Lcy05g016420 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g016420
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like
Location	Chr05: 22777631 .. 22778622 (+)
RNA-Seq Expression	Lcy05g016420
Synteny	Lcy05g016420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTGCCTTCGCCCTCAACAGTTACAACTCCACCACCACCACCACCAGCTCCACCTCCGACAGCCACCACCACCACCACCTCCAGTACCCTCTCTTGGTTCCCCCGCCACCATCACCACCGCCAGCTGCACTCAGCAGGTACTTAAACATCCTTTCTTAATTTCTCTATGCCTTTGTTTCTTGTTTTCATATTTCAACAAACTTAAGCGCTTCCTTCATTCTGTATAACTGCTTCTCTTTTTCTTTTTTTAATTCTTCATAAAGGTCGACAAAATCATACACCAAGTTTTTAAACACGAAAATCTAATTGTCAGATCTCAGTTTTGTTTAAGAAATTGAATATATATGTTATTTTGAAAACCTATTTTCAACAAAACATTGATTTTTTTTAAATAAAAAATAAAATTGAAGAGAAGAAAAAACAGTTAATTCATCATCAAATATATTCTTGTTTTTTGTTTTTCATTTCCAACCAGAAAATAAAAAGGCAACAAACAATTAGTGAAAGAAAATCATTAAATAAGAGTGAAACAAAATGTAGCCAGGACTTGTACTTTCTTGGAAATAAATTACAGAATATATTTAAAATAATTTTGAAGAAATAGGGAAATAAGAAATACGAATATGTTAGCAATAATTGGCATATAATATAAGTTGTTGTAACTCTATAAAACAGGTACGAGTCACAGAAGCGGCGAGACTGGAACACGTTCGGGCAGTGCCTAAAGAACCACCGCCCTCCACTAACACTGTCCCGGTGCAGCGGGGCTCATATTCTCGAGTTCCTCTGCTACCTGGACCAATTCGGGAAGACAAAGGTCCACACCTCCTGCTGCCCGTCCTTCGGCCACCCACACCCCCTGCCCCCTGCCCCTGCCCGCTCTGGCAGGCCTGGGGCAGCCTCGATGCCCTCATCGACCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCAAATTCGAAACTGA

mRNA sequence

ATGGAAGCTGCCTTCGCCCTCAACAGTTACAACTCCACCACCACCACCACCAGCTCCACCTCCGACAGCCACCACCACCACCACCTCCAGTACCCTCTCTTGGTTCCCCCGCCACCATCACCACCGCCAGCTGCACTCAGCAGGTACGAGTCACAGAAGCGGCGAGACTGGAACACGTTCGGGCAGTGCCTAAAGAACCACCGCCCTCCACTAACACTGTCCCGACAAAGGTCCACACCTCCTGCTGCCCGTCCTTCGGCCACCCACACCCCCTGCCCCCTGCCCCTGCCCGCTCTGGCAGGCCTGGGGCAGCCTCGATGCCCTCATCGACCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCAAATTCGAAACTGA

Coding sequence (CDS)

ATGGAAGCTGCCTTCGCCCTCAACAGTTACAACTCCACCACCACCACCACCAGCTCCACCTCCGACAGCCACCACCACCACCACCTCCAGTACCCTCTCTTGGTTCCCCCGCCACCATCACCACCGCCAGCTGCACTCAGCAGGTACGAGTCACAGAAGCGGCGAGACTGGAACACGTTCGGGCAGTGCCTAAAGAACCACCGCCCTCCACTAACACTGTCCCGACAAAGGTCCACACCTCCTGCTGCCCGTCCTTCGGCCACCCACACCCCCTGCCCCCTGCCCCTGCCCGCTCTGGCAGGCCTGGGGCAGCCTCGATGCCCTCATCGACCGCCTCCGCGCCGCCTTCGAGGAGAACGGCGGCCACCCCGAGACCAACCCCTTCAAATTCGAAACTGA

Protein sequence

MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSRQRSTPPAARPSATHTPCPLPLPALAGLGQPRCPHRPPPRRLRGERRPPRDQPLQIRN

Homology

[Close]

BLAST of Lcy05g016420 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 37  PPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR 76
           P PS    +LSRYESQKRRDWNTFGQ L+NHRPPL+LSR
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSR 107

[Close]

BLAST of Lcy05g016420 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 37  PPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR 76
           P PS    +LSRYESQKRRDWNTFGQ L+NHRPPL+LSR
Sbjct: 69  PSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSR 107

[Close]

BLAST of Lcy05g016420 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.9e-10
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 42 PPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR 76
          PPA LSRYESQKRRDWNTF Q L+NHRPPLTL+R
Sbjct: 25 PPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLAR 58

[Close]

BLAST of Lcy05g016420 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.9e-10
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 42 PPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR 76
          PPA LSRYESQKRRDWNTF Q L+NHRPPLTL+R
Sbjct: 25 PPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLAR 58

[Close]

BLAST of Lcy05g016420 vs. ExPASy Swiss-Prot
Match: Q6ATW6 (Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 9.0e-10
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 32 PLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR 76
          P+   PP   P   LSRYESQKRRDWNTF Q LKNHRPPLTL+R
Sbjct: 14 PVAQAPPAMQPMQQLSRYESQKRRDWNTFLQYLKNHRPPLTLAR 57

[Close]

BLAST of Lcy05g016420 vs. ExPASy TrEMBL
Match: A0A6J1IPW9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=LOC111478381 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.3e-23
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1  MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTF 60
          ME+A A+NSY+S +TTT+STSD+HHH    YPLL P PPSPPP ALSRYESQKRRDWNTF
Sbjct: 4  MESASAVNSYSSASTTTTSTSDNHHH----YPLLEPAPPSPPPPALSRYESQKRRDWNTF 63

Query: 61 GQCLKNHRPPLTLSR 76
          GQ LKNHRPPLTLSR
Sbjct: 64 GQYLKNHRPPLTLSR 74

[Close]

BLAST of Lcy05g016420 vs. ExPASy TrEMBL
Match: A0A6J1ED05 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN=LOC111433058 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 12 STTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPL 71
          ST+TTT+STSD +HHHHLQYPLL P PPSPPP ALSRYESQKRRDWNTFGQ LKNHRPPL
Sbjct: 8  STSTTTTSTSD-NHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQYLKNHRPPL 67

Query: 72 TLSR 76
          TLSR
Sbjct: 68 TLSR 70

[Close]

BLAST of Lcy05g016420 vs. ExPASy TrEMBL
Match: A0A5A7UB86 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009900 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 52/76 (68.42%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MEAA-FALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNT 60
          MEAA  A+ SY S +TT+         +HL YPLL+P PPSPP  ALSRYESQKRRDWNT
Sbjct: 4  MEAASSAVTSYTSASTTSD--------NHLHYPLLLPAPPSPPTPALSRYESQKRRDWNT 63

Query: 61 FGQCLKNHRPPLTLSR 76
          FGQ LKNHRPPLTLSR
Sbjct: 64 FGQYLKNHRPPLTLSR 71

[Close]

BLAST of Lcy05g016420 vs. ExPASy TrEMBL
Match: A0A0A0KPA1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526250 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 0


Query: 12 STTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPL 71
          +T T+ S+TSD+H H    YPLL+P PPSPP  ALSRYESQKRRDWNTFGQ LKNHRPPL
Sbjct: 13 TTYTSASTTSDNHPH----YPLLLPAPPSPPTPALSRYESQKRRDWNTFGQYLKNHRPPL 72

Query: 72 TLSR 76
          TLSR
Sbjct: 73 TLSR 72

[Close]

BLAST of Lcy05g016420 vs. ExPASy TrEMBL
Match: A0A1S3AZK8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC103484288 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 52/76 (68.42%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MEAA-FALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNT 60
          MEAA  A+ SY S +TT+         +HL YPLL+P PPSPP  ALSRYESQKRRDWNT
Sbjct: 4  MEAASSAVTSYTSASTTSD--------NHLHYPLLLPAPPSPPTPALSRYESQKRRDWNT 63

Query: 61 FGQCLKNHRPPLTLSR 76
          FGQ LKNHRPPLTLSR
Sbjct: 64 FGQYLKNHRPPLTLSR 71

[Close]

BLAST of Lcy05g016420 vs. NCBI nr
Match: XP_023544575.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 60/75 (80.00%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1  MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTF 60
          ME+A A+NSY S +TTT+STSD+HHH H  YPLL P PPSPPP ALSRYESQKRRDWNTF
Sbjct: 4  MESASAVNSYTSASTTTTSTSDNHHHLH--YPLLEPAPPSPPPPALSRYESQKRRDWNTF 63

Query: 61 GQCLKNHRPPLTLSR 76
          GQ LKNHRPPLTLSR
Sbjct: 64 GQYLKNHRPPLTLSR 76

[Close]

BLAST of Lcy05g016420 vs. NCBI nr
Match: XP_022978370.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima])

HSP 1 Score: 117.9 bits (294), Expect = 6.8e-23
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 1  MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTF 60
          ME+A A+NSY+S +TTT+STSD+HHH    YPLL P PPSPPP ALSRYESQKRRDWNTF
Sbjct: 4  MESASAVNSYSSASTTTTSTSDNHHH----YPLLEPAPPSPPPPALSRYESQKRRDWNTF 63

Query: 61 GQCLKNHRPPLTLSR 76
          GQ LKNHRPPLTLSR
Sbjct: 64 GQYLKNHRPPLTLSR 74

[Close]

BLAST of Lcy05g016420 vs. NCBI nr
Match: KAG6581495.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034783.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-22
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 12 STTTTTSSTSDS--HHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRP 71
          ST+TTT+STSD+  HHHHHLQYPLL P PPSPPP ALSRYESQKRRDWNTFGQ LKNHRP
Sbjct: 8  STSTTTTSTSDNHHHHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQYLKNHRP 67

Query: 72 PLTLSR 76
          PLTLSR
Sbjct: 68 PLTLSR 73

[Close]

BLAST of Lcy05g016420 vs. NCBI nr
Match: XP_038881876.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida])

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-22
Identity = 59/75 (78.67%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1  MEAAFALNSYNSTTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTF 60
          M+AA A+NSY S +TT   TS+S +HHH QYPLLVP PPSPPP ALSRYESQKRRDWNTF
Sbjct: 4  MQAASAVNSYTSASTT---TSNSDNHHHRQYPLLVPAPPSPPPPALSRYESQKRRDWNTF 63

Query: 61 GQCLKNHRPPLTLSR 76
          GQ LKNHRPPLTLSR
Sbjct: 64 GQYLKNHRPPLTLSR 75

[Close]

BLAST of Lcy05g016420 vs. NCBI nr
Match: XP_022925731.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata])

HSP 1 Score: 114.4 bits (285), Expect = 7.5e-22
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 12 STTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPL 71
          ST+TTT+STSD +HHHHLQYPLL P PPSPPP ALSRYESQKRRDWNTFGQ LKNHRPPL
Sbjct: 8  STSTTTTSTSD-NHHHHLQYPLLEPAPPSPPPPALSRYESQKRRDWNTFGQYLKNHRPPL 67

Query: 72 TLSR 76
          TLSR
Sbjct: 68 TLSR 70

[Close]

BLAST of Lcy05g016420 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-10
Identity = 29/36 (80.56%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 40 SPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR 76
          S PPA  SRYESQKRRDWNTF Q LKNH+PPL LSR
Sbjct: 23 SSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSR 58

[Close]

BLAST of Lcy05g016420 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-10
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 40 SPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLSR 76
          S P A  SRYE+QKRRDWNTFGQ L+NHRPPL+LSR
Sbjct: 46 SSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSR 81

[Close]

BLAST of Lcy05g016420 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-09
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 12 STTTTTSSTSDSHHHHHLQYPLLVPPPPSPPPAALSRYESQKRRDWNTFGQCLKNHRPPL 71
          +TTTTTSS+S S                      LSRYE+QKRRDWNTFGQ L+NHRPPL
Sbjct: 25 ATTTTTSSSSSS-------------SSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPL 75

Query: 72 TLSR 76
          +LSR
Sbjct: 85 SLSR 75

[Close]

BLAST of Lcy05g016420 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-09
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 40 SPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLS 75
          S PP   SRYESQKRRDWNTFGQ LKN RPP+ +S
Sbjct: 17 SEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMS 51

[Close]

BLAST of Lcy05g016420 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-09
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 40 SPPPAALSRYESQKRRDWNTFGQCLKNHRPPLTLS 75
          S PP   SRYESQKRRDWNTFGQ LKN RPP+ +S
Sbjct: 17 SEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMS 51

The following BLAST results are available for this feature:

BLAST of Lcy05g016420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2XAV5	4.0e-10	76.92	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	4.0e-10	76.92	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
A2XED8	6.9e-10	85.29	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	6.9e-10	85.29	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q6ATW6	9.0e-10	70.45	Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1	[more]

BLAST of Lcy05g016420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IPW9	3.3e-23	78.67	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ED05	3.7e-22	87.50	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7UB86	1.8e-16	68.42	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A0A0KPA1	1.8e-16	75.00	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526250 PE=3 S...	[more]
A0A1S3AZK8	1.8e-16	68.42	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Lcy05g016420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544575.1	1.8e-23	80.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022978370.1	6.8e-23	78.67	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita maxima]	[more]
KAG6581495.1	1.2e-22	86.36	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
XP_038881876.1	1.2e-22	78.67	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Benincasa hispida]	[more]
XP_022925731.1	7.5e-22	87.50	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Cucurbita moschata]	[more]

BLAST of Lcy05g016420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07090.1	2.4e-10	80.56	Protein of unknown function (DUF640)	[more]
AT2G31160.1	3.2e-10	77.78	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.6e-09	54.69	Protein of unknown function (DUF640)	[more]
AT2G42610.1	2.7e-09	74.29	Protein of unknown function (DUF640)	[more]
AT2G42610.2	2.7e-09	74.29	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 41..77 e-value: 1.4E-11 score: 44.6
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 48..75 score: 13.141994
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..132
None	No IPR available	PANTHER	PTHR31165:SF65	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-LIKE	coord: 2..75
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 2..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g016420.1	Lcy05g016420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus