Lcy05g015290 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g015290
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ethylene-responsive transcription factor ERF071
Location	Chr05: 19036139 .. 19036465 (+)
RNA-Seq Expression	Lcy05g015290
Synteny	Lcy05g015290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGTGGTGCCATTATTGCCGACTTAATCCCTCGCTGCGACGGCCAACGCGTTACCGCTTCCGACATTTGGCCGAACTCCACCTTCTTCGATTTCAACAAATGTCCATCTGATCGCGATGTAGCTCCCGTCAAACGCCCGCTCCGTTCTTCTGGTAAGATTTTGCTTTTGCGTTACTCTGTTCCTTTGTTGATTTGGAGTTAGACTTCTGGTTTTTGCTGAAATTTGTGACGGATTGATGTTGCAGAGGCTTCTTGGAGAGATGAGAAGCCGAAGAAGAGGCAGAGGAATTCGTCAGCGGCCTTGGGGAAAATGGGCGGTTGA

mRNA sequence

ATGTGTGGTGGTGCCATTATTGCCGACTTAATCCCTCGCTGCGACGGCCAACGCGTTACCGCTTCCGACATTTGGCCGAACTCCACCTTCTTCGATTTCAACAAATGTCCATCTGATCGCGATGTAGCTCCCGTCAAACGCCCGCTCCGTTCTTCTGAGGCTTCTTGGAGAGATGAGAAGCCGAAGAAGAGGCAGAGGAATTCGTCAGCGGCCTTGGGGAAAATGGGCGGTTGA

Coding sequence (CDS)

ATGTGTGGTGGTGCCATTATTGCCGACTTAATCCCTCGCTGCGACGGCCAACGCGTTACCGCTTCCGACATTTGGCCGAACTCCACCTTCTTCGATTTCAACAAATGTCCATCTGATCGCGATGTAGCTCCCGTCAAACGCCCGCTCCGTTCTTCTGAGGCTTCTTGGAGAGATGAGAAGCCGAAGAAGAGGCAGAGGAATTCGTCAGCGGCCTTGGGGAAAATGGGCGGTTGA

Protein sequence

MCGGAIIADLIPRCDGQRVTASDIWPNSTFFDFNKCPSDRDVAPVKRPLRSSEASWRDEKPKKRQRNSSAALGKMGG

Homology

[Close]

BLAST of Lcy05g015290 vs. ExPASy TrEMBL
Match: A0A6J1F751 (ethylene-responsive transcription factor ERF071 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441468 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 55/68 (80.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MCGGAIIADLIPRCDGQRVTASDIWPNSTFFDFNKCPSDRDVAPVKRPLRSSEASWRDEK 60
          MCGGA IA  IPR DGQRVTASDIWPNS  FDFNKCP D D +PVKRPLRSSEASW DEK
Sbjct: 1  MCGGAFIAGFIPRRDGQRVTASDIWPNSPLFDFNKCPPDHDASPVKRPLRSSEASWTDEK 60

Query: 61 PKKRQRNS 69
          PKKRQR +
Sbjct: 61 PKKRQRKN 68

[Close]

BLAST of Lcy05g015290 vs. ExPASy TrEMBL
Match: A0A6J1J9H3 (ethylene-responsive transcription factor ERF071-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482486 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 54/68 (79.41%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MCGGAIIADLIPRCDGQRVTASDIWPNSTFFDFNKCPSDRDVAPVKRPLRSSEASWRDEK 60
          MCGGA IA  IPR DGQRV+ASDIWPNS  FDFNKCP D D +PVKRPLRSSEASW DEK
Sbjct: 1  MCGGAFIAGFIPRRDGQRVSASDIWPNSPLFDFNKCPPDHDASPVKRPLRSSEASWTDEK 60

Query: 61 PKKRQRNS 69
          PKKRQR +
Sbjct: 61 PKKRQRKN 68

[Close]

BLAST of Lcy05g015290 vs. ExPASy TrEMBL
Match: A0A6J1DMH3 (ethylene-responsive transcription factor ERF071 OS=Momordica charantia OX=3673 GN=LOC111022398 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.3e-23
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1  MCGGAIIADLIPRCDGQRVTASDIWPNSTFFDFNKCP----SDRDVAPVKRPLRSSEASW 60
          MCGGAIIADLIPR DGQRV+ASDIWPNS+ FDF+K P     D DVAPVKRPLRSSEASW
Sbjct: 1  MCGGAIIADLIPRRDGQRVSASDIWPNSSLFDFSKFPCGRDRDHDVAPVKRPLRSSEASW 60

Query: 61 RDEKPKKRQRNS 69
          RDEKPKKRQR +
Sbjct: 61 RDEKPKKRQRKN 72

[Close]

BLAST of Lcy05g015290 vs. ExPASy TrEMBL
Match: A0A6J1F218 (ethylene-responsive transcription factor ERF071 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441468 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.9e-19
Identity = 51/68 (75.00%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 1  MCGGAIIADLIPRCDGQRVTASDIWPNSTFFDFNKCPSDRDVAPVKRPLRSSEASWRDEK 60
          MCGGA IA  IPR DGQRVTASDIWPNS  FDFNKCP D D +PVKRPLRSS     DEK
Sbjct: 1  MCGGAFIAGFIPRRDGQRVTASDIWPNSPLFDFNKCPPDHDASPVKRPLRSS-----DEK 60

Query: 61 PKKRQRNS 69
          PKKRQR +
Sbjct: 61 PKKRQRKN 63

[Close]

BLAST of Lcy05g015290 vs. ExPASy TrEMBL
Match: A0A6J1J9D8 (ethylene-responsive transcription factor ERF071-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482486 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.4e-19
Identity = 50/68 (73.53%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 1  MCGGAIIADLIPRCDGQRVTASDIWPNSTFFDFNKCPSDRDVAPVKRPLRSSEASWRDEK 60
          MCGGA IA  IPR DGQRV+ASDIWPNS  FDFNKCP D D +PVKRPLRSS     DEK
Sbjct: 1  MCGGAFIAGFIPRRDGQRVSASDIWPNSPLFDFNKCPPDHDASPVKRPLRSS-----DEK 60

Query: 61 PKKRQRNS 69
          PKKRQR +
Sbjct: 61 PKKRQRKN 63

[Close]

BLAST of Lcy05g015290 vs. NCBI nr
Match: XP_023526563.1 (ethylene-responsive transcription factor ERF071 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.6 bits (296), Expect = 2.3e-23
Identity = 55/68 (80.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MCGGAIIADLIPRCDGQRVTASDIWPNSTFFDFNKCPSDRDVAPVKRPLRSSEASWRDEK 60
          MCGGA IA  IPR DGQRVTASDIWPNS  FDFNKCP D D +PVKRPLRSSEASW DEK
Sbjct: 1  MCGGAFIAGFIPRRDGQRVTASDIWPNSPLFDFNKCPPDHDASPVKRPLRSSEASWTDEK 60

Query: 61 PKKRQRNS 69
          PKKRQR +
Sbjct: 61 PKKRQRKN 68

[Close]

BLAST of Lcy05g015290 vs. NCBI nr
Match: XP_022934248.1 (ethylene-responsive transcription factor ERF071 isoform X1 [Cucurbita moschata])

HSP 1 Score: 118.6 bits (296), Expect = 2.3e-23
Identity = 55/68 (80.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MCGGAIIADLIPRCDGQRVTASDIWPNSTFFDFNKCPSDRDVAPVKRPLRSSEASWRDEK 60
          MCGGA IA  IPR DGQRVTASDIWPNS  FDFNKCP D D +PVKRPLRSSEASW DEK
Sbjct: 1  MCGGAFIAGFIPRRDGQRVTASDIWPNSPLFDFNKCPPDHDASPVKRPLRSSEASWTDEK 60

Query: 61 PKKRQRNS 69
          PKKRQR +
Sbjct: 61 PKKRQRKN 68

[Close]

BLAST of Lcy05g015290 vs. NCBI nr
Match: KAG7018006.1 (Ethylene-responsive transcription factor RAP2-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.6 bits (296), Expect = 2.3e-23
Identity = 55/68 (80.88%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MCGGAIIADLIPRCDGQRVTASDIWPNSTFFDFNKCPSDRDVAPVKRPLRSSEASWRDEK 60
          MCGGA IA  IPR DGQRVTASDIWPNS  FDFNKCP D D +PVKRPLRSSEASW DEK
Sbjct: 1  MCGGAFIAGFIPRRDGQRVTASDIWPNSPLFDFNKCPPDHDASPVKRPLRSSEASWTDEK 60

Query: 61 PKKRQRNS 69
          PKKRQR +
Sbjct: 61 PKKRQRKN 68

[Close]

BLAST of Lcy05g015290 vs. NCBI nr
Match: XP_022984063.1 (ethylene-responsive transcription factor ERF071-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 117.1 bits (292), Expect = 6.8e-23
Identity = 54/68 (79.41%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MCGGAIIADLIPRCDGQRVTASDIWPNSTFFDFNKCPSDRDVAPVKRPLRSSEASWRDEK 60
          MCGGA IA  IPR DGQRV+ASDIWPNS  FDFNKCP D D +PVKRPLRSSEASW DEK
Sbjct: 1  MCGGAFIAGFIPRRDGQRVSASDIWPNSPLFDFNKCPPDHDASPVKRPLRSSEASWTDEK 60

Query: 61 PKKRQRNS 69
          PKKRQR +
Sbjct: 61 PKKRQRKN 68

[Close]

BLAST of Lcy05g015290 vs. NCBI nr
Match: XP_022155258.1 (ethylene-responsive transcription factor ERF071 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 8.9e-23
Identity = 58/72 (80.56%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1  MCGGAIIADLIPRCDGQRVTASDIWPNSTFFDFNKCP----SDRDVAPVKRPLRSSEASW 60
          MCGGAIIADLIPR DGQRV+ASDIWPNS+ FDF+K P     D DVAPVKRPLRSSEASW
Sbjct: 1  MCGGAIIADLIPRRDGQRVSASDIWPNSSLFDFSKFPCGRDRDHDVAPVKRPLRSSEASW 60

Query: 61 RDEKPKKRQRNS 69
          RDEKPKKRQR +
Sbjct: 61 RDEKPKKRQRKN 72

The following BLAST results are available for this feature:

BLAST of Lcy05g015290 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g015290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F751	1.1e-23	80.88	ethylene-responsive transcription factor ERF071 isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1J9H3	3.3e-23	79.41	ethylene-responsive transcription factor ERF071-like isoform X1 OS=Cucurbita max...	[more]
A0A6J1DMH3	4.3e-23	80.56	ethylene-responsive transcription factor ERF071 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1F218	2.9e-19	75.00	ethylene-responsive transcription factor ERF071 isoform X2 OS=Cucurbita moschata...	[more]
A0A6J1J9D8	8.4e-19	73.53	ethylene-responsive transcription factor ERF071-like isoform X2 OS=Cucurbita max...	[more]

BLAST of Lcy05g015290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023526563.1	2.3e-23	80.88	ethylene-responsive transcription factor ERF071 isoform X1 [Cucurbita pepo subsp...	[more]
XP_022934248.1	2.3e-23	80.88	ethylene-responsive transcription factor ERF071 isoform X1 [Cucurbita moschata]	[more]
KAG7018006.1	2.3e-23	80.88	Ethylene-responsive transcription factor RAP2-3 [Cucurbita argyrosperma subsp. a...	[more]
XP_022984063.1	6.8e-23	79.41	ethylene-responsive transcription factor ERF071-like isoform X1 [Cucurbita maxim...	[more]
XP_022155258.1	8.9e-23	80.56	ethylene-responsive transcription factor ERF071 [Momordica charantia]	[more]

BLAST of Lcy05g015290 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g015290.1	Lcy05g015290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009873	ethylene-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity