Lcy05g014700 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g014700
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr05: 18137528 .. 18137848 (+)
RNA-Seq ExpressionLcy05g014700
SyntenyLcy05g014700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTGTTTCCGTGTCAATTGCGGAGCATCGCATCAAGTGCCAAGGATTCACAAAAATGAGAACAGCAGGAAGGCAAGACAAGTTCAAAGAGATAATGGCATAGTTGGCGATGCGCCCGTCGTAGTAGCGAATGAGAGACAGCATCGACGACGGGTAAGCAGTAAGAAGAGAAAGATGTCGTCTTCGTCGTCGTCGAGGCTCGGACGACAAGGAGGGAGAGATGAGTCAGGTGGCTGGCTTGCGGCATGGTTGGAAGAGGCTGAAGGGCATAGAGAGAAAGATGATGTAAATAAGGAGTTGGAGACATGCAAAGGCTGA

mRNA sequence

ATGGATTGTTTCCGTGTCAATTGCGGAGCATCGCATCAAGTGCCAAGGATTCACAAAAATGAGAACAGCAGGAAGGCAAGACAAGTTCAAAGAGATAATGGCATAGTTGGCGATGCGCCCGTCGTAGTAGCGAATGAGAGACAGCATCGACGACGGGTAAGCAGTAAGAAGAGAAAGATGTCGTCTTCGTCGTCGTCGAGGCTCGGACGACAAGGAGGGAGAGATGAGTCAGGTGGCTGGCTTGCGGCATGGTTGGAAGAGGCTGAAGGGCATAGAGAGAAAGATGATGTAAATAAGGAGTTGGAGACATGCAAAGGCTGA

Coding sequence (CDS)

ATGGATTGTTTCCGTGTCAATTGCGGAGCATCGCATCAAGTGCCAAGGATTCACAAAAATGAGAACAGCAGGAAGGCAAGACAAGTTCAAAGAGATAATGGCATAGTTGGCGATGCGCCCGTCGTAGTAGCGAATGAGAGACAGCATCGACGACGGGTAAGCAGTAAGAAGAGAAAGATGTCGTCTTCGTCGTCGTCGAGGCTCGGACGACAAGGAGGGAGAGATGAGTCAGGTGGCTGGCTTGCGGCATGGTTGGAAGAGGCTGAAGGGCATAGAGAGAAAGATGATGTAAATAAGGAGTTGGAGACATGCAAAGGCTGA

Protein sequence

MDCFRVNCGASHQVPRIHKNENSRKARQVQRDNGIVGDAPVVVANERQHRRRVSSKKRKMSSSSSSRLGRQGGRDESGGWLAAWLEEAEGHREKDDVNKELETCKG
Homology
BLAST of Lcy05g014700 vs. ExPASy TrEMBL
Match: A0A0A0K1A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 1   MDCFRVNCGASHQVPRIHKNENSRKARQVQRDNGIV-GDAPVVVANERQHRRRVSSKKRK 60
           M+CF   CG  +QV RI ++ ++RK R+++RD+ IV G+AP  +   R+  RRV SK+RK
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  MSSSSSSRLGRQGGRDESGGWLAAWLEEAEGHREKDDVNKELE 103
           M  SSS     Q  R E GGWLAAWLEEAEG REKD+V KELE
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEV-KELE 102

BLAST of Lcy05g014700 vs. NCBI nr
Match: KAG6589009.1 (hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-17
Identity = 52/105 (49.52%), Postives = 72/105 (68.57%), Query Frame = 0

Query: 1   MDCFRVNCGASHQVPRIHKNENSRKARQVQRDNGIVGDAPVVVANERQHRRRVSSKKRKM 60
           M CF + CG S QVPRI  ++ S+K  + Q+D+  V +APV ++N+RQH++RV SK+RK 
Sbjct: 1   MACFFLKCGGSRQVPRIQNDDGSKKPMETQQDD-TVDEAPVEISNQRQHQQRVDSKERKT 60

Query: 61  SSSSSSRLGRQGGRDESGGWLAAWLEEAEGHREKDDVNKELETCK 106
           +S       ++GG+ ES GWLAAWLEEAEGH EKD++    E  K
Sbjct: 61  TSL------KRGGKSESSGWLAAWLEEAEGHGEKDEIKALKEAAK 98

BLAST of Lcy05g014700 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_020351 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-15
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 1   MDCFRVNCGASHQVPRIHKNENSRKARQVQRDNGIV-GDAPVVVANERQHRRRVSSKKRK 60
           M+CF   CG  +QV RI ++ ++RK R+++RD+ IV G+AP  +   R+  RRV SK+RK
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  MSSSSSSRLGRQGGRDESGGWLAAWLEEAEGHREKDDVNKELE 103
           M  SSS     Q  R E GGWLAAWLEEAEG REKD+V KELE
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEV-KELE 102

BLAST of Lcy05g014700 vs. NCBI nr
Match: KAG6589008.1 (hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.8e-10
Identity = 47/93 (50.54%), Postives = 66/93 (70.97%), Query Frame = 0

Query: 10  ASHQVPRIHKNENSRKARQVQRDNGIVGDAPVVVANERQHRRRVSSKKRKMSSSSSSRLG 69
           AS QV RI+ +E S+K+R+ QRD+  VGD    + N+R+ +RRV +K++K   + S  L 
Sbjct: 127 ASCQVSRIYDDEGSKKSRKTQRDD-TVGDTLEAIGNKRRRQRRVDNKEQK---TMSFTLR 186

Query: 70  RQGGRDESGGWLAAWLEEAEGHREKDDVNKELE 103
           ++G R+E GGWLAAWLEEAE H EKD++ K LE
Sbjct: 187 QRGERNELGGWLAAWLEEAESHTEKDEI-KALE 214

BLAST of Lcy05g014700 vs. NCBI nr
Match: KAG6572110.1 (hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 4.5e-09
Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = 0

Query: 1   MDCFRVNCGASHQVPRIHKNENSRKARQVQRDNGIVGDAPVVVANER--QHRRRVSSKKR 60
           MDCF V CG S Q  RI  + N RK ++V RD  +V + P     ++  + RRRV   +R
Sbjct: 1   MDCFLV-CGVSRQAMRIQADNNKRKVKKVVRDGIVVDETPTTTKGKKWQRRRRRVGDNER 60

Query: 61  KMSSSSSSRLGR-QGGRDESGGWLAAWLEEAEGHREKDDVNKELETCKG 107
           +     +SRL R  GGR ESGGWLAAWLEEAE    +    K LE  +G
Sbjct: 61  E-----TSRLQRTDGGRVESGGWLAAWLEEAEMKELEKAHAKGLENLRG 103

BLAST of Lcy05g014700 vs. NCBI nr
Match: KAG7011763.1 (Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-04
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 0

Query: 16  RIHKNENSRKARQVQRDNGIVGDAPVVVANER--QHRRRVSSKKRKMSSSSSSRLGR-QG 75
           RI  + N RK ++V RD  +V + P     ++  + RRRV   +R+     +SRL R  G
Sbjct: 227 RIQADNNKRKVKKVVRDGIVVDETPTTTKGKKWQRRRRRVGDNERE-----TSRLQRTDG 286

Query: 76  GRDESGGWLAAWLEEAEGHREKDDVNKELETCKG 107
           GR ESGGWLAAWLEEAE    +    K LE  +G
Sbjct: 287 GRVESGGWLAAWLEEAEMKELEKAHAKGLENLRG 315

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K1A52.0e-1554.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6589009.12.0e-1749.52hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN43248.14.2e-1554.37hypothetical protein Csa_020351 [Cucumis sativus][more]
KAG6589008.11.8e-1050.54hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572110.14.5e-0944.95hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011763.12.6e-0442.55Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g014700.1Lcy05g014700.1mRNA