Lcy05g015200 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g015200
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr05: 18874294 .. 18874524 (-)
RNA-Seq ExpressionLcy05g015200
SyntenyLcy05g015200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAGTTCCTCTAGAGCTCCAACACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCGTTACTTCATGTGGGCGATTGGAGGTCCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAATAA

mRNA sequence

ATGACCAGTTCCTCTAGAGCTCCAACACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCGTTACTTCATGTGGGCGATTGGAGGTCCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAATAA

Coding sequence (CDS)

ATGACCAGTTCCTCTAGAGCTCCAACACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCGTTACTTCATGTGGGCGATTGGAGGTCCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGGTTCGCACCCTGAAGAAATAA

Protein sequence

MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
Homology
BLAST of Lcy05g015200 vs. ExPASy TrEMBL
Match: A0A5D3CQS4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00390 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.7e-17
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 1  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRD 60
          M SSSRAP HTWT  E+AKLVE LV L+  G WRS+NGTFR GY AQL+ +M EKLP  +
Sbjct: 1  MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61 VPAQSCIESRVRTLKK 77
          +     I+ RV++LKK
Sbjct: 61 IQGSPTIDYRVKSLKK 76

BLAST of Lcy05g015200 vs. ExPASy TrEMBL
Match: A0A5A7UNC0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00650 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.5e-16
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 0

Query: 1  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRD 60
          M++S+RAP H WT  E+  LVE L+ L+ +G W+SDNGTFRSGY AQL  +M EKLPG  
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELMSMGGWKSDNGTFRSGYLAQLVRMMAEKLPGCQ 60

Query: 61 VPAQSCIESRVRTLKK 77
          V A + I+ R++TLK+
Sbjct: 61 VRATTVIDCRIKTLKR 76

BLAST of Lcy05g015200 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.6e-16
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 0

Query: 1  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRD 60
          M S SRAP HTWT  E+ K VE LV L+  G WRSDNGTF+ GY AQL+ +M EKLPG +
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 VPAQSCIESRVRTLKK 77
          +   S I+  V++LKK
Sbjct: 61 IQESSTIDCHVKSLKK 76

BLAST of Lcy05g015200 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.6e-16
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 0

Query: 1  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRD 60
          M S SRAP HTWT  E+ K VE LV L+  G WRSDNGTF+ GY AQL+ +M EKLPG +
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 VPAQSCIESRVRTLKK 77
          +   S I+  V++LKK
Sbjct: 61 IQESSTIDCHVKSLKK 76

BLAST of Lcy05g015200 vs. ExPASy TrEMBL
Match: A0A5A7TQ37 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G003200 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.9e-15
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 1  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRD 60
          M++S+RAP H WT  E+  LVE L+ L+ +G W+SDNGTFR GY AQL  +M EKLPG  
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSIGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VPAQSCIESRVRTLKK 77
          V A + I+ R++TLK+
Sbjct: 61 VRATTVIDCRIKTLKR 76

BLAST of Lcy05g015200 vs. NCBI nr
Match: KAA0066605.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 45/76 (59.21%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 1  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRD 60
          M SSSRAP HTWT  E+AKLVE LV L+  G WRS+NGTFR GY AQL+ +M EKLP  +
Sbjct: 1  MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61 VPAQSCIESRVRTLKK 77
          +     I+ RV++LKK
Sbjct: 61 IQGSPTIDYRVKSLKK 76

BLAST of Lcy05g015200 vs. NCBI nr
Match: KAA0056560.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 0

Query: 1  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRD 60
          M++S+RAP H WT  E+  LVE L+ L+ +G W+SDNGTFRSGY AQL  +M EKLPG  
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELMSMGGWKSDNGTFRSGYLAQLVRMMAEKLPGCQ 60

Query: 61 VPAQSCIESRVRTLKK 77
          V A + I+ R++TLK+
Sbjct: 61 VRATTVIDCRIKTLKR 76

BLAST of Lcy05g015200 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.8e-15
Identity = 43/76 (56.58%), Postives = 53/76 (69.74%), Query Frame = 0

Query: 1  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRD 60
          M S SRAP HTWT  E+ K VE LV L+  G WRSDNGTF+ GY AQL+ +M EKLPG +
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 VPAQSCIESRVRTLKK 77
          +   S I+  V++LKK
Sbjct: 61 IQESSTIDCHVKSLKK 76

BLAST of Lcy05g015200 vs. NCBI nr
Match: XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-15
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 1  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRD 60
          MTSSSRAP H WT  E+A LVE +V L+  G W+SDNGTFR GY AQL  +M  KLPG +
Sbjct: 1  MTSSSRAPKHVWTKEEEATLVECMVKLVSAGRWKSDNGTFRPGYLAQLLRMMVVKLPGCN 60

Query: 61 VPAQSCIESRVRTLKK 77
          V A + I+ R++TLK+
Sbjct: 61 VHATTVIDYRIKTLKR 76

BLAST of Lcy05g015200 vs. NCBI nr
Match: KAA0045008.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-15
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 0

Query: 1  MTSSSRAPTHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRD 60
          M++S+RAP H WT  E+  LVE L+ L+ +G W+SDNGTFR GY AQL  +M EKLPG  
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSIGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VPAQSCIESRVRTLKK 77
          V A + I+ R++TLK+
Sbjct: 61 VRATTVIDCRIKTLKR 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CQS47.7e-1759.21Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UNC06.5e-1655.26Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U0H78.6e-1656.58Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L38.6e-1656.58uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
A0A5A7TQ371.9e-1553.95Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0066605.11.6e-1659.21retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon p... [more]
KAA0056560.11.4e-1555.26retrotransposon protein [Cucumis melo var. makuwa][more]
XP_008441954.11.8e-1556.58PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
XP_031742657.13.0e-1557.89uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharact... [more]
KAA0045008.13.9e-1553.95retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 3..76
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 3..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g015200.1Lcy05g015200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane