Lcy05g016610 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g016610
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DDE Tnp4 domain-containing protein
Location	Chr05: 23700222 .. 23700413 (-)
RNA-Seq Expression	Lcy05g016610
Synteny	Lcy05g016610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTCATCAAGAGACACCTTATTTGAAGAATATCAAGTTCCGGACTTAGAAGTGCCTGATGAGGAAAGCATGGCCGGTGGAACTCCAGAATTTCTTGATATGAACTTGAGTCAAGCTTATATAAGTCGAATGAATGATGTAAGGGATGACATTGCCGGTACCATGTGGTTGGATTATTGTAATGCATGA

mRNA sequence

ATGTATTCATCAAGAGACACCTTATTTGAAGAATATCAAGTTCCGGACTTAGAAGTGCCTGATGAGGAAAGCATGGCCGGTGGAACTCCAGAATTTCTTGATATGAACTTGAGTCAAGCTTATATAAGTCGAATGAATGATGTAAGGGATGACATTGCCGGTACCATGTGGTTGGATTATTGTAATGCATGA

Coding sequence (CDS)

ATGTATTCATCAAGAGACACCTTATTTGAAGAATATCAAGTTCCGGACTTAGAAGTGCCTGATGAGGAAAGCATGGCCGGTGGAACTCCAGAATTTCTTGATATGAACTTGAGTCAAGCTTATATAAGTCGAATGAATGATGTAAGGGATGACATTGCCGGTACCATGTGGTTGGATTATTGTAATGCATGA

Protein sequence

MYSSRDTLFEEYQVPDLEVPDEESMAGGTPEFLDMNLSQAYISRMNDVRDDIAGTMWLDYCNA

Homology

[Close]

BLAST of Lcy05g016610 vs. ExPASy TrEMBL
Match: A0A5N5HIZ9 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_017831 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.7e-06
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 1   MYSSRDTLFEEYQVPDLEVPDEESMAGGTPEFLDMNLSQAYISRMNDVRDDIAGTMWLDY 60
           M S  DTLF++++  D++V DEES +G   E  +M+L+   +  MNDVRD IAG+MWLDY
Sbjct: 280 MQSRNDTLFQQFEDNDIDVVDEES-SGANQEDENMHLNDDNV--MNDVRDHIAGSMWLDY 338

Query: 61  CN 63
            N
Sbjct: 340 IN 338

[Close]

BLAST of Lcy05g016610 vs. ExPASy TrEMBL
Match: A0A540K2W4 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_045859 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 1  MYSSRDTLFEEYQVPDLEVPDEESMAGGTPEFLDMNLSQAYISRMNDVRDDIAGTMWLDY 60
          M S  DTLF++++  D++V DEES +G   E  +M+L+   +  MNDVRD IAG+MWLDY
Sbjct: 25 MQSRNDTLFQQFEDNDVDVVDEES-SGANQEGENMHLNDDNV--MNDVRDHIAGSMWLDY 83

Query: 61 CN 63
           N
Sbjct: 85 VN 83

[Close]

BLAST of Lcy05g016610 vs. ExPASy TrEMBL
Match: A0A540LAM1 (DDE Tnp4 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_030948 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1   MYSSRDTLFEEYQVPDLEVPDEESMAGGTPEFLDMNLSQAYISRMNDVRDDIAGTMWLDY 60
           M S  DTLF++++  D++V DEES +G   E  +M+L    +  MNDVRD IAG+MWLDY
Sbjct: 56  MQSRNDTLFQQFEDNDVDVVDEES-SGANQEGENMHLKDDNV--MNDVRDHIAGSMWLDY 114

Query: 61  CN 63
            N
Sbjct: 116 VN 114

[Close]

BLAST of Lcy05g016610 vs. ExPASy TrEMBL
Match: A0A540NTP0 (DDE Tnp4 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_000300 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.5e-05
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 1   MYSSRDTLFEEYQVPDLEVPDEESMAGGTPEFLDMNLSQAYISRMNDVRDDIAGTMWLDY 60
           M S  DTLF++++  D++V DEES +G   E  +M+L+   +  MNDVRD IAG+MWLDY
Sbjct: 171 MQSRNDTLFQQFEDNDVDVIDEES-SGTNQEGENMHLNDDNV--MNDVRDHIAGSMWLDY 229

Query: 61  CN 63
            N
Sbjct: 231 VN 229

[Close]

BLAST of Lcy05g016610 vs. ExPASy TrEMBL
Match: A0A540NQ07 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_001713 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.3e-05
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1   MYSSRDTLFEEYQVPDLEVPDEESMAGGTPEFLDMNLSQAYISRMNDVRDDIAGTMWLDY 60
           M S  DTLF++++  D++V DEE  +G   E  +M+L+   +  MNDVRD IAG+MWLDY
Sbjct: 78  MQSRNDTLFQQFEDNDVDVVDEE-CSGTNQEGKNMHLNDDNV--MNDVRDHIAGSMWLDY 136

Query: 61  CN 63
            N
Sbjct: 138 AN 136

[Close]

BLAST of Lcy05g016610 vs. NCBI nr
Match: KAB2626171.1 (hypothetical protein D8674_017831 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 1   MYSSRDTLFEEYQVPDLEVPDEESMAGGTPEFLDMNLSQAYISRMNDVRDDIAGTMWLDY 60
           M S  DTLF++++  D++V DEES +G   E  +M+L+   +  MNDVRD IAG+MWLDY
Sbjct: 280 MQSRNDTLFQQFEDNDIDVVDEES-SGANQEDENMHLNDDNV--MNDVRDHIAGSMWLDY 338

Query: 61  CN 63
            N
Sbjct: 340 IN 338

[Close]

BLAST of Lcy05g016610 vs. NCBI nr
Match: TQD68608.1 (hypothetical protein C1H46_045859 [Malus baccata])

HSP 1 Score: 58.5 bits (140), Expect = 2.3e-05
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 1  MYSSRDTLFEEYQVPDLEVPDEESMAGGTPEFLDMNLSQAYISRMNDVRDDIAGTMWLDY 60
          M S  DTLF++++  D++V DEES +G   E  +M+L+   +  MNDVRD IAG+MWLDY
Sbjct: 25 MQSRNDTLFQQFEDNDVDVVDEES-SGANQEGENMHLNDDNV--MNDVRDHIAGSMWLDY 83

Query: 61 CN 63
           N
Sbjct: 85 VN 83

[Close]

BLAST of Lcy05g016610 vs. NCBI nr
Match: TQD83507.1 (hypothetical protein C1H46_030948 [Malus baccata])

HSP 1 Score: 58.2 bits (139), Expect = 3.1e-05
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1   MYSSRDTLFEEYQVPDLEVPDEESMAGGTPEFLDMNLSQAYISRMNDVRDDIAGTMWLDY 60
           M S  DTLF++++  D++V DEES +G   E  +M+L    +  MNDVRD IAG+MWLDY
Sbjct: 56  MQSRNDTLFQQFEDNDVDVVDEES-SGANQEGENMHLKDDNV--MNDVRDHIAGSMWLDY 114

Query: 61  CN 63
            N
Sbjct: 116 VN 114

[Close]

BLAST of Lcy05g016610 vs. NCBI nr
Match: XP_018505745.1 (PREDICTED: uncharacterized protein LOC103958625 [Pyrus x bretschneideri])

HSP 1 Score: 57.8 bits (138), Expect = 4.0e-05
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 1   MYSSRDTLFEEYQVPDLEVPDEESMAGGTPEFLDMNLSQAYISRMNDVRDDIAGTMWLDY 60
           M S  DTLF++++  D++V DEES +G   E  +M+L+   +  MNDVRD IAG+MWLDY
Sbjct: 300 MQSRNDTLFQQFEDNDVDVVDEES-SGTNQEGENMHLNDDNV--MNDVRDHIAGSMWLDY 358

Query: 61  CN 63
            N
Sbjct: 360 VN 358

[Close]

BLAST of Lcy05g016610 vs. NCBI nr
Match: TQE14381.1 (hypothetical protein C1H46_000300 [Malus baccata])

HSP 1 Score: 57.4 bits (137), Expect = 5.2e-05
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 1   MYSSRDTLFEEYQVPDLEVPDEESMAGGTPEFLDMNLSQAYISRMNDVRDDIAGTMWLDY 60
           M S  DTLF++++  D++V DEES +G   E  +M+L+   +  MNDVRD IAG+MWLDY
Sbjct: 171 MQSRNDTLFQQFEDNDVDVIDEES-SGTNQEGENMHLNDDNV--MNDVRDHIAGSMWLDY 229

Query: 61  CN 63
            N
Sbjct: 231 VN 229

The following BLAST results are available for this feature:

BLAST of Lcy05g016610 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g016610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N5HIZ9	8.7e-06	50.00	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A540K2W4	1.1e-05	50.00	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_045859 PE=4 SV=1	[more]
A0A540LAM1	1.5e-05	50.00	DDE Tnp4 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_030948 PE...	[more]
A0A540NTP0	2.5e-05	50.00	DDE Tnp4 domain-containing protein OS=Malus baccata OX=106549 GN=C1H46_000300 PE...	[more]
A0A540NQ07	4.3e-05	48.39	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_001713 PE=4 SV=1	[more]

BLAST of Lcy05g016610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB2626171.1	1.8e-05	50.00	hypothetical protein D8674_017831 [Pyrus ussuriensis x Pyrus communis]	[more]
TQD68608.1	2.3e-05	50.00	hypothetical protein C1H46_045859 [Malus baccata]	[more]
TQD83507.1	3.1e-05	50.00	hypothetical protein C1H46_030948 [Malus baccata]	[more]
XP_018505745.1	4.0e-05	50.00	PREDICTED: uncharacterized protein LOC103958625 [Pyrus x bretschneideri]	[more]
TQE14381.1	5.2e-05	50.00	hypothetical protein C1H46_000300 [Malus baccata]	[more]

BLAST of Lcy05g016610 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g016610.1	Lcy05g016610.1	mRNA