Lcy05g015970 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g015970
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
LocationChr05: 21030342 .. 21030797 (+)
RNA-Seq ExpressionLcy05g015970
SyntenyLcy05g015970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAACATCTCAGTCATCGATGCAGCAACCATGGGAAATTCAACTACATTTAGCTCACCACCGCTCAACCAACTTCTAAATCAAATTACCATGATTAAACTGGATAGAGGTAACTTCTTGCTTTGGAAAAACTTGACTCTCTCAATCCTACGAAGCTACAAGCTAGAAGGTCACCTTCTTGGTACCAAACCGTGTCCTCCGAGAGTTATTTCTCAAGTGACAGAAGGAAATGGTAACAATGGAGCAGCCACTGGAGTTGAAGCGTCAAGTTCTGAGGTCCCAACAAGTGGAGCATCTAGCACCACGGTAGAAGCTGCTATAAACCCATTATACGAAGCCTGGATTACAACCGATCAGTTGTTGTTGATCTGGTTATATAATTCCATGACATCAGAAATTGCAACTCAAGTCATGGGATTCGAAAATGCAAAAGACCTCTGGGATGCGATTTAG

mRNA sequence

ATGGCCAACATCTCAGTCATCGATGCAGCAACCATGGGAAATTCAACTACATTTAGCTCACCACCGCTCAACCAACTTCTAAATCAAATTACCATGATTAAACTGGATAGAGGTAACTTCTTGCTTTGGAAAAACTTGACTCTCTCAATCCTACGAAGCTACAAGCTAGAAGGTCACCTTCTTGGTACCAAACCGTGTCCTCCGAGAGTTATTTCTCAAGTGACAGAAGGAAATGGTAACAATGGAGCAGCCACTGGAGTTGAAGCGTCAAGTTCTGAGGTCCCAACAAGTGGAGCATCTAGCACCACGGTAGAAGCTGCTATAAACCCATTATACGAAGCCTGGATTACAACCGATCAGTTGTTGTTGATCTGGTTATATAATTCCATGACATCAGAAATTGCAACTCAAGTCATGGGATTCGAAAATGCAAAAGACCTCTGGGATGCGATTTAG

Coding sequence (CDS)

ATGGCCAACATCTCAGTCATCGATGCAGCAACCATGGGAAATTCAACTACATTTAGCTCACCACCGCTCAACCAACTTCTAAATCAAATTACCATGATTAAACTGGATAGAGGTAACTTCTTGCTTTGGAAAAACTTGACTCTCTCAATCCTACGAAGCTACAAGCTAGAAGGTCACCTTCTTGGTACCAAACCGTGTCCTCCGAGAGTTATTTCTCAAGTGACAGAAGGAAATGGTAACAATGGAGCAGCCACTGGAGTTGAAGCGTCAAGTTCTGAGGTCCCAACAAGTGGAGCATCTAGCACCACGGTAGAAGCTGCTATAAACCCATTATACGAAGCCTGGATTACAACCGATCAGTTGTTGTTGATCTGGTTATATAATTCCATGACATCAGAAATTGCAACTCAAGTCATGGGATTCGAAAATGCAAAAGACCTCTGGGATGCGATTTAG

Protein sequence

MANISVIDAATMGNSTTFSSPPLNQLLNQITMIKLDRGNFLLWKNLTLSILRSYKLEGHLLGTKPCPPRVISQVTEGNGNNGAATGVEASSSEVPTSGASSTTVEAAINPLYEAWITTDQLLLIWLYNSMTSEIATQVMGFENAKDLWDAI
Homology
BLAST of Lcy05g015970 vs. ExPASy TrEMBL
Match: A0A5A7VCS1 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00430 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.4e-32
Identity = 79/147 (53.74%), Postives = 101/147 (68.71%), Query Frame = 0

Query: 3   NISVIDAATMGNSTTFSSPPLNQLLNQITMIKLDRGNFLLWKNLTLSILRSYKLEGHLLG 62
           N SV+D      +T+F++PPLNQ+LNQ+T IKLDR N+LLWK L L IL+ YKLEGHL G
Sbjct: 8   NFSVLDTP----ATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTG 67

Query: 63  TKPCPPRVISQVTEGNGNNGAAT--GVEASSSEVPTSGASSTTVEAAINPLYEAWITTDQ 122
            KPCP + ++ +T   G+NG+ T  G +          +SS +  A INPL+E WI TD 
Sbjct: 68  EKPCPEKFVT-ITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMTDL 127

Query: 123 LLLIWLYNSMTSEIATQVMGFENAKDL 148
           LLL WLYNSMT ++A Q+MGF NAKDL
Sbjct: 128 LLLGWLYNSMTPKVAVQLMGFTNAKDL 149

BLAST of Lcy05g015970 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 9.9e-32
Identity = 77/150 (51.33%), Postives = 99/150 (66.00%), Query Frame = 0

Query: 1   MANISVIDAATMGNSTTFSSPPLNQLLNQITMIKLDRGNFLLWKNLTLSILRSYKLEGHL 60
           M N + I + T   +T+F++P LNQ+LNQ+T IKLDRGN+LLWK L L IL+SYKL  HL
Sbjct: 1   MTNAAPI-SVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHL 60

Query: 61  LGTKPCPPRVISQVTEGNGNNGAATGVEASSSEVPTSGASSTTVEAAINPLYEAWITTDQ 120
            G  PC P++I   T+ N        +  ++ E     +SS+T    +NP YE WITTD 
Sbjct: 61  FGESPCLPKIIMLTTQPN------ESIVENAGEPSQETSSSSTAVVTVNPKYERWITTDL 120

Query: 121 LLLIWLYNSMTSEIATQVMGFENAKDLWDA 151
           LLL WLYNSMT E+  Q+MGF NAKDLW+A
Sbjct: 121 LLLGWLYNSMTPEVTIQLMGFTNAKDLWEA 143

BLAST of Lcy05g015970 vs. ExPASy TrEMBL
Match: A0A1S4DY80 (uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 9.9e-32
Identity = 77/150 (51.33%), Postives = 99/150 (66.00%), Query Frame = 0

Query: 1   MANISVIDAATMGNSTTFSSPPLNQLLNQITMIKLDRGNFLLWKNLTLSILRSYKLEGHL 60
           M N + I + T   +T+F++P LNQ+LNQ+T IKLDRGN+LLWK L L IL+SYKL  HL
Sbjct: 76  MTNAAPI-SVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHL 135

Query: 61  LGTKPCPPRVISQVTEGNGNNGAATGVEASSSEVPTSGASSTTVEAAINPLYEAWITTDQ 120
            G  PC P++I   T+ N        +  ++ E     +SS+T    +NP YE WITTD 
Sbjct: 136 FGESPCLPKIIMLTTQPN------ESIVENAGEPSQETSSSSTAVVTVNPKYERWITTDL 195

Query: 121 LLLIWLYNSMTSEIATQVMGFENAKDLWDA 151
           LLL WLYNSMT E+  Q+MGF NAKDLW+A
Sbjct: 196 LLLGWLYNSMTPEVTIQLMGFTNAKDLWEA 218

BLAST of Lcy05g015970 vs. ExPASy TrEMBL
Match: A0A1S4E1U9 (uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.9e-31
Identity = 76/150 (50.67%), Postives = 95/150 (63.33%), Query Frame = 0

Query: 1   MANISVIDAATMGNSTTFSSPPLNQLLNQITMIKLDRGNFLLWKNLTLSILRSYKLEGHL 60
           MAN     A    +S  FS+PPLNQ+LNQ+T +KLDR N+LLWK L L IL+ YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  LGTKPCPPRVISQVTEGNGNNGAATGVEASSSEVPTSGASSTTVEAAINPLYEAWITTDQ 120
               PCP   +   +  N      T V    ++  T GASS+     +NPL+E W+TTD 
Sbjct: 61  TAETPCPSHFVLSASSSN------TTVTEEGADA-TIGASSSITPRIVNPLFEQWVTTDL 120

Query: 121 LLLIWLYNSMTSEIATQVMGFENAKDLWDA 151
           LLL WLYNSMT ++A Q+MGF N +DLWDA
Sbjct: 121 LLLGWLYNSMTPDVAIQLMGFTNVEDLWDA 143

BLAST of Lcy05g015970 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.9e-31
Identity = 76/150 (50.67%), Postives = 95/150 (63.33%), Query Frame = 0

Query: 1   MANISVIDAATMGNSTTFSSPPLNQLLNQITMIKLDRGNFLLWKNLTLSILRSYKLEGHL 60
           MAN     A    +S  FS+PPLNQ+LNQ+T +KLDR N+LLWK L L IL+ YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  LGTKPCPPRVISQVTEGNGNNGAATGVEASSSEVPTSGASSTTVEAAINPLYEAWITTDQ 120
               PCP   +   +  N      T V    ++  T GASS+     +NPL+E W+TTD 
Sbjct: 61  TAETPCPSHFVLSASSSN------TTVTEEGADA-TIGASSSITPRIVNPLFEQWVTTDL 120

Query: 121 LLLIWLYNSMTSEIATQVMGFENAKDLWDA 151
           LLL WLYNSMT ++A Q+MGF N +DLWDA
Sbjct: 121 LLLGWLYNSMTPDVAIQLMGFTNVEDLWDA 143

BLAST of Lcy05g015970 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 7.0e-32
Identity = 79/147 (53.74%), Postives = 101/147 (68.71%), Query Frame = 0

Query: 3   NISVIDAATMGNSTTFSSPPLNQLLNQITMIKLDRGNFLLWKNLTLSILRSYKLEGHLLG 62
           N SV+D      +T+F++PPLNQ+LNQ+T IKLDR N+LLWK L L IL+ YKLEGHL G
Sbjct: 8   NFSVLDTP----ATSFTNPPLNQILNQLTTIKLDRSNYLLWKTLALPILKGYKLEGHLTG 67

Query: 63  TKPCPPRVISQVTEGNGNNGAAT--GVEASSSEVPTSGASSTTVEAAINPLYEAWITTDQ 122
            KPCP + ++ +T   G+NG+ T  G +          +SS +  A INPL+E WI TD 
Sbjct: 68  EKPCPEKFVT-ITSSAGSNGSVTEEGDDREQRAPKQIASSSMSAPAIINPLFEQWIMTDL 127

Query: 123 LLLIWLYNSMTSEIATQVMGFENAKDL 148
           LLL WLYNSMT ++A Q+MGF NAKDL
Sbjct: 128 LLLGWLYNSMTPKVAVQLMGFTNAKDL 149

BLAST of Lcy05g015970 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 2.0e-31
Identity = 77/150 (51.33%), Postives = 99/150 (66.00%), Query Frame = 0

Query: 1   MANISVIDAATMGNSTTFSSPPLNQLLNQITMIKLDRGNFLLWKNLTLSILRSYKLEGHL 60
           M N + I + T   +T+F++P LNQ+LNQ+T IKLDRGN+LLWK L L IL+SYKL  HL
Sbjct: 1   MTNAAPI-SVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHL 60

Query: 61  LGTKPCPPRVISQVTEGNGNNGAATGVEASSSEVPTSGASSTTVEAAINPLYEAWITTDQ 120
            G  PC P++I   T+ N        +  ++ E     +SS+T    +NP YE WITTD 
Sbjct: 61  FGESPCLPKIIMLTTQPN------ESIVENAGEPSQETSSSSTAVVTVNPKYERWITTDL 120

Query: 121 LLLIWLYNSMTSEIATQVMGFENAKDLWDA 151
           LLL WLYNSMT E+  Q+MGF NAKDLW+A
Sbjct: 121 LLLGWLYNSMTPEVTIQLMGFTNAKDLWEA 143

BLAST of Lcy05g015970 vs. NCBI nr
Match: XP_016900937.1 (PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 2.0e-31
Identity = 77/150 (51.33%), Postives = 99/150 (66.00%), Query Frame = 0

Query: 1   MANISVIDAATMGNSTTFSSPPLNQLLNQITMIKLDRGNFLLWKNLTLSILRSYKLEGHL 60
           M N + I + T   +T+F++P LNQ+LNQ+T IKLDRGN+LLWK L L IL+SYKL  HL
Sbjct: 76  MTNAAPI-SVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHL 135

Query: 61  LGTKPCPPRVISQVTEGNGNNGAATGVEASSSEVPTSGASSTTVEAAINPLYEAWITTDQ 120
            G  PC P++I   T+ N        +  ++ E     +SS+T    +NP YE WITTD 
Sbjct: 136 FGESPCLPKIIMLTTQPN------ESIVENAGEPSQETSSSSTAVVTVNPKYERWITTDL 195

Query: 121 LLLIWLYNSMTSEIATQVMGFENAKDLWDA 151
           LLL WLYNSMT E+  Q+MGF NAKDLW+A
Sbjct: 196 LLLGWLYNSMTPEVTIQLMGFTNAKDLWEA 218

BLAST of Lcy05g015970 vs. NCBI nr
Match: XP_038887015.1 (uncharacterized protein LOC120077182 [Benincasa hispida])

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-31
Identity = 84/152 (55.26%), Postives = 100/152 (65.79%), Query Frame = 0

Query: 1   MANISVIDAATMGNSTTFSSPPLNQLLNQITMIKLDRGNFLLWKNLTLSILRSYKLEGHL 60
           MAN ++   +++G ST FS+PPLNQLLNQIT  KL+RG F+LWK L L ILR YKLE HL
Sbjct: 1   MAN-AIATGSSIGESTKFSTPPLNQLLNQITNTKLERGYFMLWKTLALPILRGYKLERHL 60

Query: 61  LGTKPCPPR-VISQVTEGNGNNGAATGVEASSSEVPTSGASSTTVEAAINPLYEAWITTD 120
            GTK C P   +S +          TG   S +   + GASS T E   NPLYE W+T D
Sbjct: 61  SGTKICSPMFTVSTIP------SIETGDFGSQA---SGGASSATGERTFNPLYEVWVTAD 120

Query: 121 QLLLIWLYNSMTSEIATQVMGFENAKDLWDAI 152
           QLLL W YNSMT E+A Q+MG E+AK LWDAI
Sbjct: 121 QLLLGWPYNSMTPEVAVQLMGHESAKSLWDAI 142

BLAST of Lcy05g015970 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-30
Identity = 76/150 (50.67%), Postives = 95/150 (63.33%), Query Frame = 0

Query: 1   MANISVIDAATMGNSTTFSSPPLNQLLNQITMIKLDRGNFLLWKNLTLSILRSYKLEGHL 60
           MAN     A    +S  FS+PPLNQ+LNQ+T +KLDR N+LLWK L L IL+ YKLEGHL
Sbjct: 1   MANAQPTAAPPSLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHL 60

Query: 61  LGTKPCPPRVISQVTEGNGNNGAATGVEASSSEVPTSGASSTTVEAAINPLYEAWITTDQ 120
               PCP   +   +  N      T V    ++  T GASS+     +NPL+E W+TTD 
Sbjct: 61  TAETPCPSHFVLSASSSN------TTVTEEGADA-TIGASSSITPRIVNPLFEQWVTTDL 120

Query: 121 LLLIWLYNSMTSEIATQVMGFENAKDLWDA 151
           LLL WLYNSMT ++A Q+MGF N +DLWDA
Sbjct: 121 LLLGWLYNSMTPDVAIQLMGFTNVEDLWDA 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VCS13.4e-3253.74Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m... [more]
A0A5A7VPY09.9e-3251.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S4DY809.9e-3251.33uncharacterized protein LOC107991116 OS=Cucumis melo OX=3656 GN=LOC107991116 PE=... [more]
A0A1S4E1U94.9e-3150.67uncharacterized protein LOC107991581 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E1U64.9e-3150.67uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
KAA0066132.17.0e-3253.74putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak... [more]
KAA0067279.12.0e-3151.33uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa][more]
XP_016900937.12.0e-3151.33PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo][more]
XP_038887015.13.5e-3155.26uncharacterized protein LOC120077182 [Benincasa hispida][more]
XP_016902203.11.0e-3050.67PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..99
NoneNo IPR availablePANTHERPTHR47481FAMILY NOT NAMEDcoord: 101..150
coord: 16..75
NoneNo IPR availablePANTHERPTHR47481:SF3GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 101..150
NoneNo IPR availablePANTHERPTHR47481:SF3GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 16..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g015970.1Lcy05g015970.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process