: 110 QRVSEILYCFGGF 121
           + +S+ILYCFGGF
Sbjct: 89  KTLSKILYCFGGF 101

BLAST of Lcy05g016730 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 50  EMLMQWEKMMVTFCLASAIAIATVFVQIETKLSLMFRFLSVALMVCFSFTASAKLIK--H 109
           EM+ +W+ M++ FC++SAI IATV V I+T+L   F+ LS+A+++CF     A++I    
Sbjct: 28  EMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINSIF 87

Query: 110 QRVSEILYCFGG 120
           + +S+ILYC GG
Sbjct: 88  ETLSKILYCVGG 99

BLAST of Lcy05g016730 vs. NCBI nr
Match: KAG6584385.1 (hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 6.4e-20
Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 0

Query: 45  PSTTVEMLMQWEKMMVTFCLASAIAIATVFVQIETKLSLMFRFLSVALMVCFSFTASAKL 104
           P + VEMLMQWE MMVTFC+ +AIAIATV VQI+TKLS MF+FLS ALM CF FT SAKL
Sbjct: 52  PVSAVEMLMQWENMMVTFCMGTAIAIATVSVQIQTKLSPMFQFLSGALMGCFCFTTSAKL 111

Query: 105 IKHQRVSEILYCFGGF 121
           IKHQRVS ILY  GGF
Sbjct: 112 IKHQRVSLILYFLGGF 127

BLAST of Lcy05g016730 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 7.1e-11
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 41  PSPPPSTTVEMLMQWEKMMVTFCLASAIAIATVFVQIETKLSLMFRFLSVALMVCFSFTA 100
           PS       EM+ +W+ M+V FC++SAIAIATV VQIE KL  +F FLS+ L++CF F A
Sbjct: 29  PSEAAVAAAEMVEEWKDMIVAFCVSSAIAIATVSVQIEKKLPRVFNFLSLTLLLCFGFVA 88

Query: 101 SAKLIKH--QRVSEILYCFGG 120
             K+ K   +RVS ILYC GG
Sbjct: 89  FGKMTKSILKRVSRILYCVGG 109

BLAST of Lcy05g016730 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.1e-06
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 50  EMLMQWEKMMVTFCLASAIAIATVFVQIETKLSLMFRFLSVALMVCFSFTASAKLIK--H 109
           EM+ +W+ M++ FC++SAI IATV V I+T+L   F+ LS+A+++CF     A++I    
Sbjct: 14  EMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFVSVVFARMINSIF 73

Query: 110 QRVSEILYCFGG 120
           + +S+ILYC GG
Sbjct: 74  ETLSKILYCVGG 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LQB61.2e-0850.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1[more]
A0A0A0LCY23.6e-0849.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1[more]
A0A0A0LSX41.5e-0644.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6584385.16.4e-2076.32hypothetical protein SDJN03_20317, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572911.17.1e-1153.09hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8652531.13.1e-0644.44hypothetical protein Csa_013077, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..47
NoneNo IPR availablePANTHERPTHR34741:SF2IMAP FAMILY MEMBER 1, PUTATIVE-RELATEDcoord: 26..120
NoneNo IPR availablePANTHERPTHR34741IMAP FAMILY MEMBER 1, PUTATIVE-RELATEDcoord: 26..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g016730.1Lcy05g016730.1mRNA