Lcy05g016360 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g016360
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description60S ribosomal protein L31
LocationChr05: 22514412 .. 22514693 (+)
RNA-Seq ExpressionLcy05g016360
SyntenyLcy05g016360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGATAAATCAACTAAGGCAAGAAAAAGCGAGGTCGTCACTAGAGAGTACACTGTCAATCTCCGCAAATGCTTGCATGGATGCACATTCAAGAAGAAGGCACCAAAGGCTATTAAAAAACTCAGAAAGTTTGCTCAGAATGCTATGGGTACTATTGATGTTAGAGTAGACATGAAACACTTAACAAGCATATATGGAATCATGGAATTAGGAGCGTGCCAAGGAGAGTCCGTGTCCACATTGAGTAATTGTCCGCAGAGATACCTACAGAGGGATTGA

mRNA sequence

ATGGCAGATAAATCAACTAAGGCAAGAAAAAGCGAGGTCGTCACTAGAGAGTACACTGTCAATCTCCGCAAATGCTTGCATGGATGCACATTCAAGAAGAAGGCACCAAAGGCTATTAAAAAACTCAGAAAGTTTGCTCAGAATGCTATGGGTACTATTGATGTTAGAGTAGACATGAAACACTTAACAAGCATATATGGAATCATGGAATTAGGAGCGTGCCAAGGAGAGTCCGTGTCCACATTGAGTAATTGTCCGCAGAGATACCTACAGAGGGATTGA

Coding sequence (CDS)

ATGGCAGATAAATCAACTAAGGCAAGAAAAAGCGAGGTCGTCACTAGAGAGTACACTGTCAATCTCCGCAAATGCTTGCATGGATGCACATTCAAGAAGAAGGCACCAAAGGCTATTAAAAAACTCAGAAAGTTTGCTCAGAATGCTATGGGTACTATTGATGTTAGAGTAGACATGAAACACTTAACAAGCATATATGGAATCATGGAATTAGGAGCGTGCCAAGGAGAGTCCGTGTCCACATTGAGTAATTGTCCGCAGAGATACCTACAGAGGGATTGA

Protein sequence

MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMKHLTSIYGIMELGACQGESVSTLSNCPQRYLQRD
Homology
[Close]
BLAST of Lcy05g016360 vs. ExPASy Swiss-Prot
Match: Q9M573 (60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.8e-20
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 1  MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 60
          MADK +K RK EVV+REYT+NL K LHGCTFKKKAPKAIK++RKFAQ AMGT DVRVD+K
Sbjct: 1  MADKGSKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

[Close]
BLAST of Lcy05g016360 vs. ExPASy Swiss-Prot
Match: Q9MAV7 (60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.2e-18
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 0 

Query: 4  KSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 61
          + TK RK EVVTREYT+NL K LHGCTFKKKAP AIK++RKFAQ AMGT DVRVD+K
Sbjct: 3  EKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVK 59

[Close]
BLAST of Lcy05g016360 vs. ExPASy Swiss-Prot
Match: P46290 (60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-17
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 1  MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 60
          M+DK TK RK EVVTREYT+NL K LH CTFKKKAP AIK++RKFAQ AMGT DVRVD+K
Sbjct: 1  MSDK-TKGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVK 59

[Close]
BLAST of Lcy05g016360 vs. ExPASy Swiss-Prot
Match: P51420 (60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2)

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-16
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 7  KARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 61
          K RK EV+TREYT+NL + LH CTFKKKAPKAIK++RKFA+ AMGT DVRVD+K
Sbjct: 5  KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVK 58

[Close]
BLAST of Lcy05g016360 vs. ExPASy Swiss-Prot
Match: O65071 (60S ribosomal protein L31 OS=Picea mariana OX=3335 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.9e-16
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = 0 

Query: 7  KARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 61
          K+R++EV TREYT+NL + LHGCTFKK APKA+K++RKFAQ AMGT DVR+D+K
Sbjct: 6  KSRRNEVATREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVK 59

[Close]
BLAST of Lcy05g016360 vs. ExPASy TrEMBL
Match: A0A6J1DGM1 (60S ribosomal protein L31 OS=Momordica charantia OX=3673 GN=LOC111020269 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.7e-19
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 1  MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 60
          MADKS KARKSEVVTREYTVNL K LHGCTFKKKAP AIK+LRKFAQ AMGT DVRVD+K
Sbjct: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPNAIKELRKFAQKAMGTTDVRVDVK 60

[Close]
BLAST of Lcy05g016360 vs. ExPASy TrEMBL
Match: A0A1R3IE52 (Ribosomal protein L31e OS=Corchorus olitorius OX=93759 GN=COLO4_23914 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.0e-18
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 1  MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 60
          MAD+ +K RK EVVTREYT+NL K LHGCTFKKKAPKAIK++RKFAQNAMGTIDVRVD+K
Sbjct: 5  MADRGSKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQNAMGTIDVRVDVK 64

[Close]
BLAST of Lcy05g016360 vs. ExPASy TrEMBL
Match: A0A6P9E9E9 (60S ribosomal protein L31-like isoform X4 OS=Juglans regia OX=51240 GN=LOC109001527 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.6e-18
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 1  MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 60
          M DKS+K RK EVVTREYT+NL K LHGCTFKKKAPKAIK++RKFAQ AMGT DVRVD+K
Sbjct: 1  MVDKSSKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQTAMGTTDVRVDVK 60

[Close]
BLAST of Lcy05g016360 vs. ExPASy TrEMBL
Match: A0A6P9EDU8 (60S ribosomal protein L31-like isoform X3 OS=Juglans regia OX=51240 GN=LOC109001527 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.6e-18
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 1  MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 60
          M DKS+K RK EVVTREYT+NL K LHGCTFKKKAPKAIK++RKFAQ AMGT DVRVD+K
Sbjct: 1  MVDKSSKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQTAMGTTDVRVDVK 60

[Close]
BLAST of Lcy05g016360 vs. ExPASy TrEMBL
Match: A0A6P9DZ09 (60S ribosomal protein L31-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109001527 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.6e-18
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 1  MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 60
          M DKS+K RK EVVTREYT+NL K LHGCTFKKKAPKAIK++RKFAQ AMGT DVRVD+K
Sbjct: 1  MVDKSSKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQTAMGTTDVRVDVK 60

[Close]
BLAST of Lcy05g016360 vs. NCBI nr
Match: XP_023525745.1 (60S ribosomal protein L31-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 107.1 bits (266), Expect = 8.5e-20
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 0 

Query: 1  MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 60
          MADKS KARKSEVVTREYTVNL K LHGCTFKKKAPKAIK+LRKFAQNAMGT DVRVD+K
Sbjct: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60

[Close]
BLAST of Lcy05g016360 vs. NCBI nr
Match: XP_038903425.1 (60S ribosomal protein L31 [Benincasa hispida])

HSP 1 Score: 104.8 bits (260), Expect = 4.2e-19
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 1  MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 60
          MADKS KARKSEVVTREYTVNL K LHGCTFKKKAPKAIK+LRKFAQ AMGT DVRVD+K
Sbjct: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQKAMGTTDVRVDVK 60

[Close]
BLAST of Lcy05g016360 vs. NCBI nr
Match: XP_022152572.1 (60S ribosomal protein L31 [Momordica charantia])

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 0 

Query: 1  MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 60
          MADKS KARKSEVVTREYTVNL K LHGCTFKKKAP AIK+LRKFAQ AMGT DVRVD+K
Sbjct: 1  MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPNAIKELRKFAQKAMGTTDVRVDVK 60

[Close]
BLAST of Lcy05g016360 vs. NCBI nr
Match: OMO80840.1 (Ribosomal protein L31e [Corchorus olitorius])

HSP 1 Score: 102.4 bits (254), Expect = 2.1e-18
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 1  MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 60
          MAD+ +K RK EVVTREYT+NL K LHGCTFKKKAPKAIK++RKFAQNAMGTIDVRVD+K
Sbjct: 5  MADRGSKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQNAMGTIDVRVDVK 64

[Close]
BLAST of Lcy05g016360 vs. NCBI nr
Match: XP_035540988.1 (60S ribosomal protein L31-like isoform X4 [Juglans regia])

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-17
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 1  MADKSTKARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 60
          M DKS+K RK EVVTREYT+NL K LHGCTFKKKAPKAIK++RKFAQ AMGT DVRVD+K
Sbjct: 1  MVDKSSKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQTAMGTTDVRVDVK 60

[Close]
BLAST of Lcy05g016360 vs. TAIR 10
Match: AT5G56710.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-17
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 7  KARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 61
          K RK EV+TREYT+NL + LH CTFKKKAPKAIK++RKFA+ AMGT DVRVD+K
Sbjct: 5  KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVK 58

[Close]
BLAST of Lcy05g016360 vs. TAIR 10
Match: AT4G26230.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 84.3 bits (207), Expect = 5.5e-17
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 0 

Query: 7  KARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 61
          K RK EVVTREYT+NL + LH CTFKKKAPKAIK++RKFA+  MGT DVRVD+K
Sbjct: 5  KGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVK 58

[Close]
BLAST of Lcy05g016360 vs. TAIR 10
Match: AT5G56710.2 (Ribosomal protein L31e family protein )

HSP 1 Score: 83.6 bits (205), Expect = 9.4e-17
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 0 

Query: 7  KARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMKHLTSIY 66
          K RK EV+TREYT+NL + LH CTFKKKAPKAIK++RKFA+ AMGT DVRVD +   S+ 
Sbjct: 5  KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVD-EEFFSLV 64

Query: 67 GIMELGA 74
           + E+ A
Sbjct: 65 TVAEIPA 70

[Close]
BLAST of Lcy05g016360 vs. TAIR 10
Match: AT2G19740.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 7  KARKSEVVTREYTVNLRKCLHGCTFKKKAPKAIKKLRKFAQNAMGTIDVRVDMK 61
          K RK EVVTREYT+NL + LH CTFKKKAP AIK++RKFA  AMGT DVRVD+K
Sbjct: 5  KGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVK 58

The following BLAST results are available for this feature:
BLAST of Lcy05g016360 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M5738.8e-2078.3360S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1[more]
Q9MAV78.2e-1877.1960S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1[more]
P462901.8e-1776.6760S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1[more]
P514204.5e-1674.0760S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2[more]
O650715.9e-1670.3760S ribosomal protein L31 OS=Picea mariana OX=3335 GN=RPL31 PE=2 SV=1[more]
BLAST of Lcy05g016360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DGM17.7e-1986.6760S ribosomal protein L31 OS=Momordica charantia OX=3673 GN=LOC111020269 PE=3 SV... [more]
A0A1R3IE521.0e-1881.67Ribosomal protein L31e OS=Corchorus olitorius OX=93759 GN=COLO4_23914 PE=3 SV=1[more]
A0A6P9E9E98.6e-1880.0060S ribosomal protein L31-like isoform X4 OS=Juglans regia OX=51240 GN=LOC109001... [more]
A0A6P9EDU88.6e-1880.0060S ribosomal protein L31-like isoform X3 OS=Juglans regia OX=51240 GN=LOC109001... [more]
A0A6P9DZ098.6e-1880.0060S ribosomal protein L31-like isoform X1 OS=Juglans regia OX=51240 GN=LOC109001... [more]
BLAST of Lcy05g016360 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023525745.18.5e-2090.0060S ribosomal protein L31-like [Cucurbita pepo subsp. pepo][more]
XP_038903425.14.2e-1988.3360S ribosomal protein L31 [Benincasa hispida][more]
XP_022152572.11.6e-1886.6760S ribosomal protein L31 [Momordica charantia][more]
OMO80840.12.1e-1881.67Ribosomal protein L31e [Corchorus olitorius][more]
XP_035540988.11.8e-1780.0060S ribosomal protein L31-like isoform X4 [Juglans regia][more]
BLAST of Lcy05g016360 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G56710.13.2e-1774.07Ribosomal protein L31e family protein [more]
AT4G26230.15.5e-1774.07Ribosomal protein L31e family protein [more]
AT5G56710.29.4e-1762.69Ribosomal protein L31e family protein [more]
AT2G19740.11.6e-1674.07Ribosomal protein L31e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000054Ribosomal protein L31eSMARTSM01380Ribosomal_L31e_2coord: 11..80
e-value: 1.2E-12
score: 58.0
IPR000054Ribosomal protein L31ePFAMPF01198Ribosomal_L31ecoord: 12..60
e-value: 1.5E-19
score: 70.0
IPR000054Ribosomal protein L31ePANTHERPTHR1095660S RIBOSOMAL PROTEIN L31coord: 1..66
IPR023621Ribosomal protein L31e domain superfamilyGENE3D3.10.440.10coord: 2..66
e-value: 2.3E-19
score: 71.4
IPR023621Ribosomal protein L31e domain superfamilySUPERFAMILY54575Ribosomal protein L31ecoord: 12..60
NoneNo IPR availablePANTHERPTHR10956:SF38OS06G0319700 PROTEINcoord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g016360.1Lcy05g016360.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome