Lcy05g014830 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g014830
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	SKP1-like protein
Location	Chr05: 18266802 .. 18268443 (+)
RNA-Seq Expression	Lcy05g014830
Synteny	Lcy05g014830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCATCGAAGAAGAAGATCGTCCTGAAGAGTTCCGATGGTGAAACCTTCGTCGTGGACAAAGCCGTGGCGGTCCAGTTTAAGATAATCGAGGACGTGATCGAGAAAGATGGCGCGGAGACCATGATCCCCTTGCCGAATGTCAAGGGTTCAATTCTTGACAAGGTAATTGAGTTCTGTAAGAAGCATGCTGCCGAGACTGAGGACAGTCTTGAAGCATGGGATGCTGAATTTGTCAAGCTTGATCATGATACTCTCTTTGATCTCATCTTGGTATAAGTTTCTTTTATCCTCCTACCTCTCTGTTTTTGCTTTTCCTTTTTGATATTTATCCTTTTTTTTCACTTGATAATTGATACTTTCTATTTTATCAACACGAAAATCCATATATGATCTTGACTATTTTTAGTTTCTTGACTATTTTTTATTGTAACCAAATCTTTCTAGCTATTTCTCACAATACGTGGCTTTTCAATCTTCAAGATTATCTGGGTGAAACGTGACGACTTGCAAGTGTGGTAGTTCATGCATGGTTAAATATCCACAAATTCCAATTTTCATTCTCAGGCTGCTAACTACTTGAACATCAAGAGCCTGCTGGACCTCACATGCCAGACTGTCGCTGACATGATCAAAGGAAAGACTCCTGAGGAAATTGCAAAGATGTTCAACATCAACAATCATTTCACTACTGAGGAGGAAGAGCAGATTCTAAGGGAGAATCAATGGTCCTTTGAGTAAACATTACCTCTTTCGAACTCGAGACCTTCTATCGTCTCTTACGTCCCGTTTAGATCATCGCCTTTGTTAAATAATATTTATTTGTATGCAAACTGTTGTGACAAAACTCATGAAACAAACACACTCTTGTTCGAGATTAGTATCTAGTTTTTGTGGAATTTCTCTAACCTTTTTAATGGTTAATGTTGGGATATTATCGTCTTTACAAGTATTGTATTCTTTAAAATTTACAGGGAAGAATCCATAGATTTTCGGGGTTGGATCAATTAAAACCCCTTAACTAATAATAGAATTCTTTTCAAAAAAAAAAAAAAAAAACTAATAATAGAATTATGAACTTTTAGAAGTATTATTAGTTTACATGATAATTCACTTGTATGATGAGTCAATTTAGATCTTCCATTAAGATTATTGATTAAGAAAATGAACAGGAGAAGTCACTTTTGCCAATGTGGTTAAAATGACATCGGCAAAGGAGACTTTTGCCAACCTGTTTAAAAAGGTGTTGGCAGAAGTTCATTAAAAATCCCTAATCATTTTTCTTTCTTCTTCATTTCAGCCCACTACGTTTTCTTCTCCTTCTTTACAGCCTCCCTCTCGGATCTGTCGCCCCGTCTACCGTTGTTGAGTTGTCTCGTTGTCGTCGTTGCTGCCTGTGTCGTCTTGTCGCCGCTAGCTAGCTATATCCCTGAGGTTTAGTTGTTTTTTTCTTCTTCTATATTTTATGTTTTTGAGTTTGTTTGCAATGTGTGGAATTCTTATAATTTTAAATTGGAATGGTTATATTGTTAGAATCTTTGTATAGCTAGGTTAGCTTAAAATGTGGTGAATTTGATTGTTTGAGTTTGTGGATAATTGGGGATTTTATTTGTTATATATTGATTAATTGAGAATTTTG

mRNA sequence

ATGTCGTCATCGAAGAAGAAGATCGTCCTGAAGAGTTCCGATGGTGAAACCTTCGTCGTGGACAAAGCCGTGGCGGTCCAGTTTAAGATAATCGAGGACGTGATCGAGAAAGATGGCGCGGAGACCATGATCCCCTTGCCGAATGTCAAGGGTTCAATTCTTGACAAGGTAATTGAGTTCTGTAAGAAGCATGCTGCCGAGACTGAGGACAGTCTTGAAGCATGGGATGCTGAATTTGTCAAGCTTGATCATGATACTCTCTTTGATCTCATCTTGGCTGCTAACTACTTGAACATCAAGAGCCTGCTGGACCTCACATGCCAGACTGTCGCTGACATGATCAAAGGAAAGACTCCTGAGGAAATTGCAAAGATGTTCAACATCAACAATCATTTCACTACTGAGGAGGAAGAGCAGATTCTAAGGGAGAATCAATGGTCCTTTGACCCACTACGTTTTCTTCTCCTTCTTTACAGCCTCCCTCTCGGATCTGTCGCCCCGTCTACCGTTGTTGAGTTGTCTCGTTGTCGTCGTTGCTGCCTGTGTCGTCTTGTCGCCGCTAGCTAGCTATATCCCTGAGGTTTAGTTGTTTTTTTCTTCTTCTATATTTTATGTTTTTGAGTTTGTTTGCAATGTGTGGAATTCTTATAATTTTAAATTGGAATGGTTATATTGTTAGAATCTTTGTATAGCTAGGTTAGCTTAAAATGTGGTGAATTTGATTGTTTGAGTTTGTGGATAATTGGGGATTTTATTTGTTATATATTGATTAATTGAGAATTTTG

Coding sequence (CDS)

ATGTCGTCATCGAAGAAGAAGATCGTCCTGAAGAGTTCCGATGGTGAAACCTTCGTCGTGGACAAAGCCGTGGCGGTCCAGTTTAAGATAATCGAGGACGTGATCGAGAAAGATGGCGCGGAGACCATGATCCCCTTGCCGAATGTCAAGGGTTCAATTCTTGACAAGGTAATTGAGTTCTGTAAGAAGCATGCTGCCGAGACTGAGGACAGTCTTGAAGCATGGGATGCTGAATTTGTCAAGCTTGATCATGATACTCTCTTTGATCTCATCTTGGCTGCTAACTACTTGAACATCAAGAGCCTGCTGGACCTCACATGCCAGACTGTCGCTGACATGATCAAAGGAAAGACTCCTGAGGAAATTGCAAAGATGTTCAACATCAACAATCATTTCACTACTGAGGAGGAAGAGCAGATTCTAAGGGAGAATCAATGGTCCTTTGACCCACTACGTTTTCTTCTCCTTCTTTACAGCCTCCCTCTCGGATCTGTCGCCCCGTCTACCGTTGTTGAGTTGTCTCGTTGTCGTCGTTGCTGCCTGTGTCGTCTTGTCGCCGCTAGCTAG

Protein sequence

MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKKHAAETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFDPLRFLLLLYSLPLGSVAPSTVVELSRCRRCCLCRLVAAS

Homology

[Close]

BLAST of Lcy05g014830 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-46
Identity = 96/159 (60.38%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 4   SKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKK 63
           S KKIVLKSSDGE+F V++AVA++ + I  ++E D  +  +PLPNV   IL KVIE+CK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 64  H-------------AAETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTV 123
           H             AA ++D L+AWDA+F+K+D  TLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 124 ADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           ADMIKGKTPEEI   FNI N FT EEEE++ RENQW+F+
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Lcy05g014830 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.2e-45
Identity = 97/170 (57.06%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 3   SSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCK 62
           S+ +KI LKSSDGE F +D+AVA++ + I+ +IE D  +  IPLPNV   IL KVIE+CK
Sbjct: 2   STVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCK 61

Query: 63  KH--AAE---------------------TEDSLEAWDAEFVKLDHDTLFDLILAANYLNI 122
           +H  AAE                     +++ L+ WD+EF+K+D  TLFDLILAANYLNI
Sbjct: 62  RHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNI 121

Query: 123 KSLLDLTCQTVADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           K LLDLTCQTVADMIKGKTPEEI K FNI N FT EEEE++ RENQW+F+
Sbjct: 122 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Lcy05g014830 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.6e-44
Identity = 99/167 (59.28%), Postives = 116/167 (69.46%), Query Frame = 0


Query: 5   KKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKKH 64
           KK I LKSSDGE F V++AVA++ + I  +IE D A+  IPLPNV   IL KVIE+C KH
Sbjct: 7   KKMITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKH 66

Query: 65  ----------AAE------------TEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSL 124
                     AA+            + + L+ WDA+FVK+D  TLFDLILAANYLNIK L
Sbjct: 67  VHAAAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGL 126

Query: 125 LDLTCQTVADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           LDLTCQTVADMIKGKTPEEI K FNI N FT EEEE+I RENQW+F+
Sbjct: 127 LDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of Lcy05g014830 vs. ExPASy Swiss-Prot
Match: O49484 (SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 4.4e-42
Identity = 89/151 (58.94%), Postives = 111/151 (73.51%), Query Frame = 0


Query: 4   SKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKK 63
           S K IVL SSDG++F V++AVA+Q + I  ++E D     IPL NV+  IL KVIE+CKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 64  HAAE-----TEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMIKGKT 123
           H  +     +E+ L  WD +F+ L+  T+F+LILAANYLNIKSLLDLTCQTVADMIKGKT
Sbjct: 62  HHVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKT 121

Query: 124 PEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           PEEI   FNI N FT EEEE + +ENQW+F+
Sbjct: 122 PEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of Lcy05g014830 vs. ExPASy Swiss-Prot
Match: Q9LNT9 (SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 7.4e-42
Identity = 90/163 (55.21%), Postives = 118/163 (72.39%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           M+ +KK I+LKSSDGE+F +++AVAV+ + I+ +IE D A+  IPLPNV G+IL KVIE+
Sbjct: 1   MAETKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEY 60

Query: 61  CKKH---AAET-----------EDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLT 120
           CKKH   AAE             D L+ WD+EFVK+D  TLFDLILAANYLNI  LLDLT
Sbjct: 61  CKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLT 120

Query: 121 CQTVADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           C+ VAD ++GKTPE++   FNI N +T EEE ++  EN+W+F+
Sbjct: 121 CKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Lcy05g014830 vs. ExPASy TrEMBL
Match: A0A2P5FSP2 (SKP1-like protein OS=Trema orientale OX=63057 GN=TorRG33x02_034460 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 3.8e-49
Identity = 107/156 (68.59%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           MSSS KKIVLKSSDGE+F VD+AVA+Q + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MSSSSKKIVLKSSDGESFEVDEAVALQSQTIKHMIEDDCADNGIPLPNVTSKILAKVIEY 60

Query: 61  CKKHAAET-------EDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADM 120
           CKKH   T       +D L++WDAEFVK+D  TLFDLILAANYLNIK+LLDLTCQTVADM
Sbjct: 61  CKKHVDSTNPDERVADDDLKSWDAEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADM 120

Query: 121 IKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           IKGKTPEEI K FNI N FT EEEE++ RENQW+F+
Sbjct: 121 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of Lcy05g014830 vs. ExPASy TrEMBL
Match: A0A2P5BXH3 (SKP1-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_202080 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 8.5e-49
Identity = 106/156 (67.95%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           MSSS KKIVL+SSDGE+F VD+AVA+Q + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MSSSSKKIVLRSSDGESFEVDEAVALQSQTIKHMIEDDCADNGIPLPNVTSKILAKVIEY 60

Query: 61  CKKHAAET-------EDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADM 120
           CKKH   T       +D L++WDAEFVK+D  TLFDLILAANYLNIK+LLDLTCQTVADM
Sbjct: 61  CKKHVDSTNPDERVADDDLKSWDAEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADM 120

Query: 121 IKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           IKGKTPEEI K FNI N FT EEEE++ RENQW+F+
Sbjct: 121 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of Lcy05g014830 vs. ExPASy TrEMBL
Match: A0A6J1C297 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.5e-48
Identity = 104/154 (67.53%), Postives = 124/154 (80.52%), Query Frame = 0


Query: 3   SSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCK 62
           SS KKIVLKSSDGETF V++AVAV+ + I+ +IE D A+ +IPLPNV  +IL KVIE+CK
Sbjct: 2   SSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCK 61

Query: 63  KH-------AAETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMIK 122
           KH       +   +DSL+ WDAE+VK+D +TLFDLILAANYLNIK LLDLTCQTVADMIK
Sbjct: 62  KHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK 121

Query: 123 GKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           GKTPEEI K FNI N FT EEEE++ RENQW+F+
Sbjct: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lcy05g014830 vs. ExPASy TrEMBL
Match: A0A7C8ZBF3 (SKP1-like protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.5e-48
Identity = 104/158 (65.82%), Postives = 124/158 (78.48%), Query Frame = 0


Query: 3   SSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCK 62
           SS KK+ LKSSDGETF V++AVA++ + I+ +IE D A+  IPLPNV G IL KVIE+CK
Sbjct: 2   SSGKKVTLKSSDGETFEVEEAVALESQTIKHMIEDDCADNAIPLPNVTGKILSKVIEYCK 61

Query: 63  KHA-----------AETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVA 122
           KH            + ++D L+AWDAEFVK+D +TLFDLILAANYLNIKSLLDLTCQTVA
Sbjct: 62  KHVDAAAAKSSDERSSSDDELKAWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVA 121

Query: 123 DMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           DMIKGKTPEEI K FNI N FT EEEE++ RENQW+F+
Sbjct: 122 DMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 159

[Close]

BLAST of Lcy05g014830 vs. ExPASy TrEMBL
Match: A0A6A3C858 (SKP1-like protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009942pilonHSYRG00143 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.5e-48
Identity = 102/155 (65.81%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           M+S+ KKI+L+SSDGETF V++AVAV+ + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MASTSKKIMLRSSDGETFEVEEAVAVESQTIKHMIEDDCADNAIPLPNVTSKILSKVIEY 60

Query: 61  CKKHAA------ETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           C+KH         +ED + AWDA+FVK+D +TLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  CRKHVEAATKENNSEDEIRAWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           KGKTPEEI K FNI N FT EEEE++ RENQW+F+
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lcy05g014830 vs. NCBI nr
Match: POO00815.1 (S-phase kinase-associated protein [Trema orientale])

HSP 1 Score: 204.5 bits (519), Expect = 7.9e-49
Identity = 107/156 (68.59%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           MSSS KKIVLKSSDGE+F VD+AVA+Q + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MSSSSKKIVLKSSDGESFEVDEAVALQSQTIKHMIEDDCADNGIPLPNVTSKILAKVIEY 60

Query: 61  CKKHAAET-------EDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADM 120
           CKKH   T       +D L++WDAEFVK+D  TLFDLILAANYLNIK+LLDLTCQTVADM
Sbjct: 61  CKKHVDSTNPDERVADDDLKSWDAEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADM 120

Query: 121 IKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           IKGKTPEEI K FNI N FT EEEE++ RENQW+F+
Sbjct: 121 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of Lcy05g014830 vs. NCBI nr
Match: PON53488.1 (S-phase kinase-associated protein [Parasponia andersonii])

HSP 1 Score: 203.4 bits (516), Expect = 1.8e-48
Identity = 106/156 (67.95%), Postives = 124/156 (79.49%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           MSSS KKIVL+SSDGE+F VD+AVA+Q + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MSSSSKKIVLRSSDGESFEVDEAVALQSQTIKHMIEDDCADNGIPLPNVTSKILAKVIEY 60

Query: 61  CKKHAAET-------EDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADM 120
           CKKH   T       +D L++WDAEFVK+D  TLFDLILAANYLNIK+LLDLTCQTVADM
Sbjct: 61  CKKHVDSTNPDERVADDDLKSWDAEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADM 120

Query: 121 IKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           IKGKTPEEI K FNI N FT EEEE++ RENQW+F+
Sbjct: 121 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 156

[Close]

BLAST of Lcy05g014830 vs. NCBI nr
Match: XP_022135870.1 (SKP1-like protein 1B [Momordica charantia])

HSP 1 Score: 202.6 bits (514), Expect = 3.0e-48
Identity = 104/154 (67.53%), Postives = 124/154 (80.52%), Query Frame = 0


Query: 3   SSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCK 62
           SS KKIVLKSSDGETF V++AVAV+ + I+ +IE D A+ +IPLPNV  +IL KVIE+CK
Sbjct: 2   SSSKKIVLKSSDGETFEVEEAVAVESQTIKHMIEDDCADNVIPLPNVNSAILAKVIEYCK 61

Query: 63  KH-------AAETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMIK 122
           KH       +   +DSL+ WDAE+VK+D +TLFDLILAANYLNIK LLDLTCQTVADMIK
Sbjct: 62  KHVETDDKDSKAVDDSLKTWDAEYVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIK 121

Query: 123 GKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           GKTPEEI K FNI N FT EEEE++ RENQW+F+
Sbjct: 122 GKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lcy05g014830 vs. NCBI nr
Match: KAG8503746.1 (hypothetical protein CXB51_001739 [Gossypium anomalum])

HSP 1 Score: 202.2 bits (513), Expect = 3.9e-48
Identity = 106/162 (65.43%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           M+S+ +KI+L+SSDGETF V++AVAV+ + I+ +IE D A+  IPLPNV   IL KV+E+
Sbjct: 1   MASTSRKIMLRSSDGETFEVEEAVAVESQTIKHMIEDDCADNEIPLPNVTSKILSKVLEY 60

Query: 61  CKKH---AAETE----DSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADM 120
           CKKH   AA+ E    D L+ WDA+FVK+D +TLFDLILAANYLNIKSLLDLTCQTVADM
Sbjct: 61  CKKHVDAAADKEKTPDDELKTWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADM 120

Query: 121 IKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFDPLRFLL 156
           IKGKTPEEI K FNI N FT EEEE++ RENQW+FD   FL+
Sbjct: 121 IKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFDFYAFLV 162

[Close]

BLAST of Lcy05g014830 vs. NCBI nr
Match: XP_039059674.1 (SKP1-like protein 1A [Hibiscus syriacus] >KAE8724717.1 SKP1-like protein 1B [Hibiscus syriacus])

HSP 1 Score: 201.8 bits (512), Expect = 5.1e-48
Identity = 102/155 (65.81%), Postives = 124/155 (80.00%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           M+S+ KKI+L+SSDGETF V++AVAV+ + I+ +IE D A+  IPLPNV   IL KVIE+
Sbjct: 1   MASTSKKIMLRSSDGETFEVEEAVAVESQTIKHMIEDDCADNAIPLPNVTSKILSKVIEY 60

Query: 61  CKKHAA------ETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMI 120
           C+KH         +ED + AWDA+FVK+D +TLFDLILAANYLNIKSLLDLTCQTVADMI
Sbjct: 61  CRKHVEAATKENNSEDEIRAWDADFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           KGKTPEEI K FNI N FT EEEE++ RENQW+F+
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of Lcy05g014830 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 187.6 bits (475), Expect = 9.3e-48
Identity = 96/159 (60.38%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 4   SKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKK 63
           S KKIVLKSSDGE+F V++AVA++ + I  ++E D  +  +PLPNV   IL KVIE+CK+
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 64  H-------------AAETEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTV 123
           H             AA ++D L+AWDA+F+K+D  TLF+LILAANYLNIK+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 124 ADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           ADMIKGKTPEEI   FNI N FT EEEE++ RENQW+F+
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of Lcy05g014830 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-46
Identity = 97/170 (57.06%), Postives = 120/170 (70.59%), Query Frame = 0


Query: 3   SSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCK 62
           S+ +KI LKSSDGE F +D+AVA++ + I+ +IE D  +  IPLPNV   IL KVIE+CK
Sbjct: 2   STVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCK 61

Query: 63  KH--AAE---------------------TEDSLEAWDAEFVKLDHDTLFDLILAANYLNI 122
           +H  AAE                     +++ L+ WD+EF+K+D  TLFDLILAANYLNI
Sbjct: 62  RHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNI 121

Query: 123 KSLLDLTCQTVADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           K LLDLTCQTVADMIKGKTPEEI K FNI N FT EEEE++ RENQW+F+
Sbjct: 122 KGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of Lcy05g014830 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 172.6 bits (436), Expect = 3.1e-43
Identity = 89/151 (58.94%), Postives = 111/151 (73.51%), Query Frame = 0


Query: 4   SKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKK 63
           S K IVL SSDG++F V++AVA+Q + I  ++E D     IPL NV+  IL KVIE+CKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 64  HAAE-----TEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMIKGKT 123
           H  +     +E+ L  WD +F+ L+  T+F+LILAANYLNIKSLLDLTCQTVADMIKGKT
Sbjct: 62  HHVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKT 121

Query: 124 PEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           PEEI   FNI N FT EEEE + +ENQW+F+
Sbjct: 122 PEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of Lcy05g014830 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 171.8 bits (434), Expect = 5.3e-43
Identity = 90/163 (55.21%), Postives = 118/163 (72.39%), Query Frame = 0


Query: 1   MSSSKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEF 60
           M+ +KK I+LKSSDGE+F +++AVAV+ + I+ +IE D A+  IPLPNV G+IL KVIE+
Sbjct: 1   MAETKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEY 60

Query: 61  CKKH---AAET-----------EDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLT 120
           CKKH   AAE             D L+ WD+EFVK+D  TLFDLILAANYLNI  LLDLT
Sbjct: 61  CKKHVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLT 120

Query: 121 CQTVADMIKGKTPEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           C+ VAD ++GKTPE++   FNI N +T EEE ++  EN+W+F+
Sbjct: 121 CKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

[Close]

BLAST of Lcy05g014830 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 169.1 bits (427), Expect = 3.4e-42
Identity = 87/151 (57.62%), Postives = 110/151 (72.85%), Query Frame = 0


Query: 4   SKKKIVLKSSDGETFVVDKAVAVQFKIIEDVIEKDGAETMIPLPNVKGSILDKVIEFCKK 63
           S K IVL SSDG++F V++AVA+Q + I  ++E D     IPL NV+  IL KVIE+CKK
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 64  HAAE-----TEDSLEAWDAEFVKLDHDTLFDLILAANYLNIKSLLDLTCQTVADMIKGKT 123
           +  +     +E+ L  WD +F+ L+  T+F+LILAANYLNIKSL DLTCQTVADMIKGKT
Sbjct: 62  YHVDEANPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKT 121

Query: 124 PEEIAKMFNINNHFTTEEEEQILRENQWSFD 150
           PEEI   FNI N FT EEEE + +ENQW+F+
Sbjct: 122 PEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

The following BLAST results are available for this feature:

BLAST of Lcy05g014830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39255	1.3e-46	60.38	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q9FHW7	3.2e-45	57.06	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q6PL11	3.6e-44	59.28	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
O49484	4.4e-42	58.94	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1	[more]
Q9LNT9	7.4e-42	55.21	SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1	[more]

BLAST of Lcy05g014830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5FSP2	3.8e-49	68.59	SKP1-like protein OS=Trema orientale OX=63057 GN=TorRG33x02_034460 PE=3 SV=1	[more]
A0A2P5BXH3	8.5e-49	67.95	SKP1-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_202080 PE=3 SV=...	[more]
A0A6J1C297	1.5e-48	67.53	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111007712 PE=3 SV=1	[more]
A0A7C8ZBF3	1.5e-48	65.82	SKP1-like protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1	[more]
A0A6A3C858	2.5e-48	65.81	SKP1-like protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00009942pilonHSYRG0...	[more]

BLAST of Lcy05g014830 vs. NCBI nr


Match Name	E-value	Identity	Description
POO00815.1	7.9e-49	68.59	S-phase kinase-associated protein [Trema orientale]	[more]
PON53488.1	1.8e-48	67.95	S-phase kinase-associated protein [Parasponia andersonii]	[more]
XP_022135870.1	3.0e-48	67.53	SKP1-like protein 1B [Momordica charantia]	[more]
KAG8503746.1	3.9e-48	65.43	hypothetical protein CXB51_001739 [Gossypium anomalum]	[more]
XP_039059674.1	5.1e-48	65.81	SKP1-like protein 1A [Hibiscus syriacus] >KAE8724717.1 SKP1-like protein 1B [Hib...	[more]

BLAST of Lcy05g014830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75950.1	9.3e-48	60.38	S phase kinase-associated protein 1	[more]
AT5G42190.1	2.3e-46	57.06	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT4G34210.1	3.1e-43	58.94	SKP1-like 11	[more]
AT1G20140.1	5.3e-43	55.21	SKP1-like 4	[more]
AT4G34470.1	3.4e-42	57.62	SKP1-like 12	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 5..99 e-value: 1.3E-42 score: 157.5
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 6..65 e-value: 2.3E-21 score: 75.7
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..150 e-value: 1.8E-62 score: 212.2
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 7..66
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 100..146 e-value: 2.6E-24 score: 85.0
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 3..149
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 7..114 e-value: 1.39178E-49 score: 154.672
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 3..149
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 72..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g014830.1	Lcy05g014830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity