Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCAATGTGGCAGTCATTAGATGGGGTGGAGCAACATCTATTCACATATGAAATATCTCCCTCTTATAGTCGATGGATTCCTCATGGAGAACCAGTTGACTTGTCCAAAGGATTTGAGGTTTGAACAGTTAATTCGATACCAAGTGATCAAGATTTAGGTATTGATGTGCTTGGTGTTGGGAATGAAGAAAACAAAATGTCGAATAATCTTCTATATGATCTACAGGCTCCAATTGTTGATGCAGATGTAGATGAGGAAAACATTGAGAATGAGATGCCCACTAATGTCCATGCGATTGAGACTTCAAATTCAAGCTTATTTGACGAATTAATGAATGAAGCTTGTAATCAGTTATATCCTGGTTGTACCCTATTTTCTTCATTGTACTTTATGGTTAAGTTGATGCATATTAAGGTCATCAACGAATGGAGTAACAAGTCATTTGATATGTTATTGTTGGAGTTATTAAAAGAGGCTTTTCCTAACGGAATGAAAATACCCTTTTCATTTTATGAATCTAAGAGAAAATTACGTGACTTAAGGCTAGGATATGAATCCATCCATGCTTGCAAGTACGATTGCTATTGTATTGGAAAGAATTTTCCGACTACGAAGAGTGCCTAG
mRNA sequence
ATGAATGCAATGTGGCAGTCATTAGATGGGGTGGAGCAACATCTATTCACATATGAAATATCTCCCTCTTATAGTCGATGGATTCCTCATGGAGAACCAGTTGACTTGTCCAAAGGATTTGAGGCTCCAATTGTTGATGCAGATGTAGATGAGGAAAACATTGAGAATGAGATGCCCACTAATGTCCATGCGATTGAGACTTCAAATTCAAGCTTATTTGACGAATTAATGAATGAAGCTTGTAATCAGTTATATCCTGGTTGTACCCTATTTTCTTCATTGTACTTTATGGTTAAGTTGATGCATATTAAGGTCATCAACGAATGGAGTAACAAGTCATTTGATATGTTATTGTTGGAGTTATTAAAAGAGGCTTTTCCTAACGGAATGAAAATACCCTTTTCATTTTATGAATCTAAGAGAAAATTACGTGACTTAAGGCTAGGATATGAATCCATCCATGCTTGCAAGTACGATTGCTATTGTATTGGAAAGAATTTTCCGACTACGAAGAGTGCCTAG
Coding sequence (CDS)
ATGAATGCAATGTGGCAGTCATTAGATGGGGTGGAGCAACATCTATTCACATATGAAATATCTCCCTCTTATAGTCGATGGATTCCTCATGGAGAACCAGTTGACTTGTCCAAAGGATTTGAGGCTCCAATTGTTGATGCAGATGTAGATGAGGAAAACATTGAGAATGAGATGCCCACTAATGTCCATGCGATTGAGACTTCAAATTCAAGCTTATTTGACGAATTAATGAATGAAGCTTGTAATCAGTTATATCCTGGTTGTACCCTATTTTCTTCATTGTACTTTATGGTTAAGTTGATGCATATTAAGGTCATCAACGAATGGAGTAACAAGTCATTTGATATGTTATTGTTGGAGTTATTAAAAGAGGCTTTTCCTAACGGAATGAAAATACCCTTTTCATTTTATGAATCTAAGAGAAAATTACGTGACTTAAGGCTAGGATATGAATCCATCCATGCTTGCAAGTACGATTGCTATTGTATTGGAAAGAATTTTCCGACTACGAAGAGTGCCTAG
Protein sequence
MNAMWQSLDGVEQHLFTYEISPSYSRWIPHGEPVDLSKGFEAPIVDADVDEENIENEMPTNVHAIETSNSSLFDELMNEACNQLYPGCTLFSSLYFMVKLMHIKVINEWSNKSFDMLLLELLKEAFPNGMKIPFSFYESKRKLRDLRLGYESIHACKYDCYCIGKNFPTTKSA
Homology
BLAST of Lcy05g015160 vs. ExPASy TrEMBL
Match:
A0A5D3C5I5 (Phytocyanin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001090 PE=4 SV=1)
HSP 1 Score: 191.0 bits (484), Expect = 4.0e-45
Identity = 105/197 (53.30%), Postives = 126/197 (63.96%), Query Frame = 0
Query: 1 MNAMWQSLDGVEQHLFTYEISPSYSRWIPHGEPVDLSKGFE------------------- 60
MN+MW+SL+GVE+HL T ISPSY WI HGE V+L +G E
Sbjct: 271 MNSMWESLEGVERHLLTVGISPSYVNWIYHGERVNLPRGLERVATHLHHDDEGTSNLFEQ 330
Query: 61 -----------APIVDADVDEENIENEMPTNVHAIETSNSSLFDELMNEACNQLYPGCTL 120
PI + + EE ENEMP + +T +SLF++LMNEA N+LYPGC+
Sbjct: 331 NEMLDLLNDLQVPIENEEETEEAFENEMPFDDDQQDT--TSLFEDLMNEARNELYPGCSK 390
Query: 121 FSSLYFMVKLMHIKVINEWSNKSFDMLLLELLKEAFPNGMKIPFSFYESKRKLRDLRLGY 168
FSSL F+VKLM IKV+N WSNKSFDM LL++LK AFP G IP SF+E+KRKL DL LGY
Sbjct: 391 FSSLNFLVKLMRIKVLNGWSNKSFDM-LLKMLKAAFPAGTIIPTSFFEAKRKLHDLGLGY 450
BLAST of Lcy05g015160 vs. ExPASy TrEMBL
Match:
A0A5A7SP00 (CACTA transposable element OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002580 PE=4 SV=1)
HSP 1 Score: 181.8 bits (460), Expect = 2.4e-42
Identity = 105/205 (51.22%), Postives = 129/205 (62.93%), Query Frame = 0
Query: 2 NAMWQSLDGVEQHLFTYEISPSYSRWIPHGEPVDLSK-------------GFEAPIVDAD 61
N+M Q+LD VE+HLFTY IS Y++W+ HGE +L++ E+ I D D
Sbjct: 28 NSMTQTLDVVERHLFTYGISSVYNKWVYHGEATNLARFERGASSSEGERLSRESNIGDED 87
Query: 62 VD---------------EEN------IENEMPTNVHAIETSNSSLFDELMNEACNQLYPG 121
D EEN ++E+P +V I TSN +F+ELMNEA N LYPG
Sbjct: 88 DDILDLLTDLQGSMIAREENFDDGDGFDDEVPEDVDEINTSN--VFEELMNEARNPLYPG 147
Query: 122 CTLFSSLYFMVKLMHIKVINEWSNKSFDMLLLELLKEAFPNGMKIPFSFYESKRKLRDLR 173
CT FSSL F+VKLMHIKV+N WSNKSFDM LLELLK+AFP G IP S YE+KR+L D+
Sbjct: 148 CTKFSSLNFLVKLMHIKVLNNWSNKSFDM-LLELLKDAFPIGTYIPKSLYEAKRRLCDIG 207
BLAST of Lcy05g015160 vs. ExPASy TrEMBL
Match:
A0A1S3C1V3 (uncharacterized protein LOC103495895 OS=Cucumis melo OX=3656 GN=LOC103495895 PE=4 SV=1)
HSP 1 Score: 181.8 bits (460), Expect = 2.4e-42
Identity = 105/205 (51.22%), Postives = 129/205 (62.93%), Query Frame = 0
Query: 2 NAMWQSLDGVEQHLFTYEISPSYSRWIPHGEPVDLSK-------------GFEAPIVDAD 61
N+M Q+LD VE+HLFTY IS Y++W+ HGE +L++ E+ I D D
Sbjct: 28 NSMTQTLDVVERHLFTYGISSVYNKWVYHGEATNLARFERGASSSEGERLSRESNIGDED 87
Query: 62 VD---------------EEN------IENEMPTNVHAIETSNSSLFDELMNEACNQLYPG 121
D EEN ++E+P +V I TSN +F+ELMNEA N LYPG
Sbjct: 88 DDILDLLTDLQGSMIAREENFDDGDGFDDEVPEDVDEINTSN--VFEELMNEARNPLYPG 147
Query: 122 CTLFSSLYFMVKLMHIKVINEWSNKSFDMLLLELLKEAFPNGMKIPFSFYESKRKLRDLR 173
CT FSSL F+VKLMHIKV+N WSNKSFDM LLELLK+AFP G IP S YE+KR+L D+
Sbjct: 148 CTKFSSLNFLVKLMHIKVLNNWSNKSFDM-LLELLKDAFPIGTYIPKSLYEAKRRLCDIG 207
BLAST of Lcy05g015160 vs. ExPASy TrEMBL
Match:
A0A5A7T9T1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G003190 PE=4 SV=1)
HSP 1 Score: 177.6 bits (449), Expect = 4.6e-41
Identity = 101/203 (49.75%), Postives = 124/203 (61.08%), Query Frame = 0
Query: 4 MWQSLDGVEQHLFTYEISPSYSRWIPHGEPVDLSK-------------GFEAPIVDAD-- 63
M Q+LDGVE+HLFTY IS Y++W+ HGE +L++ EA + D D
Sbjct: 1 MTQTLDGVERHLFTYGISSVYNKWVYHGEATNLARFERGATSSEGDTLSREANVGDEDDD 60
Query: 64 -------------------VDEENIENEMPTNVHAIETSNSSLFDELMNEACNQLYPGCT 123
D + ++E P +V ++TSN +F+ELM EA N LY GCT
Sbjct: 61 ILDLLNDLQGSMIAREEDFDDGDGFDDEFPEDVDEMDTSN--IFEELMKEARNPLYHGCT 120
Query: 124 LFSSLYFMVKLMHIKVINEWSNKSFDMLLLELLKEAFPNGMKIPFSFYESKRKLRDLRLG 173
FSSL F+VKLMHIKV+N WSNKSFDM LLELLK+AFP G IP SFYE+KRKL DL LG
Sbjct: 121 KFSSLNFLVKLMHIKVLNNWSNKSFDM-LLELLKDAFPVGTYIPKSFYEAKRKLCDLGLG 180
BLAST of Lcy05g015160 vs. ExPASy TrEMBL
Match:
A0A5A7V6L2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1290G00290 PE=4 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 1.3e-40
Identity = 101/203 (49.75%), Postives = 124/203 (61.08%), Query Frame = 0
Query: 4 MWQSLDGVEQHLFTYEISPSYSRWIPHGEPVDLSK-------------GFEAPIVDAD-- 63
M Q+LD VE+HLFTY IS Y++W+ HGE +L++ EA + D D
Sbjct: 1 MTQTLDRVERHLFTYGISSVYNKWVYHGEATNLARFERGATSSEGDTLSREANVGDEDDD 60
Query: 64 -------------------VDEENIENEMPTNVHAIETSNSSLFDELMNEACNQLYPGCT 123
D + ++E P +V ++TSN +F+ELM EA N LY GCT
Sbjct: 61 ILDLLNDLQGSMIAREEDFDDGDGFDDEFPEDVDEMDTSN--IFEELMKEARNPLYHGCT 120
Query: 124 LFSSLYFMVKLMHIKVINEWSNKSFDMLLLELLKEAFPNGMKIPFSFYESKRKLRDLRLG 173
FSSL F+VKLMHIKV+N WSNKSFDM LLELLK+AFP G IP SFYE+KRKL DL LG
Sbjct: 121 KFSSLNFLVKLMHIKVLNNWSNKSFDM-LLELLKDAFPVGTYIPKSFYEAKRKLCDLGLG 180
BLAST of Lcy05g015160 vs. NCBI nr
Match:
KAA0050152.1 (uncharacterized protein E6C27_scaffold675G001830 [Cucumis melo var. makuwa] >TYK06408.1 uncharacterized protein E5676_scaffold163G001090 [Cucumis melo var. makuwa])
HSP 1 Score: 191.0 bits (484), Expect = 8.3e-45
Identity = 105/197 (53.30%), Postives = 126/197 (63.96%), Query Frame = 0
Query: 1 MNAMWQSLDGVEQHLFTYEISPSYSRWIPHGEPVDLSKGFE------------------- 60
MN+MW+SL+GVE+HL T ISPSY WI HGE V+L +G E
Sbjct: 271 MNSMWESLEGVERHLLTVGISPSYVNWIYHGERVNLPRGLERVATHLHHDDEGTSNLFEQ 330
Query: 61 -----------APIVDADVDEENIENEMPTNVHAIETSNSSLFDELMNEACNQLYPGCTL 120
PI + + EE ENEMP + +T +SLF++LMNEA N+LYPGC+
Sbjct: 331 NEMLDLLNDLQVPIENEEETEEAFENEMPFDDDQQDT--TSLFEDLMNEARNELYPGCSK 390
Query: 121 FSSLYFMVKLMHIKVINEWSNKSFDMLLLELLKEAFPNGMKIPFSFYESKRKLRDLRLGY 168
FSSL F+VKLM IKV+N WSNKSFDM LL++LK AFP G IP SF+E+KRKL DL LGY
Sbjct: 391 FSSLNFLVKLMRIKVLNGWSNKSFDM-LLKMLKAAFPAGTIIPTSFFEAKRKLHDLGLGY 450
BLAST of Lcy05g015160 vs. NCBI nr
Match:
XP_008455800.1 (PREDICTED: uncharacterized protein LOC103495895 [Cucumis melo] >KAA0025951.1 CACTA transposable element [Cucumis melo var. makuwa])
HSP 1 Score: 181.8 bits (460), Expect = 5.0e-42
Identity = 105/205 (51.22%), Postives = 129/205 (62.93%), Query Frame = 0
Query: 2 NAMWQSLDGVEQHLFTYEISPSYSRWIPHGEPVDLSK-------------GFEAPIVDAD 61
N+M Q+LD VE+HLFTY IS Y++W+ HGE +L++ E+ I D D
Sbjct: 28 NSMTQTLDVVERHLFTYGISSVYNKWVYHGEATNLARFERGASSSEGERLSRESNIGDED 87
Query: 62 VD---------------EEN------IENEMPTNVHAIETSNSSLFDELMNEACNQLYPG 121
D EEN ++E+P +V I TSN +F+ELMNEA N LYPG
Sbjct: 88 DDILDLLTDLQGSMIAREENFDDGDGFDDEVPEDVDEINTSN--VFEELMNEARNPLYPG 147
Query: 122 CTLFSSLYFMVKLMHIKVINEWSNKSFDMLLLELLKEAFPNGMKIPFSFYESKRKLRDLR 173
CT FSSL F+VKLMHIKV+N WSNKSFDM LLELLK+AFP G IP S YE+KR+L D+
Sbjct: 148 CTKFSSLNFLVKLMHIKVLNNWSNKSFDM-LLELLKDAFPIGTYIPKSLYEAKRRLCDIG 207
BLAST of Lcy05g015160 vs. NCBI nr
Match:
KAA0038099.1 (uncharacterized protein E6C27_scaffold36G003190 [Cucumis melo var. makuwa])
HSP 1 Score: 177.6 bits (449), Expect = 9.5e-41
Identity = 101/203 (49.75%), Postives = 124/203 (61.08%), Query Frame = 0
Query: 4 MWQSLDGVEQHLFTYEISPSYSRWIPHGEPVDLSK-------------GFEAPIVDAD-- 63
M Q+LDGVE+HLFTY IS Y++W+ HGE +L++ EA + D D
Sbjct: 1 MTQTLDGVERHLFTYGISSVYNKWVYHGEATNLARFERGATSSEGDTLSREANVGDEDDD 60
Query: 64 -------------------VDEENIENEMPTNVHAIETSNSSLFDELMNEACNQLYPGCT 123
D + ++E P +V ++TSN +F+ELM EA N LY GCT
Sbjct: 61 ILDLLNDLQGSMIAREEDFDDGDGFDDEFPEDVDEMDTSN--IFEELMKEARNPLYHGCT 120
Query: 124 LFSSLYFMVKLMHIKVINEWSNKSFDMLLLELLKEAFPNGMKIPFSFYESKRKLRDLRLG 173
FSSL F+VKLMHIKV+N WSNKSFDM LLELLK+AFP G IP SFYE+KRKL DL LG
Sbjct: 121 KFSSLNFLVKLMHIKVLNNWSNKSFDM-LLELLKDAFPVGTYIPKSFYEAKRKLCDLGLG 180
BLAST of Lcy05g015160 vs. NCBI nr
Match:
KAA0063743.1 (uncharacterized protein E6C27_scaffold1290G00290 [Cucumis melo var. makuwa])
HSP 1 Score: 176.0 bits (445), Expect = 2.8e-40
Identity = 101/203 (49.75%), Postives = 124/203 (61.08%), Query Frame = 0
Query: 4 MWQSLDGVEQHLFTYEISPSYSRWIPHGEPVDLSK-------------GFEAPIVDAD-- 63
M Q+LD VE+HLFTY IS Y++W+ HGE +L++ EA + D D
Sbjct: 1 MTQTLDRVERHLFTYGISSVYNKWVYHGEATNLARFERGATSSEGDTLSREANVGDEDDD 60
Query: 64 -------------------VDEENIENEMPTNVHAIETSNSSLFDELMNEACNQLYPGCT 123
D + ++E P +V ++TSN +F+ELM EA N LY GCT
Sbjct: 61 ILDLLNDLQGSMIAREEDFDDGDGFDDEFPEDVDEMDTSN--IFEELMKEARNPLYHGCT 120
Query: 124 LFSSLYFMVKLMHIKVINEWSNKSFDMLLLELLKEAFPNGMKIPFSFYESKRKLRDLRLG 173
FSSL F+VKLMHIKV+N WSNKSFDM LLELLK+AFP G IP SFYE+KRKL DL LG
Sbjct: 121 KFSSLNFLVKLMHIKVLNNWSNKSFDM-LLELLKDAFPVGTYIPKSFYEAKRKLCDLGLG 180
BLAST of Lcy05g015160 vs. NCBI nr
Match:
TYK18968.1 (uncharacterized protein E5676_scaffold418G00580 [Cucumis melo var. makuwa])
HSP 1 Score: 169.1 bits (427), Expect = 3.4e-38
Identity = 94/204 (46.08%), Postives = 124/204 (60.78%), Query Frame = 0
Query: 1 MNAMWQSLDGVEQHLFTYEISPSYSRWIPHGEPVD------------------------- 60
+N W SL+GVE+HL T ISP Y+ W+ HGE +
Sbjct: 119 LNLNWSSLEGVERHLLTIGISPYYTEWVYHGESLSYRGTENFEEGTSSNPFNEGTSSTQF 178
Query: 61 --------LSKGFEAPIV-DADVDEENIENEMPTN--VHAIETSNSSLFDELMNEACNQL 120
+ +API + +++E +E+EM N V+ E + +++F +L+N+A N+L
Sbjct: 179 NEEGDIFGMLNDLQAPIEHEEEIEEFRLEDEMAMNVGVNIDEDTTNNIFQDLLNQARNEL 238
Query: 121 YPGCTLFSSLYFMVKLMHIKVINEWSNKSFDMLLLELLKEAFPN-GMKIPFSFYESKRKL 168
YPGC+ FSSL F+VKLMH+KV+N WSNKSFDM LLELL+ AFP IP SFYE+KRKL
Sbjct: 239 YPGCSEFSSLNFLVKLMHVKVLNGWSNKSFDM-LLELLRAAFPMCNSTIPSSFYEAKRKL 298
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3C5I5 | 4.0e-45 | 53.30 | Phytocyanin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
A0A5A7SP00 | 2.4e-42 | 51.22 | CACTA transposable element OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... | [more] |
A0A1S3C1V3 | 2.4e-42 | 51.22 | uncharacterized protein LOC103495895 OS=Cucumis melo OX=3656 GN=LOC103495895 PE=... | [more] |
A0A5A7T9T1 | 4.6e-41 | 49.75 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7V6L2 | 1.3e-40 | 49.75 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0050152.1 | 8.3e-45 | 53.30 | uncharacterized protein E6C27_scaffold675G001830 [Cucumis melo var. makuwa] >TYK... | [more] |
XP_008455800.1 | 5.0e-42 | 51.22 | PREDICTED: uncharacterized protein LOC103495895 [Cucumis melo] >KAA0025951.1 CAC... | [more] |
KAA0038099.1 | 9.5e-41 | 49.75 | uncharacterized protein E6C27_scaffold36G003190 [Cucumis melo var. makuwa] | [more] |
KAA0063743.1 | 2.8e-40 | 49.75 | uncharacterized protein E6C27_scaffold1290G00290 [Cucumis melo var. makuwa] | [more] |
TYK18968.1 | 3.4e-38 | 46.08 | uncharacterized protein E5676_scaffold418G00580 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |