Lcy05g014870 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g014870
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNase H domain-containing protein
Location	Chr05: 18353449 .. 18354123 (-)
RNA-Seq Expression	Lcy05g014870
Synteny	Lcy05g014870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGACTATTTGGAGTTTTAGGAACAGAGTATTAGCAAACAAAATCAAATCAGATGATAGCAGCATCGTGCGATGGATAAAAAGGAGCCTAGCTGATCAGAAAAAGCGTACCTCTCTCCACTTCCAGGCAGATTATATGCTTGAGAGCCTAAGGAATCATGAGAAATGGACCCCCCTTCCGAATTGCTTGAAATTAAATTCGGACCCCACTTGGAACGAAGATCTTCATACCGGAGGTGTGGGCTGGATTATTCGTGATTCCTTAGGATCTCTTGTCAAAGCTGGTTGCAAACAACTAAAAAGGAGGTGGTCAATCAAATCTATGGAATCGCATGCGATCAAGGAAGGTCTGAAAGCATACCTTGCAAGGAATCGTGTTCGGAGCGCTCCTTTGATTGTAGAAGCTGACGCCTTAGACGTAATTCGGGCGTTGAACCATGAAATTGCCGACATTTTCGAAACAAAAATCATGTTGAACGAAGTGGAGGAAATGGCGGCTGAAGCGAACGTAATGTCTTTTATCAAATGCCCTAGAGCAGGGAATCAAATCGCGCACTTCCTGGCGCGAGCAGCGGCTGGTTTTTCGCCGGTGATCCCTCTGTCGGCCGGTGTTGTCGATAGAATTTTTGTATCTTCCTCTTCTTCCATGCTGGAAGATAGATTTTTTTTGTAA

mRNA sequence

ATGTGGACTATTTGGAGTTTTAGGAACAGAGTATTAGCAAACAAAATCAAATCAGATGATAGCAGCATCGTGCGATGGATAAAAAGGAGCCTAGCTGATCAGAAAAAGCGTACCTCTCTCCACTTCCAGGCAGATTATATGCTTGAGAGCCTAAGGAATCATGAGAAATGGACCCCCCTTCCGAATTGCTTGAAATTAAATTCGGACCCCACTTGGAACGAAGATCTTCATACCGGAGGTGTGGGCTGGATTATTCGTGATTCCTTAGGATCTCTTGTCAAAGCTGGTTGCAAACAACTAAAAAGGAGGTGGTCAATCAAATCTATGGAATCGCATGCGATCAAGGAAGGTCTGAAAGCATACCTTGCAAGGAATCGTGTTCGGAGCGCTCCTTTGATTGTAGAAGCTGACGCCTTAGACGTAATTCGGGCGTTGAACCATGAAATTGCCGACATTTTCGAAACAAAAATCATGTTGAACGAAGTGGAGGAAATGGCGGCTGAAGCGAACGTAATGTCTTTTATCAAATGCCCTAGAGCAGGGAATCAAATCGCGCACTTCCTGGCGCGAGCAGCGGCTGGTTTTTCGCCGGTGATCCCTCTGTCGGCCGGTGTTGTCGATAGAATTTTTGTATCTTCCTCTTCTTCCATGCTGGAAGATAGATTTTTTTTGTAA

Coding sequence (CDS)

ATGTGGACTATTTGGAGTTTTAGGAACAGAGTATTAGCAAACAAAATCAAATCAGATGATAGCAGCATCGTGCGATGGATAAAAAGGAGCCTAGCTGATCAGAAAAAGCGTACCTCTCTCCACTTCCAGGCAGATTATATGCTTGAGAGCCTAAGGAATCATGAGAAATGGACCCCCCTTCCGAATTGCTTGAAATTAAATTCGGACCCCACTTGGAACGAAGATCTTCATACCGGAGGTGTGGGCTGGATTATTCGTGATTCCTTAGGATCTCTTGTCAAAGCTGGTTGCAAACAACTAAAAAGGAGGTGGTCAATCAAATCTATGGAATCGCATGCGATCAAGGAAGGTCTGAAAGCATACCTTGCAAGGAATCGTGTTCGGAGCGCTCCTTTGATTGTAGAAGCTGACGCCTTAGACGTAATTCGGGCGTTGAACCATGAAATTGCCGACATTTTCGAAACAAAAATCATGTTGAACGAAGTGGAGGAAATGGCGGCTGAAGCGAACGTAATGTCTTTTATCAAATGCCCTAGAGCAGGGAATCAAATCGCGCACTTCCTGGCGCGAGCAGCGGCTGGTTTTTCGCCGGTGATCCCTCTGTCGGCCGGTGTTGTCGATAGAATTTTTGTATCTTCCTCTTCTTCCATGCTGGAAGATAGATTTTTTTTGTAA

Protein sequence

MWTIWSFRNRVLANKIKSDDSSIVRWIKRSLADQKKRTSLHFQADYMLESLRNHEKWTPLPNCLKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMESHAIKEGLKAYLARNRVRSAPLIVEADALDVIRALNHEIADIFETKIMLNEVEEMAAEANVMSFIKCPRAGNQIAHFLARAAAGFSPVIPLSAGVVDRIFVSSSSSMLEDRFFL

Homology

[Close]

BLAST of Lcy05g014870 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 64/204 (31.37%), Postives = 104/204 (50.98%), Query Frame = 0


Query: 2   WTIWSFRNRVLANKIKSDDSSIVRWIKRSLADQKKR-TSLHFQ-ADYMLESLR-----NH 61
           W IW  RN+ +   + S+   I   I R + +   R T+L  + A+  L  +R       
Sbjct: 17  WQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTG 76

Query: 62  EKW-TPLPNCLKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMESHA 121
            +W  P  N  KLN+D  W  D +TGG+GWI+RD  G ++KA C+ ++   +I  +E  A
Sbjct: 77  ARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMA 136

Query: 122 IKEGLKAYLARN-----RVRSAPLIVEADALDVIRALNHEIADIFETKIMLNEVEEMAAE 181
           I EGL+A    +     +    P+ +E+D+L+ I  L+ +  D  E   +L E+ +M  +
Sbjct: 137 ICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMED 196

Query: 182 ANVMSFIKCPRAGNQIAHFLARAA 193
             ++S     R  N++AH LAR A
Sbjct: 197 MKIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Lcy05g014870 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-16
Identity = 58/199 (29.15%), Postives = 97/199 (48.74%), Query Frame = 0


Query: 2   WTIWSFRNRVLANKIKSD--------DSSIVRWIKRSLADQKKRTSLHFQADYMLESLRN 61
           W IW  RN+ +   +  +        D  I+    R+   + K T+        +E    
Sbjct: 17  WQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDLHLIRRIEDNTG 76

Query: 62  HEKWTPLPNCLKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMESHA 121
            +   P  N  KLN++  W  D +TGG+GWI+RD  G ++KA C+ ++   +I  +E  A
Sbjct: 77  AQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMA 136

Query: 122 IKEGLKAYLARNRVRSAPLIVEADALDVIRALNHEIADIFETKIMLNEVEEMAAEANVMS 181
           I EGL+A     +    P+ +E+D+L+ I  L+ +  D  E   +L E+ +M  +  ++S
Sbjct: 137 ICEGLRAI---RQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVS 196

Query: 182 FIKCPRAGNQIAHFLARAA 193
                R  N++AH LAR A
Sbjct: 197 MRHISREANKVAHGLARRA 212

[Close]

BLAST of Lcy05g014870 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.6e-16
Identity = 60/195 (30.77%), Postives = 105/195 (53.85%), Query Frame = 0


Query: 2   WTIWSFRNRVLANKIKSDDSSIVRWIKRSLADQ--KKRTSLHFQADYMLESLRNHEKWTP 61
           W IW+ RN V+     S  S++++ + + + +   +  TSL      + ++L N  KW P
Sbjct: 18  WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSL----SMLHKTLNNKLKWEP 77

Query: 62  LP-NCLKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMESHAIKEGL 121
            P +   LN+D +W++  H GG+GWIIR   G +V AG + ++   ++K +E+ AI EGL
Sbjct: 78  PPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGL 137

Query: 122 KAYLARNRVRSAPLIVEADALDVIRALNHEIADIFETKIMLNEVEEMAAEANVMSFIKCP 181
           +       +R  PL +E D+ +V   LN +  D+ +T  ++ E+  +     +++F K  
Sbjct: 138 RNLTNLGVLR--PLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVG 197

Query: 182 RAGNQIAHFLARAAA 194
           R  N  AH LA+ A+
Sbjct: 198 RETNGCAHSLAQRAS 206

[Close]

BLAST of Lcy05g014870 vs. ExPASy TrEMBL
Match: A0A6J5UE59 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23353 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.9e-11
Identity = 57/199 (28.64%), Postives = 96/199 (48.24%), Query Frame = 0


Query: 1    MWTIWSFRNRVLANKIKSDDSSIVRWIKRSLADQKKRTSLHFQADYMLESLRNHEKWTPL 60
            +W IW  RN  + + +++D + +V  + + +++   RT+ H   D   + L+      PL
Sbjct: 1068 LWRIWKARNLAVFDGVQADPTEVVLLLLKQVSE--FRTAKHDLQDLQPQPLQPASSPAPL 1127

Query: 61   PNC------LKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMESHAI 120
              C      LK+N D  W+     GGVGW+IRDS G L+ AG +      S   ME  AI
Sbjct: 1128 SWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMMELLAI 1187

Query: 121  KEGLKAYLARNRVRSAPLIVEADALDVIRALNHEIADIFETKIMLNEVEEMAAEANVMSF 180
            +  L             +IVE+D+   I  LN       + + ++ ++ ++ A  + +SF
Sbjct: 1188 RHALSECA---NFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRVSF 1247

Query: 181  IKCPRAGNQIAHFLARAAA 194
            +  PR+ NQ AH +A  A+
Sbjct: 1248 VFAPRSCNQAAHSVAGFAS 1261

[Close]

BLAST of Lcy05g014870 vs. ExPASy TrEMBL
Match: A0A6J5UF50 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23354 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.9e-11
Identity = 57/199 (28.64%), Postives = 96/199 (48.24%), Query Frame = 0


Query: 1   MWTIWSFRNRVLANKIKSDDSSIVRWIKRSLADQKKRTSLHFQADYMLESLRNHEKWTPL 60
           +W IW  RN  + + +++D + +V  + + +++   RT+ H   D   + L+      PL
Sbjct: 200 LWRIWKARNLAVFDGVQADPTEVVLLLLKQVSE--FRTAKHDLQDLQPQPLQPASSPAPL 259

Query: 61  PNC------LKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMESHAI 120
             C      LK+N D  W+     GGVGW+IRDS G L+ AG +      S   ME  AI
Sbjct: 260 SWCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMMELLAI 319

Query: 121 KEGLKAYLARNRVRSAPLIVEADALDVIRALNHEIADIFETKIMLNEVEEMAAEANVMSF 180
           +  L             +IVE+D+   I  LN       + + ++ ++ ++ A  + +SF
Sbjct: 320 RHALSECA---NFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLSRVSF 379

Query: 181 IKCPRAGNQIAHFLARAAA 194
           +  PR+ NQ AH +A  A+
Sbjct: 380 VFAPRSCNQAAHSVAGFAS 393

[Close]

BLAST of Lcy05g014870 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-16
Identity = 64/204 (31.37%), Postives = 104/204 (50.98%), Query Frame = 0


Query: 2   WTIWSFRNRVLANKIKSDDSSIVRWIKRSLADQKKR-TSLHFQ-ADYMLESLR-----NH 61
           W IW  RN+ +   + S+   I   I R + +   R T+L  + A+  L  +R       
Sbjct: 17  WQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLHLIRRIGDNTG 76

Query: 62  EKW-TPLPNCLKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMESHA 121
            +W  P  N  KLN+D  W  D +TGG+GWI+RD  G ++KA C+ ++   +I  +E  A
Sbjct: 77  ARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMA 136

Query: 122 IKEGLKAYLARN-----RVRSAPLIVEADALDVIRALNHEIADIFETKIMLNEVEEMAAE 181
           I EGL+A    +     +    P+ +E+D+L+ I  L+ +  D  E   +L E+ +M  +
Sbjct: 137 ICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMED 196

Query: 182 ANVMSFIKCPRAGNQIAHFLARAA 193
             ++S     R  N++AH LAR A
Sbjct: 197 MKIVSMRHISREANKVAHDLARRA 220

[Close]

BLAST of Lcy05g014870 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 4.7e-16
Identity = 58/199 (29.15%), Postives = 97/199 (48.74%), Query Frame = 0


Query: 2   WTIWSFRNRVLANKIKSD--------DSSIVRWIKRSLADQKKRTSLHFQADYMLESLRN 61
           W IW  RN+ +   +  +        D  I+    R+   + K T+        +E    
Sbjct: 17  WQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKSTNKDLHLIRRIEDNTG 76

Query: 62  HEKWTPLPNCLKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMESHA 121
            +   P  N  KLN++  W  D +TGG+GWI+RD  G ++KA C+ ++   +I  +E  A
Sbjct: 77  AQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMA 136

Query: 122 IKEGLKAYLARNRVRSAPLIVEADALDVIRALNHEIADIFETKIMLNEVEEMAAEANVMS 181
           I EGL+A     +    P+ +E+D+L+ I  L+ +  D  E   +L E+ +M  +  ++S
Sbjct: 137 ICEGLRAI---RQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVS 196

Query: 182 FIKCPRAGNQIAHFLARAA 193
                R  N++AH LAR A
Sbjct: 197 MRHISREANKVAHGLARRA 212

[Close]

BLAST of Lcy05g014870 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-15
Identity = 60/195 (30.77%), Postives = 105/195 (53.85%), Query Frame = 0


Query: 2   WTIWSFRNRVLANKIKSDDSSIVRWIKRSLADQ--KKRTSLHFQADYMLESLRNHEKWTP 61
           W IW+ RN V+     S  S++++ + + + +   +  TSL      + ++L N  KW P
Sbjct: 18  WVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSL----SMLHKTLNNKLKWEP 77

Query: 62  LP-NCLKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMESHAIKEGL 121
            P +   LN+D +W++  H GG+GWIIR   G +V AG + ++   ++K +E+ AI EGL
Sbjct: 78  PPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGL 137

Query: 122 KAYLARNRVRSAPLIVEADALDVIRALNHEIADIFETKIMLNEVEEMAAEANVMSFIKCP 181
           +       +R  PL +E D+ +V   LN +  D+ +T  ++ E+  +     +++F K  
Sbjct: 138 RNLTNLGVLR--PLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILAFAKVG 197

Query: 182 RAGNQIAHFLARAAA 194
           R  N  AH LA+ A+
Sbjct: 198 RETNGCAHSLAQRAS 206

[Close]

BLAST of Lcy05g014870 vs. NCBI nr
Match: XP_013694754.1 (uncharacterized protein LOC106398790 [Brassica napus])

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-12
Identity = 56/204 (27.45%), Postives = 101/204 (49.51%), Query Frame = 0


Query: 1   MWTIWSFRNRVLANKIKSDDSSIVRWIKRSLADQ---KKRTSLHFQADYMLESLRNHEKW 60
           MW +W  RN +L    +S + +   +++++  D    K R  +  +      +     +W
Sbjct: 81  MWRLWKNRNELL---FRSKEYTAQMYVEKARDDARVWKSREEVKLKEVKPPAAAIPERRW 140

Query: 61  TPLP-NCLKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMESHAIKE 120
           TP P   LK N+D TW ++   GGVGW++RD  G ++ AG K+L    S+   E  A++ 
Sbjct: 141 TPPPQGKLKCNTDATWMQETEVGGVGWVLRDHNGDMLWAGAKRLPDMGSVHETEMEALRW 200

Query: 121 GLKAYLARNRVRSAPLIVEADALDVIRALNHEIADIFETKIMLNEVEEMAAEANVMSFIK 180
            ++  LA    R+  +  E+D+  ++R LN+E       K M+  +    +    +    
Sbjct: 201 AIRT-LAGFGYRN--VTFESDSQVLVRMLNNEEEIWPRVKPMIQAISSSPSGMEKVEVAY 260

Query: 181 CPRAGNQIAHFLARAAAGFSPVIP 201
            PR+GN+IAH +A+    F+ ++P
Sbjct: 261 YPRSGNKIAHRIAKETTMFTSIVP 278

[Close]

BLAST of Lcy05g014870 vs. NCBI nr
Match: KAG6599977.1 (hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-12
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 65  KLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMESHAIKEGLKAYLAR 124
           KLNS  +W+E+   GGV W+I DSLGS +   CK+L+R+W +K +E  A+ EGLK YL  
Sbjct: 7   KLNSYASWSEEAGKGGVSWVIHDSLGSSICIECKELRRKWLVKMLEGKAMIEGLKTYLLI 66

Query: 125 NRVRS---APLIVEADALDVIRALNHEIADIFETKIMLNEVEEMAAEANVMSFIKCP 179
               S    P+I     L++ R LN+   D+ E   +++E+ ++   A ++SF + P
Sbjct: 67  RETVSYSHRPIIF----LELARILNNTHMDLIELSNVVDEIFDLELLAGIISFFQVP 119

[Close]

BLAST of Lcy05g014870 vs. TAIR 10
Match: AT4G09775.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 2.3e-05
Identity = 30/120 (25.00%), Postives = 51/120 (42.50%), Query Frame = 0


Query: 1   MWTIWSFRNRVLANKI--------KSDDSSIVRWIKRSLADQKKRTSLHFQADYMLESLR 60
           MW +W  RN  L  +I        +  +     W++ ++ D     S     D       
Sbjct: 1   MWRLWKSRNEFLFQQIDRFPWKVAQKGEQEATEWVETTINDTANSHSTEQPND---RPSG 60

Query: 61  NHEKWTPLP-NCLKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMES 112
             ++W+P P   LK N D  + +        WIIRDS G ++ +GC +L++ +S    E+
Sbjct: 61  RSKEWSPPPEGYLKCNFDSGYVQGRDYTSTCWIIRDSNGHVIHSGCAKLQQSYSALQAEA 117

[Close]

BLAST of Lcy05g014870 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 6.8e-05
Identity = 41/201 (20.40%), Postives = 87/201 (43.28%), Query Frame = 0


Query: 1   MWTIWSFRNRVLANKIKSDDSSIV--------RWIKRSLADQKKRTSLHFQADYMLESLR 60
           MW IW   N ++ N  ++   + V         W+  ++ ++++  + +           
Sbjct: 48  MWRIWKSGNDLVFNHTRTKFQTTVEMALNDTKEWLDNTMTNEQQNGNRNADPS------- 107

Query: 61  NHEKWTPL-PNCLKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRRWSIKSMES 120
            + KW+P   + LK N D + +E     G+GWI+R+S G++++ G  + + R + +  E 
Sbjct: 108 RNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAEC 167

Query: 121 HAIKEGLKAYLARNRVRSAPLIVEADALDVIRALNHEIADIFETKIMLNEVEEMAAEANV 180
             +   ++A       +   +I E D   + R +N + ++    +  L+ ++        
Sbjct: 168 STLIWAIQASYGFGHKK---VIFEGDNQTITRMINTKSSNP-RLQHFLDTIQSWIPSFES 227

Query: 181 MSFIKCPRAGNQIAHFLARAA 193
           + F    R  N  A FLA+ A
Sbjct: 228 IEFSFKHREQNGCADFLAKQA 237

[Close]

BLAST of Lcy05g014870 vs. TAIR 10
Match: AT1G52990.1 (thioredoxin family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.5e-04
Identity = 38/149 (25.50%), Postives = 73/149 (48.99%), Query Frame = 0


Query: 45  DYMLESLRNHEKWTPLPNC-LKLNSDPTWNEDLHTGGVGWIIRDSLGSLVKAGCKQLKRR 104
           D+++E+   +   + +P+C +K N D + +E     G+GW+IR+S G++++ G  + + R
Sbjct: 31  DFLIET---YVSSSSVPSCRVKCNYDASHHEGDVVSGLGWLIRNSQGTVLECGMGKFQGR 90

Query: 105 WSIKSMESHAIKEGLKAYLARNRVRSAPLIVEADALDVIRALNHEIADIFETKIMLNEVE 164
            + +  E  A+   ++A  A    +   +I E D  +V R +N + +D    K  L+ ++
Sbjct: 91  MTPEEAECSALIWAIQATSAFGYTK---VIFEGDNSNVNRLINTK-SDNPRLKHYLDTIK 150

Query: 165 EMAAEANVMSFIKCPRAGNQIAHFLARAA 193
                     FI   R  NQ A  L + A
Sbjct: 151 SWIPSFTSTEFIFTHREQNQCADTLVKKA 172

The following BLAST results are available for this feature:

BLAST of Lcy05g014870 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g014870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSV1	1.0e-16	31.37	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP26	2.3e-16	29.15	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DNV9	6.6e-16	30.77	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J5UE59	4.9e-11	28.64	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5UF50	4.9e-11	28.64	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23354 PE=4 S...	[more]

BLAST of Lcy05g014870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156777.1	2.1e-16	31.37	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	4.7e-16	29.15	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022155262.1	1.4e-15	30.77	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_013694754.1	1.1e-12	27.45	uncharacterized protein LOC106398790 [Brassica napus]	[more]
KAG6599977.1	4.1e-12	37.61	hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lcy05g014870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09775.1	2.3e-05	25.00	BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily prot...	[more]
AT5G65005.1	6.8e-05	20.40	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G52990.1	1.5e-04	25.50	thioredoxin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 67..192 e-value: 3.0E-16 score: 59.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 62..194 e-value: 3.2E-9 score: 38.9
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 54..194
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 54..194
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 66..190 e-value: 1.33945E-10 score: 55.0128
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 67..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g014870.1	Lcy05g014870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity