Lcy05g015770 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g015770
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	helicase protein MOM1
Location	Chr05: 20412923 .. 20416309 (-)
RNA-Seq Expression	Lcy05g015770
Synteny	Lcy05g015770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGTTGAAAGTATGGTAAAGGATACTCGATCTAGTGTCAGAGCGAGGAATGAGGATAACAACAATCCAAAAGGGAAACAAAATGGTGACAAGGCTACGACAAGAGCAGGTTCTACTACGCCAGATACATCTGCTTTGAGAAGGTCTGCGAGAGAGACATCATTGAAGAAAAAGATTGATGCAACCCCTTCCAAATCTAGAAAATCTGAGCGTCTTGACAAGCAACCACCTAGCACTCCTCGTGATAAAAAGAAACATGGTACCATTGAAAAGCAGAACGAGCTTAATCCGCTTAGAAGATCTGAGAGGGGTAAAAAACAGTCTTCATCTACTTCTTCAGGATCTAGATCTAAGAAATCAGATAAAAGTTCATCTACCTCTTCAGGATCTGTATCTAAGAAATCAGATAAAAGCTCAGGTTCACCAAATTGCAGGGATTAAAGCCCTAGCGCAGCGGAAACGATCAGAGAACTTAATCGGTTTAAATGCCGATTGGGAAACCAATACGACGGCAAAAGAAATAAATTTACAGCAGATAAATAAACAAAAATACATGCTGTAAAAGCTATAAAACATGCTGGAAAAATATGCAGAAACTCTAGATTTGGACCCTATCGATCCTAGTTCAAGAATGACTTACCCTTGTAGAAATTCTTGAACGTTTCGCCTATTTCCCTTGATGTTTACAGAAAAAACAGCAGCAAACGGATCTTGATCATGCTGCAAAAACCTCACGAACACCACCACCAAAAGTTCACCGGTATTCTCTTGAAGGTTGAACGCAAGGGGCTTGTGGGAGCACAATCTCTAAGGATTTCTCTGGAAAAAATTCTGTATTCACAGAGAGAGAGCAAAAACGAGAGAGAGAGGGCGAGAGAGAGGGAGAGAGGCGTGAGAGTGGGGATTGTTAAAACTGAATAATGACCCCTTCACTTAACCTATCGATAAGGAGAAGGCCACCTCACGCATAACATCAGGTAACTGATTAATCAGTTACCTGATATTTTTAATTAATTATAAATTTAAAATTCAAAATTTAAATTATAATTAATTAAATTTTAATTAATCAATATTAATTAAAATAACATTAATTTAAATCTTATTTAAATTAATATCCCTCTTAACCTATAGTTTAATTAAATCAAATTTAATTAAACTAAATCAATTAATTAATTCAAAATTAATTAATTTAAAAATAATAAAATTGAACATCATATATTCAATTATTATTATTCTCTCTCATAAAACTATAGTATTAATATACATCCAATGCACATTAATTATAACCTATAGTTTTAATATGAATCAAATTCATATTTTAGTTTAATATTCGAACCCCTTCGAATACTTAATTTAACCTTAGAAATTTACCTCAACGCCCTTATAGAGCTACCGATGGGACCTGATGGACCTACAGATCAGAAGCTCCAACGATATGGGATTAGTTGGCTAAACTCATTAACCAAGTTAATCAATATTCGTTAACTGTGGTTCACTCCACTAAAGAACCACAGCTGCACTCTTCTCACTGCAGATATATTTCTGTGTCCACGGATATCGACCGTCAACAGCAAGTTAGCCCTTCACGTGTGTTCGTACCCCAGCTAGGTCAAATTACCGTTTTACCCCTGGGCTACCTCTTGGTCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTATTTGTGGTCCAACCAACAAACAGAAATCCCTCTCGTGCCATAAAGAGGGTAGGGCCCTTTGTTCAAGACCCGGAGACACCACTTAAGGGAACACACCTCTACTTACCCTAATATCGGGAATGAGTGAATTCCATCTTGTAAGACTACGTTCCCAGCTCCCCACTCGGTCTTGTCCCCAAAATGGTAGGCTTATTGAGTCGGCGAATAGGCCACTCTCACCCGTACAAATCAAAGGACAATCCCTCATGGACAGGAGTCCATAATCCACTCAGGATTAAGGCCAAGTTGCCTAGGTCATCCTAGTGAAATAGAAACCGAGCTAACTAACGGTGTTACAGTTAGTGGTAAACTATTTCGCGGTCCGGTCTTTGTGCAAACTCATTGCACAGGATACCCCCACTCGCATGTCAACTACATGAACGCGTTGGATCAATACGTTTGTATCAATATACAAAGCGGGCCGTATCCATAGTGTCACCAGGACAAGGTACCCAGCCTTATCCCTATACTACAGACCCTTTAGGCTAAAACTTGAACATTGATCCCCGTATGTCCCTACATACTAGTTCAAGCCTCATTCTATTAGCCTTGGATGTTTAGTTTATTGGATTAGAGTTATTAAGACAAGATATAATACAAACATTGAATAATACATCATTTTTATTAATGTTCGGTCAAATGTACATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAAACTCCCACTTGAACTAAAACTCAAGTTACAGGGAAAGTATATACAATATAATCCAAAGCTGGAAATGGTACATGTATGTTGTACATTACATAAAAAGTAAATATACAAAATACAATAAACTAGGGCATCCTTACACCCATTACACATCTCTCACTTGCCCTAGATTACGCTATATACATGTCTCGCAGACCTAGACTTTCTAGATGACCCTCGAACACTTTAGCCGAGAGGGCCTTCGTAAACGGATCAGCAATGTTGTGCTCGGATTGGAGTCCCACTCGGTAGTAGTTGAACTCCTCTTGTTGAGTTGTTTTTCCATATGCCATTATATATTCTTTCATTTTTTTTTTCAATGAAAGCTTGGTTTTTGGGAAAAAAAAAACCTATGAACCTTTGCATGCCACACTTGCATCAAGTGAGAGGCAGAATGGAAGTGGTATATAATTTCAATCATGTAGGACCTGTCCACTTATTTGGGCACATTAGGATTCATCACGGGGGAAATATTTCTACACCTTACCGGCCTATCCACACAAAGCACTTGAGAATAATAACTTATTCAGTACAAATACGGCCTTGTTAAGGCTATGGCCATATTGGTTAGTGCACTAGGATGCCAAAACAATGTTGCATATTGAGATAATGATGCTATGCTCGACATTTGTAAAAGTGGAAAAGCTCTTATGTTTCACCTTAAAAGCAGGAAAAACTAATCTACAAAGACTTTTATTGACTTATATTATGTATGCAAATATATTTTGATAATTTTCTTGGACTTGTTTGCTCCCAAGTTCGTTCTTCGTTTCACTTTAGTTGTTGATGAATTAAAGAAAAGATTGAAGAGATGAAAGACCCTTTTATTTTGCTCAAATAGTGAGGAGAACCATGAAATTTTAGGAATCGTTCAAGATGGGTTCAAGGATAGTTCCAATGCATTTGATTTGTTAACTCTTTTTTTTTTAGGTGAGATGAAACTTTCTAGGCA

mRNA sequence

TAGTTGAAAGTATGGTAAAGGATACTCGATCTAGTGTCAGAGCGAGGAATGAGGATAACAACAATCCAAAAGGGAAACAAAATGGTGACAAGGCTACGACAAGAGCAGGTTCTACTACGCCAGATACATCTGCTTTGAGAAGGTCTGCGAGAGAGACATCATTGAAGAAAAAGATTGATGCAACCCCTTCCAAATCTAGAAAATCTGAGCGTCTTGACAAGCAACCACCTAGCACTCCTCGTGATAAAAAGAAACATGGTACCATTGAAAAGCAGAACGAGCTTAATCCGCTTAGAAGATCTGAGAGGGGTGAGATGAAACTTTCTAGGCA

Coding sequence (CDS)

TAGTTGAAAGTATGGTAAAGGATACTCGATCTAGTGTCAGAGCGAGGAATGAGGATAACAACAATCCAAAAGGGAAACAAAATGGTGACAAGGCTACGACAAGAGCAGGTTCTACTACGCCAGATACATCTGCTTTGAGAAGGTCTGCGAGAGAGACATCATTGAAGAAAAAGATTGATGCAACCCCTTCCAAATCTAGAAAATCTGAGCGTCTTGACAAGCAACCACCTAGCACTCCTCGTGATAAAAAGAAACATGGTACCATTGAAAAGCAGAACGAGCTTAATCCGCTTAGAAGATCTGAGAGGGGTGAGATGAAACTTTCTAGGCA

Protein sequence

VESMVKDTRSSVRARNEDNNNPKGKQNGDKATTRAGSTTPDTSALRRSARETSLKKKIDATPSKSRKSERLDKQPPSTPRDKKKHGTIEKQNELNPLRRSERGEMKLSR

Homology

[Close]

BLAST of Lcy05g015770 vs. ExPASy TrEMBL
Match: A0A6J1DG63 (uncharacterized protein LOC111020533 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111020533 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.0e-33
Identity = 86/105 (81.90%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 4   MVKDTRSSVRARNEDNNNPKGKQNGDKATTRAGSTTPDTSALRRSARETSLKKKIDATPS 63
           MVKDTRSSVRA+NE+NNNPKGKQNGDKATTRAGS+TPDTSALRRSARETS KKKI +TPS
Sbjct: 1   MVKDTRSSVRAKNEENNNPKGKQNGDKATTRAGSSTPDTSALRRSARETSWKKKIVSTPS 60

Query: 64  KSRKSERLDKQPPSTPRDKKKHGTIEKQNELNPLRRSERGEMKLS 109
            SRKSERL+KQPPSTP DKKK GTIE Q+ LN LRRS+RG+ + S
Sbjct: 61  SSRKSERLEKQPPSTPCDKKKRGTIEDQDRLNLLRRSQRGKNQSS 105

[Close]

BLAST of Lcy05g015770 vs. ExPASy TrEMBL
Match: A0A6J1DJ68 (uncharacterized protein LOC111020533 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020533 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.0e-33
Identity = 86/105 (81.90%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 4   MVKDTRSSVRARNEDNNNPKGKQNGDKATTRAGSTTPDTSALRRSARETSLKKKIDATPS 63
           MVKDTRSSVRA+NE+NNNPKGKQNGDKATTRAGS+TPDTSALRRSARETS KKKI +TPS
Sbjct: 1   MVKDTRSSVRAKNEENNNPKGKQNGDKATTRAGSSTPDTSALRRSARETSWKKKIVSTPS 60

Query: 64  KSRKSERLDKQPPSTPRDKKKHGTIEKQNELNPLRRSERGEMKLS 109
            SRKSERL+KQPPSTP DKKK GTIE Q+ LN LRRS+RG+ + S
Sbjct: 61  SSRKSERLEKQPPSTPCDKKKRGTIEDQDRLNLLRRSQRGKNQSS 105

[Close]

BLAST of Lcy05g015770 vs. ExPASy TrEMBL
Match: A0A6J1DHK2 (uncharacterized protein LOC111020533 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020533 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.0e-33
Identity = 86/105 (81.90%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 4   MVKDTRSSVRARNEDNNNPKGKQNGDKATTRAGSTTPDTSALRRSARETSLKKKIDATPS 63
           MVKDTRSSVRA+NE+NNNPKGKQNGDKATTRAGS+TPDTSALRRSARETS KKKI +TPS
Sbjct: 1   MVKDTRSSVRAKNEENNNPKGKQNGDKATTRAGSSTPDTSALRRSARETSWKKKIVSTPS 60

Query: 64  KSRKSERLDKQPPSTPRDKKKHGTIEKQNELNPLRRSERGEMKLS 109
            SRKSERL+KQPPSTP DKKK GTIE Q+ LN LRRS+RG+ + S
Sbjct: 61  SSRKSERLEKQPPSTPCDKKKRGTIEDQDRLNLLRRSQRGKNQSS 105

[Close]

BLAST of Lcy05g015770 vs. ExPASy TrEMBL
Match: A0A6J1KDL3 (helicase protein MOM1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493379 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.5e-33
Identity = 83/105 (79.05%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 4   MVKDTRSSVRARNEDNNNPKGKQNGDKATTRAGSTTPDTSALRRSARETSLKKKIDATPS 63
           MVKDTRSSV+A NE+N+N KGKQNGDK TTRAGSTTPDTS+LRRSAR+TSLKKKIDATP 
Sbjct: 1   MVKDTRSSVKASNEENSNLKGKQNGDKVTTRAGSTTPDTSSLRRSARDTSLKKKIDATPP 60

Query: 64  KSRKSERLDKQPPSTPRDKKKHGTIEKQNELNPLRRSERGEMKLS 109
           KSRKSERLD +P STP+DKKKHGT+E QNE+N +RRSERG+ + S
Sbjct: 61  KSRKSERLDNKPSSTPQDKKKHGTLENQNEVNSVRRSERGKKQSS 105

[Close]

BLAST of Lcy05g015770 vs. ExPASy TrEMBL
Match: A0A6J1GCT4 (helicase protein MOM1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452784 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 82/101 (81.19%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 4   MVKDTRSSVRARNEDNNNPKGKQNGDKATTRAGSTTPDTSALRRSARETSLKKKIDATPS 63
           MVKDTRSSV+A NE+N+N KGKQNGDK TTRAGSTTPDTS+LRRSAR+TSLKKKIDATP 
Sbjct: 1   MVKDTRSSVKASNEENSNLKGKQNGDKVTTRAGSTTPDTSSLRRSARDTSLKKKIDATPP 60

Query: 64  KSRKSERLDKQPPSTPRDKKKHGTIEKQNELNPLRRSERGE 105
           KSRKSERLD +P STP+DKKKHGT+E QNE+N +RRSERG+
Sbjct: 61  KSRKSERLDNKPSSTPQDKKKHGTLENQNEVNSVRRSERGK 101

[Close]

BLAST of Lcy05g015770 vs. NCBI nr
Match: KAG6607145.1 (Helicase protein MOM1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150.6 bits (379), Expect = 7.8e-33
Identity = 83/104 (79.81%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   VESMVKDTRSSVRARNEDNNNPKGKQNGDKATTRAGSTTPDTSALRRSARETSLKKKIDA 60
           + SMVKDTRSSV+A NE+N+N KGKQNGDK TTRAGSTTPDTS+LRRSAR+TSLKKKIDA
Sbjct: 30  IGSMVKDTRSSVKASNEENSNLKGKQNGDKVTTRAGSTTPDTSSLRRSARDTSLKKKIDA 89

Query: 61  TPSKSRKSERLDKQPPSTPRDKKKHGTIEKQNELNPLRRSERGE 105
           TP KSRKSERLD +P STP+DKKKHGT+E QNE+N +RRSERG+
Sbjct: 90  TPPKSRKSERLDNKPSSTPQDKKKHGTLENQNEVNSVRRSERGK 133

[Close]

BLAST of Lcy05g015770 vs. NCBI nr
Match: XP_022152921.1 (uncharacterized protein LOC111020533 isoform X1 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-32
Identity = 86/105 (81.90%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 4   MVKDTRSSVRARNEDNNNPKGKQNGDKATTRAGSTTPDTSALRRSARETSLKKKIDATPS 63
           MVKDTRSSVRA+NE+NNNPKGKQNGDKATTRAGS+TPDTSALRRSARETS KKKI +TPS
Sbjct: 1   MVKDTRSSVRAKNEENNNPKGKQNGDKATTRAGSSTPDTSALRRSARETSWKKKIVSTPS 60

Query: 64  KSRKSERLDKQPPSTPRDKKKHGTIEKQNELNPLRRSERGEMKLS 109
            SRKSERL+KQPPSTP DKKK GTIE Q+ LN LRRS+RG+ + S
Sbjct: 61  SSRKSERLEKQPPSTPCDKKKRGTIEDQDRLNLLRRSQRGKNQSS 105

[Close]

BLAST of Lcy05g015770 vs. NCBI nr
Match: XP_022152923.1 (uncharacterized protein LOC111020533 isoform X3 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-32
Identity = 86/105 (81.90%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 4   MVKDTRSSVRARNEDNNNPKGKQNGDKATTRAGSTTPDTSALRRSARETSLKKKIDATPS 63
           MVKDTRSSVRA+NE+NNNPKGKQNGDKATTRAGS+TPDTSALRRSARETS KKKI +TPS
Sbjct: 1   MVKDTRSSVRAKNEENNNPKGKQNGDKATTRAGSSTPDTSALRRSARETSWKKKIVSTPS 60

Query: 64  KSRKSERLDKQPPSTPRDKKKHGTIEKQNELNPLRRSERGEMKLS 109
            SRKSERL+KQPPSTP DKKK GTIE Q+ LN LRRS+RG+ + S
Sbjct: 61  SSRKSERLEKQPPSTPCDKKKRGTIEDQDRLNLLRRSQRGKNQSS 105

[Close]

BLAST of Lcy05g015770 vs. NCBI nr
Match: XP_022152922.1 (uncharacterized protein LOC111020533 isoform X2 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-32
Identity = 86/105 (81.90%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 4   MVKDTRSSVRARNEDNNNPKGKQNGDKATTRAGSTTPDTSALRRSARETSLKKKIDATPS 63
           MVKDTRSSVRA+NE+NNNPKGKQNGDKATTRAGS+TPDTSALRRSARETS KKKI +TPS
Sbjct: 1   MVKDTRSSVRAKNEENNNPKGKQNGDKATTRAGSSTPDTSALRRSARETSWKKKIVSTPS 60

Query: 64  KSRKSERLDKQPPSTPRDKKKHGTIEKQNELNPLRRSERGEMKLS 109
            SRKSERL+KQPPSTP DKKK GTIE Q+ LN LRRS+RG+ + S
Sbjct: 61  SSRKSERLEKQPPSTPCDKKKRGTIEDQDRLNLLRRSQRGKNQSS 105

[Close]

BLAST of Lcy05g015770 vs. NCBI nr
Match: XP_022998834.1 (helicase protein MOM1 isoform X1 [Cucurbita maxima] >XP_022998835.1 helicase protein MOM1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 83/105 (79.05%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 4   MVKDTRSSVRARNEDNNNPKGKQNGDKATTRAGSTTPDTSALRRSARETSLKKKIDATPS 63
           MVKDTRSSV+A NE+N+N KGKQNGDK TTRAGSTTPDTS+LRRSAR+TSLKKKIDATP 
Sbjct: 1   MVKDTRSSVKASNEENSNLKGKQNGDKVTTRAGSTTPDTSSLRRSARDTSLKKKIDATPP 60

Query: 64  KSRKSERLDKQPPSTPRDKKKHGTIEKQNELNPLRRSERGEMKLS 109
           KSRKSERLD +P STP+DKKKHGT+E QNE+N +RRSERG+ + S
Sbjct: 61  KSRKSERLDNKPSSTPQDKKKHGTLENQNEVNSVRRSERGKKQSS 105

The following BLAST results are available for this feature:

BLAST of Lcy05g015770 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g015770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DG63	5.0e-33	81.90	uncharacterized protein LOC111020533 isoform X3 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DJ68	5.0e-33	81.90	uncharacterized protein LOC111020533 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DHK2	5.0e-33	81.90	uncharacterized protein LOC111020533 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1KDL3	6.5e-33	79.05	helicase protein MOM1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493379 PE=...	[more]
A0A6J1GCT4	1.1e-32	81.19	helicase protein MOM1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452784 P...	[more]

BLAST of Lcy05g015770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607145.1	7.8e-33	79.81	Helicase protein MOM1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022152921.1	1.0e-32	81.90	uncharacterized protein LOC111020533 isoform X1 [Momordica charantia]	[more]
XP_022152923.1	1.0e-32	81.90	uncharacterized protein LOC111020533 isoform X3 [Momordica charantia]	[more]
XP_022152922.1	1.0e-32	81.90	uncharacterized protein LOC111020533 isoform X2 [Momordica charantia]	[more]
XP_022998834.1	1.3e-32	79.05	helicase protein MOM1 isoform X1 [Cucurbita maxima] >XP_022998835.1 helicase pro...	[more]

BLAST of Lcy05g015770 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..47
None	No IPR available	PANTHER	PTHR35116:SF8	HELICASE PROTEIN MOM1-LIKE ISOFORM X1	coord: 4..106
IPR039322	MOM1	PANTHER	PTHR35116	HELICASE PROTEIN MOM1	coord: 4..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g015770.1	Lcy05g015770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0046872	metal ion binding