Lcy05g016450 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g016450
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	SWIM-type domain-containing protein
Location	Chr05: 22856688 .. 22857798 (+)
RNA-Seq Expression	Lcy05g016450
Synteny	Lcy05g016450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAAACAAGGATGAAAAAGAAAAAGAAAAATGGGTGTCGATGGGAAAGAGAGAATGGGGACTTACTGGTAGTGGCGGTGACGACTTCCCTACGATAACACCGGCGATTTTCTGGCAACCCAAGTAGACCTGAGAAATCGTTCTTTTGTTGAGGAAAAAAGGAGATATATCGAGGGAAAGAGAGGAATGAGAGATGTGGGTGGAGAAAAGAGAGGGAAAGGGACGAGGGGAAAATCGTGAAGTGATGTTTTCCCTCTTCTAATTTTTCTCTCTTTTTCTTTTTTTCTTTAAAATAACACTTATTTAAAATAAAATAAAAAATTGTTAATGACAGTTAAACAATGTCATAGATTTATGACAATGAAAAAATGTCATAAATTTCCGAAAAATAAAAATCTCCGTTTTTTCCCGCCAAAAACGCGCCCCTAGCCATTTATGACATTTTTTTTCTCACTTTCCTTTATTTGGTTTTGTTATAGTGTCATAGAATGTCATTTTTGTAGTAGTGGGAATTACCTATCGCATCCATGCTAGAGGTTTTAAGGATGATGTTACAAAGGTGGTTTCATGATAGAAGGAACGAGGCAGCTTTTCAAGTAACTGATTTTACCAAAAATACGGAAAAACATATAAGAGACCAAATTGCGATGGGTCGTTCGATGCAGGTCAGTACACCCTATTTCTGTATAGTACACTTTGAACACTCGATATTTATATTTTATTTTTTTCTGGTCAATCCAGTGGACAATGTCCAATTTCAGGTAATAGATGGTACTAGTCAACACGATGTTCATTTAACCGCCAGAAGATGCAGTTGTAGGATGTGGGACATTTTGGAGATTCCATGCTCTCATGCTTGTGCCGTTTTGACTTCGAAGCACTTGTCTATTAAGGAGTACATATCAAATTTCTACTTGAATAGTACTCTCTCTTCAATATACAGTGGTTGCAATGAGTCTAGCTGGCATATCCCCGATGACATCAAAAGTATATCAGTTCTCCCTCCAAACGTTAAGCGTTCTGTTGGTAGGCCAAAGAAGATCAGAATCCCCTCACAGATGGAGTTCAAAAGACAGGTTAAATGTGGTCGTTGTGTCAGGATTTGA

mRNA sequence

ATGGGAGAAAACAAGGATGAAAAAGAAAAAGAAAAATGGGTGTCGATGGGAAAGAGAGAATGGGGACTTACTGGTAGTGGCGGTGACGACTTCCCTACGATAACACCGGCGATTTTCTGGCAACCCAAGAACGAGGCAGCTTTTCAAGTAACTGATTTTACCAAAAATACGGAAAAACATATAAGAGACCAAATTGCGATGGGTCGTTCGATGCAGGTAATAGATGGTACTAGTCAACACGATGTTCATTTAACCGCCAGAAGATGCAGTTGTAGGATGTGGGACATTTTGGAGATTCCATGCTCTCATGCTTGTGCCGTTTTGACTTCGAAGCACTTGTCTATTAAGGAGTACATATCAAATTTCTACTTGAATAGTACTCTCTCTTCAATATACAGTGGTTGCAATGAGTCTAGCTGGCATATCCCCGATGACATCAAAAGTATATCAGTTCTCCCTCCAAACGTTAAGCGTTCTGTTGGTAGGCCAAAGAAGATCAGAATCCCCTCACAGATGGAGTTCAAAAGACAGGTTAAATGTGGTCGTTGTGTCAGGATTTGA

Coding sequence (CDS)

ATGGGAGAAAACAAGGATGAAAAAGAAAAAGAAAAATGGGTGTCGATGGGAAAGAGAGAATGGGGACTTACTGGTAGTGGCGGTGACGACTTCCCTACGATAACACCGGCGATTTTCTGGCAACCCAAGAACGAGGCAGCTTTTCAAGTAACTGATTTTACCAAAAATACGGAAAAACATATAAGAGACCAAATTGCGATGGGTCGTTCGATGCAGGTAATAGATGGTACTAGTCAACACGATGTTCATTTAACCGCCAGAAGATGCAGTTGTAGGATGTGGGACATTTTGGAGATTCCATGCTCTCATGCTTGTGCCGTTTTGACTTCGAAGCACTTGTCTATTAAGGAGTACATATCAAATTTCTACTTGAATAGTACTCTCTCTTCAATATACAGTGGTTGCAATGAGTCTAGCTGGCATATCCCCGATGACATCAAAAGTATATCAGTTCTCCCTCCAAACGTTAAGCGTTCTGTTGGTAGGCCAAAGAAGATCAGAATCCCCTCACAGATGGAGTTCAAAAGACAGGTTAAATGTGGTCGTTGTGTCAGGATTTGA

Protein sequence

MGENKDEKEKEKWVSMGKREWGLTGSGGDDFPTITPAIFWQPKNEAAFQVTDFTKNTEKHIRDQIAMGRSMQVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACAVLTSKHLSIKEYISNFYLNSTLSSIYSGCNESSWHIPDDIKSISVLPPNVKRSVGRPKKIRIPSQMEFKRQVKCGRCVRI

Homology

[Close]

BLAST of Lcy05g016450 vs. ExPASy TrEMBL
Match: A0A5D3C2C0 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001990 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.7e-22
Identity = 69/163 (42.33%), Postives = 91/163 (55.83%), Query Frame = 0


Query: 39  FWQPKNEAAFQVTDFTKNTEKHIRDQIAMGRSM----------QVIDGTSQHDVHLTARR 98
           F++ +N+A +QVTDFTK     +R+QI + RSM          QVI+GTSQ+ ++L    
Sbjct: 168 FFERRNDADYQVTDFTKTIVGLLREQIELSRSMKVNQVNNLKYQVINGTSQYVIYLPT-- 227

Query: 99  CSCRMWDILEIPCSHACAVLTSKHLSIKEYISNFYLNSTLSSIYSGC-----NESSWHIP 158
                                      K ++S  YLNSTLSS Y        +   W IP
Sbjct: 228 ---------------------------KSHVSPLYLNSTLSSRYRPVINPLGDHCQWQIP 287

Query: 159 DDIKSISVLPPNVKRSVGRPKKIRIPSQMEFKRQVKCGRCVRI 187
           DDI SI +LPPNVKR+VGRPKK +I S++EFKR+VKCGRC R+
Sbjct: 288 DDIMSIVILPPNVKRAVGRPKKFKILSRIEFKRRVKCGRCGRV 301

[Close]

BLAST of Lcy05g016450 vs. ExPASy TrEMBL
Match: A0A6J1DNQ8 (uncharacterized protein LOC111022347 OS=Momordica charantia OX=3673 GN=LOC111022347 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.8e-20
Identity = 61/152 (40.13%), Postives = 89/152 (58.55%), Query Frame = 0


Query: 39  FWQPKNEAAFQVTDFTKNTEKHIRDQIAMGRSMQVIDGTSQHDVHLTARRCSCRMWDILE 98
           F++ +N+  FQ+T FTK+ E  + +QI+  R+M+V      +D++               
Sbjct: 439 FYKRQNDVDFQITKFTKSAESKLSEQISACRTMKVY--AVNNDIY--------------- 498

Query: 99  IPCSHACAVLTSKHLSIKEYISNFYLNSTLSSIYSGC-----NESSWHIPDDIKSISVLP 158
                       KHL  K Y+S++Y N+ LSS YSG      ++SSW+IP+D+K I +L 
Sbjct: 499 -----------QKHLPKKGYVSSYYSNNYLSSTYSGSIHPLGHQSSWNIPEDVKIIKMLL 558

Query: 159 PNVKRSVGRPKKIRIPSQMEFKRQVKCGRCVR 186
           PNVKR  GRPKK+RIPS +EFK++VKC RC R
Sbjct: 559 PNVKRPAGRPKKLRIPSALEFKKRVKCSRCGR 562

[Close]

BLAST of Lcy05g016450 vs. ExPASy TrEMBL
Match: A0A2P5CAJ9 (Zinc finger, PMZ-type OS=Trema orientale OX=63057 GN=TorRG33x02_292030 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-18
Identity = 58/159 (36.48%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 40  WQPKNEAAFQVTDFTKNTEKHIRDQIAMGRSMQV----------IDGTSQHDVHLTARRC 99
           W+ K+EA    T       K +         M+V          I+GT+  +V+L  + C
Sbjct: 37  WKHKSEALALGTKLATKPNKILTQNYVESTRMKVQQASEIIFKAIEGTNSFEVNLEEKTC 96

Query: 100 SCRMWDILEIPCSHACAVLTSKHLSIKEYISNFYLNSTLSSIYSGC-----NESSWHIPD 159
           SC  + + E+PCSHA AV   KHLS  +Y S +Y   T+ + Y G      N   W IP+
Sbjct: 97  SCNRFQMDELPCSHAMAVFAKKHLSSYDYCSKYYKKETMLATYEGTVHPVGNPKEWTIPN 156

Query: 160 DIKSISVLPPNVKRSVGRPKKIRIPSQMEFKRQVKCGRC 184
            I  I +  P  KR  GRPKK RIPS  E K + +CGRC
Sbjct: 157 SISEIKLKTPKGKRKAGRPKKKRIPSAGEPKAKTRCGRC 195

[Close]

BLAST of Lcy05g016450 vs. ExPASy TrEMBL
Match: A0A5D3C7L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00780 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.9e-18
Identity = 52/119 (43.70%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 72  QVIDGTSQHDVHLTARRCSCRMWDILEIPCSHACAVLTSKHLSIKEYISNFYLNSTLSSI 131
           QV +G  Q  V L    CSCR+WD+ EIPC+HA  VL   +L    Y+S FY   TLS  
Sbjct: 199 QVTNGNQQFIVKLNVECCSCRVWDVEEIPCAHALVVLRMLNLDTYSYVSEFYYRETLSET 258

Query: 132 YSGC-----NESSWHIPDDIKSISVLPPNVKRSVGRPKKIRIPSQMEFKRQVKCGRCVR 186
           Y+GC     +   W + D +  + +LPP  KR  GRP K RIPS  EF    KC  C R
Sbjct: 259 YNGCIQPVGSHFDWRVVDSV--MKILPPVFKRQAGRPGKQRIPSVEEFNSSTKCSNCNR 315

[Close]

BLAST of Lcy05g016450 vs. ExPASy TrEMBL
Match: A0A6J1C328 (uncharacterized protein LOC111006994 OS=Momordica charantia OX=3673 GN=LOC111006994 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 57/135 (42.22%), Postives = 80/135 (59.26%), Query Frame = 0


Query: 39  FWQPKNEAAFQVTDFTKNTEKHIRDQIAMGRSMQVIDGTSQHDVHLTARRCSCRMWDILE 98
           F++ KN A FQ+T+FTK+ EK +R+QI+ GR+M V    +                DI +
Sbjct: 503 FYERKNHADFQITEFTKSVEKKLREQISDGRTMHVYAVNN----------------DIYQ 562

Query: 99  IPCSHACAVLTSKHLSIKEYISNFYLNSTLSSIYSGC-----NESSWHIPDDIKSISVLP 158
           +  +H       KHL  K Y+S +Y N+ L S YSG      ++SSW+IP+D+K I +LP
Sbjct: 563 VIDNHR---QVEKHLPTKGYVSLYYSNNYLRSTYSGSIHPLGHQSSWNIPEDVKIIKMLP 618

Query: 159 PNVKRSVGRPKKIRI 169
           PNVKR  GRPKK+RI
Sbjct: 623 PNVKRPAGRPKKLRI 618

[Close]

BLAST of Lcy05g016450 vs. NCBI nr
Match: KAA0051992.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK04566.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-21
Identity = 69/163 (42.33%), Postives = 91/163 (55.83%), Query Frame = 0


Query: 39  FWQPKNEAAFQVTDFTKNTEKHIRDQIAMGRSM----------QVIDGTSQHDVHLTARR 98
           F++ +N+A +QVTDFTK     +R+QI + RSM          QVI+GTSQ+ ++L    
Sbjct: 168 FFERRNDADYQVTDFTKTIVGLLREQIELSRSMKVNQVNNLKYQVINGTSQYVIYLPT-- 227

Query: 99  CSCRMWDILEIPCSHACAVLTSKHLSIKEYISNFYLNSTLSSIYSGC-----NESSWHIP 158
                                      K ++S  YLNSTLSS Y        +   W IP
Sbjct: 228 ---------------------------KSHVSPLYLNSTLSSRYRPVINPLGDHCQWQIP 287

Query: 159 DDIKSISVLPPNVKRSVGRPKKIRIPSQMEFKRQVKCGRCVRI 187
           DDI SI +LPPNVKR+VGRPKK +I S++EFKR+VKCGRC R+
Sbjct: 288 DDIMSIVILPPNVKRAVGRPKKFKILSRIEFKRRVKCGRCGRV 301

[Close]

BLAST of Lcy05g016450 vs. NCBI nr
Match: XP_022155207.1 (uncharacterized protein LOC111022347 [Momordica charantia])

HSP 1 Score: 108.6 bits (270), Expect = 5.8e-20
Identity = 61/152 (40.13%), Postives = 89/152 (58.55%), Query Frame = 0


Query: 39  FWQPKNEAAFQVTDFTKNTEKHIRDQIAMGRSMQVIDGTSQHDVHLTARRCSCRMWDILE 98
           F++ +N+  FQ+T FTK+ E  + +QI+  R+M+V      +D++               
Sbjct: 439 FYKRQNDVDFQITKFTKSAESKLSEQISACRTMKVY--AVNNDIY--------------- 498

Query: 99  IPCSHACAVLTSKHLSIKEYISNFYLNSTLSSIYSGC-----NESSWHIPDDIKSISVLP 158
                       KHL  K Y+S++Y N+ LSS YSG      ++SSW+IP+D+K I +L 
Sbjct: 499 -----------QKHLPKKGYVSSYYSNNYLSSTYSGSIHPLGHQSSWNIPEDVKIIKMLL 558

Query: 159 PNVKRSVGRPKKIRIPSQMEFKRQVKCGRCVR 186
           PNVKR  GRPKK+RIPS +EFK++VKC RC R
Sbjct: 559 PNVKRPAGRPKKLRIPSALEFKKRVKCSRCGR 562

[Close]

BLAST of Lcy05g016450 vs. NCBI nr
Match: XP_030483642.1 (uncharacterized protein LOC115700217 [Cannabis sativa])

HSP 1 Score: 105.1 bits (261), Expect = 6.4e-19
Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 0


Query: 39  FWQPKNEAAFQVTDFTKNTEKHIRDQIAMGRS----------MQVIDGTSQHDVHLTARR 98
           +W+ KN A    T      EK ++ Q  MG             +V D TS + V+L  + 
Sbjct: 115 YWENKNRALKTDTTLANIPEKALKKQREMGLKYKVETANLLVYKVHDYTSSYIVNLENKT 174

Query: 99  CSCRMWDILEIPCSHACAVLTSKHLSIKEYISNFYLNSTLSSIYSGC-----NESSWHIP 158
           C+C+ +D  E+PCSHA AVL  ++ S  +Y S +Y      S Y          +SW+IP
Sbjct: 175 CTCQKFDYDEMPCSHAMAVLAKRNFSCYKYCSYYYTKEAFMSTYEDSILPLGEATSWNIP 234

Query: 159 DDIKSISVLPPNVKRSVGRPKKIRIPSQMEFKRQVKCGRC 184
           +D+K+I+V PP  KR  GRPKK R    M+ K +VKCG+C
Sbjct: 235 EDVKNITVHPPKYKRPAGRPKKDRYKGAMDTKTKVKCGKC 274

[Close]

BLAST of Lcy05g016450 vs. NCBI nr
Match: XP_030497480.1 (uncharacterized protein LOC115713133 [Cannabis sativa])

HSP 1 Score: 105.1 bits (261), Expect = 6.4e-19
Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 0


Query: 39  FWQPKNEAAFQVTDFTKNTEKHIRDQIAMGRS----------MQVIDGTSQHDVHLTARR 98
           +W+ KN A    T      EK ++ Q  MG             +V D TS + V+L  + 
Sbjct: 332 YWENKNRALKTDTTLANIPEKALKKQREMGLKYKVETANLLVYKVHDYTSSYIVNLENKT 391

Query: 99  CSCRMWDILEIPCSHACAVLTSKHLSIKEYISNFYLNSTLSSIYSGC-----NESSWHIP 158
           C+C+ +D  E+PCSHA AVL  ++ S  +Y S +Y      S Y          +SW+IP
Sbjct: 392 CTCQKFDYDEMPCSHAMAVLAKRNFSCYKYCSYYYTKEAFMSTYEDSILPLGEATSWNIP 451

Query: 159 DDIKSISVLPPNVKRSVGRPKKIRIPSQMEFKRQVKCGRC 184
           +D+K+I+V PP  KR  GRPKK R    M+ K +VKCG+C
Sbjct: 452 EDVKNITVHPPKYKRPAGRPKKDRYKGAMDTKTKVKCGKC 491

[Close]

BLAST of Lcy05g016450 vs. NCBI nr
Match: XP_030487349.1 (uncharacterized protein LOC115704274 [Cannabis sativa])

HSP 1 Score: 105.1 bits (261), Expect = 6.4e-19
Identity = 59/160 (36.88%), Postives = 84/160 (52.50%), Query Frame = 0


Query: 39  FWQPKNEAAFQVTDFTKNTEKHIRDQIAMGRS----------MQVIDGTSQHDVHLTARR 98
           +W+ KN A    T      EK ++ Q  MG             +V D TS + V+L  + 
Sbjct: 192 YWENKNRALKTDTTLANIPEKALKKQREMGLKYKVETANLLVYKVHDYTSSYIVNLENKT 251

Query: 99  CSCRMWDILEIPCSHACAVLTSKHLSIKEYISNFYLNSTLSSIYSGC-----NESSWHIP 158
           C+C+ +D  E+PCSHA AVL  ++ S  +Y S +Y      S Y          +SW+IP
Sbjct: 252 CTCQKFDYDEMPCSHAMAVLAKRNFSCYKYCSYYYTKEAFMSTYEDSILPLGEATSWNIP 311

Query: 159 DDIKSISVLPPNVKRSVGRPKKIRIPSQMEFKRQVKCGRC 184
           +D+K+I+V PP  KR  GRPKK R    M+ K +VKCG+C
Sbjct: 312 EDVKNITVHPPKYKRPAGRPKKDRYKGAMDTKTKVKCGKC 351

The following BLAST results are available for this feature:

BLAST of Lcy05g016450 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g016450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C2C0	6.7e-22	42.33	Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DNQ8	2.8e-20	40.13	uncharacterized protein LOC111022347 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A2P5CAJ9	2.0e-18	36.48	Zinc finger, PMZ-type OS=Trema orientale OX=63057 GN=TorRG33x02_292030 PE=4 SV=1	[more]
A0A5D3C7L7	5.9e-18	43.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1C328	1.7e-17	42.22	uncharacterized protein LOC111006994 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of Lcy05g016450 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051992.1	1.4e-21	42.33	protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK04566.1 prot...	[more]
XP_022155207.1	5.8e-20	40.13	uncharacterized protein LOC111022347 [Momordica charantia]	[more]
XP_030483642.1	6.4e-19	36.88	uncharacterized protein LOC115700217 [Cannabis sativa]	[more]
XP_030497480.1	6.4e-19	36.88	uncharacterized protein LOC115713133 [Cannabis sativa]	[more]
XP_030487349.1	6.4e-19	36.88	uncharacterized protein LOC115704274 [Cannabis sativa]	[more]

BLAST of Lcy05g016450 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006564	Zinc finger, PMZ-type	SMART	SM00575	26again6	coord: 87..114 e-value: 5.2E-7 score: 39.3
IPR007527	Zinc finger, SWIM-type	PFAM	PF04434	SWIM	coord: 77..111 e-value: 1.0E-8 score: 34.6
IPR007527	Zinc finger, SWIM-type	PROSITE	PS50966	ZF_SWIM	coord: 80..112 score: 9.692986

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g016450.1	Lcy05g016450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding