Lcy05g015180 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g015180
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionMitochondrial protein import protein ZIM17
LocationChr05: 18855292 .. 18858527 (-)
RNA-Seq ExpressionLcy05g015180
SyntenyLcy05g015180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTCTAATCAACGCTTCTTCTGCTGCAATCGTCTCCTCTTCTTCATCTTTTCCTATGTCTTCTCCCAACAGGATGCTTCCTCTCAAATCTTTTCAAGCTTCACACGCCTCGAAAGGTATTCGATCATCTCCGAATTGTTTTCGAGTTTGTTTCTCTTCTATTTGTTTTCATCTTTTTTTTATGAAAATTTTAATCGGTGTGTTGTCGATTAAAATTTTCATAAAAAAAATTTATTATGTTATCGGTTTGATCTTTCAATTGTCTGTTTAAGCCTTGGAATGTGTGTTTACGTAACTGGTACGTGGGCGTGACAAAGCACGTTTCTTGCTGAGTGCAAGTATACACTATCAAGTAATAAAGTGGAGACTCCGGATATCGTACCCAAGGGAGATGGTGACTAGTTAAGAACCTCCTCTAAGTTTGCAACTGAGGATGGTAGCCAAAGAAATAATTTGATGGAGATTTTTGTGTTTGAAGACAAAAAGAATAAAGAAAGCAAGTAAATGTAAGCGACTAAAGATATATGAGATAAACAGGGAATTCAAATAAGTTTAAACCAAAAGCATTAAAATGCGCCCACCTTTGTGCTAGCAACTCACTCAGGCACTGCACACGGCTGGAGAGTACTATCTGTAAGTGCCCACATACACATGGTGCAGATAGATTGCTACCAGTTTACGCCCGCAAATACCTTGACAACTAGATTGTGAGTTAAGTCCTACTCCTCTTCAGCTCCGTTGTAGGTGCCTTTAGAAGACTAAGCCAACTAGACATCTATTTCTAGGGCTAGTTGAAATTTAGATAATTATTGTACACGACTCCCAAAACTCTAGTGGTTTTAGTCCTATTTCTAGGGATGCAAGAAAACATAGTCCTATTTCTAGGATCTTTTCCACTATTGTTTTTGCGAACCCACGCATTCAACTCCAACTTTTCGACCACCAGCTGAACACAAACTATGCTAACTTAAGTGATCAGTTTAAGCTAACAATGAAACTTAAACTTTCAGCAAAAACAAACAATGCTAAGAGGAAGCAAGGTTGCCTTTGCATTGGTGAGGTTTTCTTCTACTAAAGGTATCCACATATTTGAACCCCCGAGAAAAAGCTTAGCTTATTGAGGAAACTAAAATGCAAGGCATGAAGTAAAAAACACACAAAGTAAAGAAACAACTATAATTCATATTGATAATTGAAAAGAATACATAAAATAAAGAACTTACAACTGAAAATTGAATTAAAACAAAAAGTACAGCAACTTACAAAAGAAAAAAAAAACAGAAAGTAAAAACTCTAGACTCAACTAAAGGTTCTTTCTCCTCTCTATCTAACTTACTCTTAACATTTTTTAATGGGAGACAAGTATTTCTCTTCTTCTTCTTTCGAATGGAAGAGTCGACAGAGGCTAGAAGAACCGGAACTCGGAGTGGTTACAAGATGAGAAGAAAGAAAAGCAATAAAACTATCCTAAGGATGAAAATTCGAGCTCTCTTTTCTTCTTGCACCTTAGTCGCCTTATATAGACCTTGGAAGGTAGGGTTGGTTGCCGAGATCAGTGTGAGAGGACCCTTAAAGGTAAAAATCCACGATCCTGGGAGATTTGATACGAGATTTTAGATTTTCGGATGATTTTGTGAAGATCCCGCGAATCTCGAAATTTTGTCGGAAAGCCCAATTACAGTCGCATCTCGGGCACAAATTCCTTTGTGTACTGCTTTGACAATTCTATCTTCAGCTGGGACTACTTTTCTTATCAGTTTGCGGGCGCAATTCAAACACAAATTCCACATTCTCAGGACCAAATGTGGTCACAAATTTGCAACTTCAACCTTTTGCTCCGCTAACTCTTTATCTCCAATTGCAAGCGCATTTCCACCACAAATTGTCCTTTGCACAAAAATATTATCTTGGATAAATTCTTACAAAAGTAATCTCTTTTTGGACATTTTAAGCATAAATTCTATATTTCTAAGATTTCTAACGTGATTTTAAGACTTTTGCTATTTTCACTCTAAAAGATATGAATTTAAGCATAAAGTCCTTGTTTCCTAGCAATAACCTAAGTTTTTAAGACTAAATAACACACATAAATAAGCATTATCAGTAACAAGAACAAATATGATTCGCAGTCTGATTCTAAGCATTATCAGTAAATGCCATCTCTCCCTTTCGCCTCTTTCAAAGGTATCCTCTGTATTATTGTTATTATTTTATTTTTTTTTTAAAAAAAAATTAATGCTCTCTTCCTTTTGTATCTCTGCAAATTTGAGATTATTAGAATTCATGGTATTTAAAGTTTTGTGCAAGATGATGTTTATGGTTTTTTTATACATACAACTGCTTGTTATGATCTCGTGGTTAAAAAGAACCCAAAAACTAGAGACGATTGCTTATTTAAATTTATGTAAGAAGAAAAATGATGATTCTGGAGTAAGAGAGTTCATGAACTGAACCTTTATATAGGTGCAATTGGTTGGCTTGAATCCTATTCATATTCAGCGATGGAGGATTATCAAAATTCGGTAGCCCAAGTGGCGTTTCAACATTGATGAAGTTTACTTCTCTATTGAAAAGAAAAGAATGCTATTCAAAGTCTACATTAATTATTAAGAATTAAATTAGATATATAGTCTTTTTGTTCGCCCATTCGACGTTGATGAAGGTAAATACTGTGCTCATGGAGTATGTACATTCTAGACTCTATCTGTTCAAGAATAATTATGTGTTATGTATATTGTTCTATATATCAAATAGGAACTCAATTTGGACATAGAAATTGAATAACAAGATTCTGCAGGTCAATCAGTGAAACAATTTTGAAATGCACTCTGATCTTCTCTTAGTTTTCTTTATTGGAGCTTAGTTGCAGTTAAACTTAAAAGGATGGTGTAGCAGTTGGATTAATTTAAGAACTATAGTTAGTAGTGGAGAGTTGTTTCCTGTCTGCCCTATTTTGTGCTTCTATGGCTGTGATATGAAGGAAATAGAAGAATGATGATTGGTTTTCAGCTATAAGCCAACTCATCAGATTTTAATTTCTTCCGTTTCTTCCACTTGAATTTATAGTTGGGTCAGTGAGGATTGGCTGGTTTTACAGTTGGATCAGACAACTTTAGGAAAGAAATGGAAATGACTGTCCTTATTCTTGGGCTTGGAAAGTCATATTTGGGCCCAACGTTCCAGAGAAATGAATCATTTGGGCCATGGGAGATTGTAGCATTCTTACTCTAG

mRNA sequence

ATGGAGTCTCTAATCAACGCTTCTTCTGCTGCAATCGTCTCCTCTTCTTCATCTTTTCCTATGTCTTCTCCCAACAGGATGCTTCCTCTCAAATCTTTTCAAGCTTCACACGCCTCGAAAGTTGGATCAGACAACTTTAGGAAAGAAATGGAAATGACTGTCCTTATTCTTGGGCTTGGAAAGTCATATTTGGGCCCAACGTTCCAGAGAAATGAATCATTTGGGCCATGGGAGATTGTAGCATTCTTACTCTAG

Coding sequence (CDS)

ATGGAGTCTCTAATCAACGCTTCTTCTGCTGCAATCGTCTCCTCTTCTTCATCTTTTCCTATGTCTTCTCCCAACAGGATGCTTCCTCTCAAATCTTTTCAAGCTTCACACGCCTCGAAAGTTGGATCAGACAACTTTAGGAAAGAAATGGAAATGACTGTCCTTATTCTTGGGCTTGGAAAGTCATATTTGGGCCCAACGTTCCAGAGAAATGAATCATTTGGGCCATGGGAGATTGTAGCATTCTTACTCTAG

Protein sequence

MESLINASSAAIVSSSSSFPMSSPNRMLPLKSFQASHASKVGSDNFRKEMEMTVLILGLGKSYLGPTFQRNESFGPWEIVAFLL
Homology
[Close]
BLAST of Lcy05g015180 vs. ExPASy TrEMBL
Match: A0A6J1EQU5 (uncharacterized protein LOC111435053 OS=Cucurbita moschata OX=3662 GN=LOC111435053 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MESLINASSAAIVSSSSSFPMSSPNRMLPLKSFQASHASKVGSDN 46
          MESLINASSAAIVSSSSSFP+SSPNRMLPL+SFQ  HASK G++N
Sbjct: 1  MESLINASSAAIVSSSSSFPISSPNRMLPLRSFQVPHASK-GNEN 44

[Close]
BLAST of Lcy05g015180 vs. ExPASy TrEMBL
Match: A0A6J1HYG2 (uncharacterized protein LOC111468074 OS=Cucurbita maxima OX=3661 GN=LOC111468074 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-08
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1   MESLINASSAAIVSSSSSFPMSSPNRMLPLKSFQASHASKVGSDN 46
           MESLINASSAAI+SSSSSFP+SSPNRMLPL+SFQ  HASK G++N
Sbjct: 76  MESLINASSAAIISSSSSFPISSPNRMLPLRSFQVPHASK-GNEN 119

[Close]
BLAST of Lcy05g015180 vs. ExPASy TrEMBL
Match: A0A6J1GM10 (uncharacterized protein LOC111455528 OS=Cucurbita moschata OX=3662 GN=LOC111455528 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.3e-08
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MESLINASSAAIVSSSSSFPMSSPNRMLPLKSFQASHASKVGSDN 46
          MESLINASSAAI+SSSSSFP+SSPNRMLPL+SFQ  HASK G++N
Sbjct: 1  MESLINASSAAIISSSSSFPISSPNRMLPLRSFQVPHASK-GNEN 44

[Close]
BLAST of Lcy05g015180 vs. ExPASy TrEMBL
Match: A0A6J1JJL2 (uncharacterized protein LOC111486391 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486391 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.3e-08
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MESLINASSAAIVSSSSSFPMSSPNRMLPLKSFQASHASKVGSDN 46
          MESLINASSAAIVSSSS+FP+SSPNRMLPL+SFQ  HASK G++N
Sbjct: 1  MESLINASSAAIVSSSSTFPISSPNRMLPLRSFQVPHASK-GNEN 44

[Close]
BLAST of Lcy05g015180 vs. ExPASy TrEMBL
Match: A0A5D3D712 (Mitochondrial protein import protein ZIM17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3037G00120 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.0e-07
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0 

Query: 1  MESLINASSAAIVSSSSSFPMSSPNRMLPLKSFQASHASKVGSDN 46
          MESLINASSAAIVSSSSSFP+SSP R LPL+SFQ  HASK G+DN
Sbjct: 1  MESLINASSAAIVSSSSSFPISSPIRNLPLRSFQVPHASK-GNDN 44

[Close]
BLAST of Lcy05g015180 vs. NCBI nr
Match: KAG7022739.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.4 bits (163), Expect = 6.7e-08
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1   MESLINASSAAIVSSSSSFPMSSPNRMLPLKSFQASHASKVGSDN 46
           MESLINASSAAIVSSSSSFP+SSPNRMLPL+SFQ  HASK G++N
Sbjct: 718 MESLINASSAAIVSSSSSFPISSPNRMLPLRSFQVPHASK-GNEN 761

[Close]
BLAST of Lcy05g015180 vs. NCBI nr
Match: XP_023529786.1 (uncharacterized protein LOC111792506 [Cucurbita pepo subsp. pepo] >XP_023529787.1 uncharacterized protein LOC111792506 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.4 bits (163), Expect = 6.7e-08
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MESLINASSAAIVSSSSSFPMSSPNRMLPLKSFQASHASKVGSDN 46
          MESLINASSAAIVSSSSSFP+SSPNRMLPL+SFQ  HASK G++N
Sbjct: 1  MESLINASSAAIVSSSSSFPISSPNRMLPLRSFQVPHASK-GNEN 44

[Close]
BLAST of Lcy05g015180 vs. NCBI nr
Match: KAG6589024.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 6.7e-08
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1   MESLINASSAAIVSSSSSFPMSSPNRMLPLKSFQASHASKVGSDN 46
           MESLINASSAAIVSSSSSFP+SSPNRMLPL+SFQ  HASK G++N
Sbjct: 627 MESLINASSAAIVSSSSSFPISSPNRMLPLRSFQVPHASK-GNEN 670

[Close]
BLAST of Lcy05g015180 vs. NCBI nr
Match: XP_022928140.1 (uncharacterized protein LOC111435053 [Cucurbita moschata] >XP_022928141.1 uncharacterized protein LOC111435053 [Cucurbita moschata])

HSP 1 Score: 67.4 bits (163), Expect = 6.7e-08
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MESLINASSAAIVSSSSSFPMSSPNRMLPLKSFQASHASKVGSDN 46
          MESLINASSAAIVSSSSSFP+SSPNRMLPL+SFQ  HASK G++N
Sbjct: 1  MESLINASSAAIVSSSSSFPISSPNRMLPLRSFQVPHASK-GNEN 44

[Close]
BLAST of Lcy05g015180 vs. NCBI nr
Match: XP_022953012.1 (uncharacterized protein LOC111455528 [Cucurbita moschata] >KAG6572131.1 hypothetical protein SDJN03_28859, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011787.1 ZIM17 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 8.8e-08
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 1  MESLINASSAAIVSSSSSFPMSSPNRMLPLKSFQASHASKVGSDN 46
          MESLINASSAAI+SSSSSFP+SSPNRMLPL+SFQ  HASK G++N
Sbjct: 1  MESLINASSAAIISSSSSFPISSPNRMLPLRSFQVPHASK-GNEN 44

The following BLAST results are available for this feature:
BLAST of Lcy05g015180 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g015180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EQU53.3e-0884.44uncharacterized protein LOC111435053 OS=Cucurbita moschata OX=3662 GN=LOC1114350... [more]
A0A6J1HYG24.3e-0882.22uncharacterized protein LOC111468074 OS=Cucurbita maxima OX=3661 GN=LOC111468074... [more]
A0A6J1GM104.3e-0882.22uncharacterized protein LOC111455528 OS=Cucurbita moschata OX=3662 GN=LOC1114555... [more]
A0A6J1JJL27.3e-0882.22uncharacterized protein LOC111486391 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A5D3D7128.0e-0782.22Mitochondrial protein import protein ZIM17 OS=Cucumis melo var. makuwa OX=119469... [more]
BLAST of Lcy05g015180 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022739.16.7e-0884.44Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_023529786.16.7e-0884.44uncharacterized protein LOC111792506 [Cucurbita pepo subsp. pepo] >XP_023529787.... [more]
KAG6589024.16.7e-0884.44Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022928140.16.7e-0884.44uncharacterized protein LOC111435053 [Cucurbita moschata] >XP_022928141.1 unchar... [more]
XP_022953012.18.8e-0882.22uncharacterized protein LOC111455528 [Cucurbita moschata] >KAG6572131.1 hypothet... [more]
BLAST of Lcy05g015180 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g015180.1Lcy05g015180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0030150 protein import into mitochondrial matrix
biological_process GO:0050821 protein stabilization
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0051087 chaperone binding
molecular_function GO:0008270 zinc ion binding