Lcy05g016320 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g016320
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr05: 22449468 .. 22450248 (-)
RNA-Seq ExpressionLcy05g016320
SyntenyLcy05g016320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCGTCCGTCTATTACTTACCCTTCGTCTCGCTTTCAACGGACGTGCTCTCTAATGGCGAAATCAACTTCCACCTGCAAAAATCGAAGATTCCAGACCTCCTTCTTCTCCGAATCTGAAATCGACGTCGCAATACAGCTTATTCATCTCAGCGAAGACTCCGATTACCACGACGACATCACCGCCTCCTCGACTAGTTGCAGCGACGACAAATCCTTCGCCTCCGCCACCAGCGCCACCAACGCCGCTGGAATGGAAGACGACGGAAGCCACACCAGCCGTCGCGGAGCCACGGCGGCGCCTCCAACCACTCTGATAGAAGACATCTTCGAAGAAATCGGAGACGGCGCGAATCGGAGGCGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTAATCTCCGTGAAGTAAATGAAGGAGGAATCGCGGAGCGGAAATCGAATATGTATATTCTCTAACTCTTTGTTCGCTAATTTTCCTGAATCGAAACCTAACTGTGTGTGTTTGTGTTTGTGCATATATATGTATGTAAAGTTATAAATCGTTTTCAGCACTTTTCTGTCTTTCTGCGTGCAATTTAACGGACGTTTTCGCTTATCGTCTGCTCTATTTTTCTTTTCGTTGCTGGTTCCGTGGAAGATGTGCAGAATATAGTGTGTGAACATTGCTTTTGTGTATTTCGAAGTTTTTTTTTACCCATTCTTGAAGTCTTTCTTAAGAGGAAAGGAACAATTAGTTGTTAGTTCTTGAGCAAGGA

mRNA sequence

ATGTTGCGTCCGTCTATTACTTACCCTTCGTCTCGCTTTCAACGGACGTGCTCTCTAATGGCGAAATCAACTTCCACCTGCAAAAATCGAAGATTCCAGACCTCCTTCTTCTCCGAATCTGAAATCGACGTCGCAATACAGCTTATTCATCTCAGCGAAGACTCCGATTACCACGACGACATCACCGCCTCCTCGACTAGTTGCAGCGACGACAAATCCTTCGCCTCCGCCACCAGCGCCACCAACGCCGCTGGAATGGAAGACGACGGAAGCCACACCAGCCGTCGCGGAGCCACGGCGGCGCCTCCAACCACTCTGATAGAAGACATCTTCGAAGAAATCGGAGACGGCGCGAATCGGAGGCGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTAATCTCCGTGAAGTAAATGAAGGAGGAATCGCGGAGCGGAAATCGAATATGTATATTCTCTAACTCTTTGTTCGCTAATTTTCCTGAATCGAAACCTAACTGTGTGTGTTTGTGTTTGTGCATATATATGTATGTAAAGTTATAAATCGTTTTCAGCACTTTTCTGTCTTTCTGCGTGCAATTTAACGGACGTTTTCGCTTATCGTCTGCTCTATTTTTCTTTTCGTTGCTGGTTCCGTGGAAGATGTGCAGAATATAGTGTGTGAACATTGCTTTTGTGTATTTCGAAGTTTTTTTTTACCCATTCTTGAAGTCTTTCTTAAGAGGAAAGGAACAATTAGTTGTTAGTTCTTGAGCAAGGA

Coding sequence (CDS)

ATGTTGCGTCCGTCTATTACTTACCCTTCGTCTCGCTTTCAACGGACGTGCTCTCTAATGGCGAAATCAACTTCCACCTGCAAAAATCGAAGATTCCAGACCTCCTTCTTCTCCGAATCTGAAATCGACGTCGCAATACAGCTTATTCATCTCAGCGAAGACTCCGATTACCACGACGACATCACCGCCTCCTCGACTAGTTGCAGCGACGACAAATCCTTCGCCTCCGCCACCAGCGCCACCAACGCCGCTGGAATGGAAGACGACGGAAGCCACACCAGCCGTCGCGGAGCCACGGCGGCGCCTCCAACCACTCTGATAGAAGACATCTTCGAAGAAATCGGAGACGGCGCGAATCGGAGGCGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTAATCTCCGTGAAGTAA

Protein sequence

MLRPSITYPSSRFQRTCSLMAKSTSTCKNRRFQTSFFSESEIDVAIQLIHLSEDSDYHDDITASSTSCSDDKSFASATSATNAAGMEDDGSHTSRRGATAAPPTTLIEDIFEEIGDGANRRRRKRRSRSVYEIYKLTKPVISVK
Homology
[Close]
BLAST of Lcy05g016320 vs. NCBI nr
Match: KAG6571728.1 (hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.1 bits (479), Expect = 2.6e-44
Identity = 105/126 (83.33%), Postives = 113/126 (89.68%), Query Frame = 0 

Query: 20  MAKSTSTCKNRRFQTSFFSESEIDVAIQLIHLSEDSDYHDDITASSTSCSDDKSFASATS 79
           MAKS S+CKNRRF+TS FS+SEIDVAIQL+HLSEDSDY  +  ASSTSCSDDKS ASATS
Sbjct: 1   MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASATS 60

Query: 80  ATNAAGMEDDGSH-TSRRGATAAPPTTLIEDIFEEIGDGANRRRRKRRSRSVYEIYKLTK 139
           ATNAAGMEDDGSH +SRRGAT  P T+LIEDIFEEIGD +NRRRRKRRSRSVYEIYKLTK
Sbjct: 61  ATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK 120

Query: 140 PVISVK 145
           P ISVK
Sbjct: 121 PFISVK 126

[Close]
BLAST of Lcy05g016320 vs. NCBI nr
Match: KAG6588821.1 (hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 168.7 bits (426), Expect = 3.7e-38
Identity = 97/125 (77.60%), Postives = 105/125 (84.00%), Query Frame = 0 

Query: 20  MAKSTSTCKNRRFQTSFFSESEIDVAIQLIHLSEDSDYHDDITASSTSCSDDKSFASATS 79
           MA+S ST +NRRFQTS FS+SEIDVAIQLIHLSEDSDYHD++ ASSTSCSDDKS ASA S
Sbjct: 1   MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASA-S 60

Query: 80  ATNAAGMEDDGSHTSRRGATAAPPTTLIEDIFEEIGDGANRRRRKRRSRSVYEIYKLTKP 139
            +NA  MEDDG +  RRG      TT IEDI+EEIGDGANRRRRKRRSRSVYEIYKLTKP
Sbjct: 61  NSNADEMEDDGRNNGRRGT----KTTPIEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKP 120

Query: 140 VISVK 145
           VI VK
Sbjct: 121 VIFVK 120

The following BLAST results are available for this feature:
BLAST of Lcy05g016320 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g016320 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g016320 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571728.12.6e-4483.33hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588821.13.7e-3877.60hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy05g016320 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g016320.1Lcy05g016320.1mRNA