Lcy05g014600 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g014600
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	glycine-rich protein 2-like
Location	Chr05: 17966073 .. 17967413 (+)
RNA-Seq Expression	Lcy05g014600
Synteny	Lcy05g014600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCACAAAGTACGTTTCTTTTGTATATATATAAAAACCCCATCTCTCTTTTAGAGCGAGAAATTAGAGAGAGACAGAAAAAGCGAAGTGGGTATTAGGGTTTTTCACTTCTCTTCTTCTTCTTCTTCGCTTCCCAGACGACAAATCCACAAATGGGCGAAAGGGTCAGTGGCAAAGTCAAGTGGTTCAGTGACCAGAAGGGCTACGGCTTCATCTCTCCCAACCAGGGAGGTGAAGATCTCTTCGTTCATCAGTCCTCGATTAGATCCGAGGGCTTCCGGAGCCTCGGCGTCGGCGAGGACGTCGAGTTCGTCATCGAGGCCGAGGCCGATGGCCGTTCCAAGGCCGTCGATGTCACTGGCCCGGGAGAGTCTTCTGTGCAGGGCAGTCGCGGCGGCGGCGGCGGCGGAGGGGGTTCTTATGGAGCTGCTGGAGGGGGTGGTTATGGAGGAGGCGGCGGCGGCGGTGGTGGTAGAGGGCGACGCGGTGGTGGGTATGGGTTTAATGGGGGCAGCGGCGGCGGTGGCCGAGGTGGGTACGGCGGCGGAGGTGGCTATGGTGGGGGTTATGGAGGCGGCGGCGGCGGCGGTGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGGCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGAGATCGGTACAGCGGAGGCGGCGGCGGTGGTGGCGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAGTGTCCAAACAGTGGCCGTTGATGATCGTGTTTGTTTGCTTGAATCTGGGGGTGTTTTGTTCGGTTTTCCTTCGCCTTTCATCTCAGTTTTGATCTACTGGGATCTGTAAGGTCATCTTTTAACAGGATTTGAGTAGTAGCCTTTTTTTCTTTTTTTTTTTAATCTCTATGGATTTCCATCAGTTTAGTTTCTGTTTATTGTCTTTTGGGTGTTGATGATGATGATGTTTGTTTGATGGATTTTAGGGGTATTTTATCAGCGATCCTTAGAAAAGAGATGATTCATAGGAGGAGGATTCTTCCTTGATTCTCTGTTTCTTTAACTGTTGATACAAGTATTTCTTTATACAATGTCTTCTTCTGGTTTTGAATGAATGATCCATCTCTCATTTTCTTCTGTAAAATGAATGTGGCTCATGGGTTTTCATCTAATCTTTGTTTACTTTTCCCCCCATTTCATTTTCATTGACAATAAGTCCATTGAATCAATGCAATGGGGACACTACTTTTCTCTGCATTGCTTTGTTCCTATGCAATTATTGTTGGAATGAGCAGAGACTGAGAAAGGGAAATGCAGGCTGGAAAGAAAT

mRNA sequence

ATTCACAAAGTACGTTTCTTTTGTATATATATAAAAACCCCATCTCTCTTTTAGAGCGAGAAATTAGAGAGAGACAGAAAAAGCGAAGTGGGTATTAGGGTTTTTCACTTCTCTTCTTCTTCTTCTTCGCTTCCCAGACGACAAATCCACAAATGGGCGAAAGGGTCAGTGGCAAAGTCAAGTGGTTCAGTGACCAGAAGGGCTACGGCTTCATCTCTCCCAACCAGGGAGGTGAAGATCTCTTCGTTCATCAGTCCTCGATTAGATCCGAGGGCTTCCGGAGCCTCGGCGTCGGCGAGGACGTCGAGTTCGTCATCGAGGCCGAGGCCGATGGCCGTTCCAAGGCCGTCGATGTCACTGGCCCGGGAGAGTCTTCTGTGCAGGGCAGTCGCGGCGGCGGCGGCGGCGGAGGGGGTTCTTATGGAGCTGCTGGAGGGGGTGGTTATGGAGGAGGCGGCGGCGGCGGTGGTGGTAGAGGGCGACGCGGTGGTGGGTATGGGTTTAATGGGGGCAGCGGCGGCGGTGGCCGAGGTGGGTACGGCGGCGGAGGTGGCTATGGTGGGGGTTATGGAGGCGGCGGCGGCGGCGGTGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGGCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGAGATCGGTACAGCGGAGGCGGCGGCGGTGGTGGCGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAGTGTCCAAACAGTGGCCGTTGATGATCGTGTTTGTTTGCTTGAATCTGGGGGTGTTTTGTTCGGTTTTCCTTCGCCTTTCATCTCAGTTTTGATCTACTGGGATCTGTAAGGTCATCTTTTAACAGGATTTGAGTAGTAGCCTTTTTTTCTTTTTTTTTTTAATCTCTATGGATTTCCATCAGTTTAGTTTCTGTTTATTGTCTTTTGGGTGTTGATGATGATGATGTTTGTTTGATGGATTTTAGGGGTATTTTATCAGCGATCCTTAGAAAAGAGATGATTCATAGGAGGAGGATTCTTCCTTGATTCTCTGTTTCTTTAACTGTTGATACAAGTATTTCTTTATACAATGTCTTCTTCTGGTTTTGAATGAATGATCCATCTCTCATTTTCTTCTGTAAAATGAATGTGGCTCATGGGTTTTCATCTAATCTTTGTTTACTTTTCCCCCCATTTCATTTTCATTGACAATAAGTCCATTGAATCAATGCAATGGGGACACTACTTTTCTCTGCATTGCTTTGTTCCTATGCAATTATTGTTGGAATGAGCAGAGACTGAGAAAGGGAAATGCAGGCTGGAAAGAAAT

Coding sequence (CDS)

ATGGGCGAAAGGGTCAGTGGCAAAGTCAAGTGGTTCAGTGACCAGAAGGGCTACGGCTTCATCTCTCCCAACCAGGGAGGTGAAGATCTCTTCGTTCATCAGTCCTCGATTAGATCCGAGGGCTTCCGGAGCCTCGGCGTCGGCGAGGACGTCGAGTTCGTCATCGAGGCCGAGGCCGATGGCCGTTCCAAGGCCGTCGATGTCACTGGCCCGGGAGAGTCTTCTGTGCAGGGCAGTCGCGGCGGCGGCGGCGGCGGAGGGGGTTCTTATGGAGCTGCTGGAGGGGGTGGTTATGGAGGAGGCGGCGGCGGCGGTGGTGGTAGAGGGCGACGCGGTGGTGGGTATGGGTTTAATGGGGGCAGCGGCGGCGGTGGCCGAGGTGGGTACGGCGGCGGAGGTGGCTATGGTGGGGGTTATGGAGGCGGCGGCGGCGGCGGTGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGGCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGAGATCGGTACAGCGGAGGCGGCGGCGGTGGTGGCGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAGTGTCCAAACAGTGGCCGTTGA

Protein sequence

MGERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEADGRSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFNGGSGGGGRGGYGGGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYSGGGGGGGGGGNCYSCGESGHFARECPNSGR

Homology

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BLAST of Lcy05g014600 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.2e-50
Identity = 149/214 (69.63%), Postives = 161/214 (75.23%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEADG 61
           G+R  G VKWFSDQKG+GFI+P+ GGEDLFVHQS IRSEGFRSL  GE VEF +E+  DG
Sbjct: 6   GQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDG 65

Query: 62  RSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRG--------G 121
           R+KAVDVTGP  ++VQG RGGGGGGGG     GGGGYGGG GG GG GR G        G
Sbjct: 66  RTKAVDVTGPDGAAVQGGRGGGGGGGG----RGGGGYGGGSGGYGGGGRGGSRGYGGGDG 125

Query: 122 GYGFNGGSGGGGR-GGYGGGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGG 181
           GYG  GG GGG R GG GGG G GGGYGGGG GGG  CFKCGE+GH ARDC QSG  GGG
Sbjct: 126 GYGGGGGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGG 185

Query: 182 DRYSGGGGGGGGGGNCYSCGESGHFARECPNSGR 207
            R+ GGGGGGGGGG CY CGE GHFAREC + GR
Sbjct: 186 GRF-GGGGGGGGGGGCYKCGEDGHFARECTSGGR 214

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BLAST of Lcy05g014600 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.7e-37
Identity = 124/210 (59.05%), Postives = 142/210 (67.62%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEADG 61
           G+R  G VKWF  QKG+GFI+P+ GG+DLFVHQSSIRSEGFRSL   E VEF +E +  G
Sbjct: 12  GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71

Query: 62  RSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFNGGS 121
           R KA++V+GP  + VQG+ GGGG  GG       GG+GGGGG GGGRG         GGS
Sbjct: 72  RPKAIEVSGPDGAPVQGNSGGGGSSGGR------GGFGGGGGRGGGRG---------GGS 131

Query: 122 GGGGRGGYGGGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSG----SQGGGDRYSG 181
            GGG GG G G       G GGGGG  +CFKCGE GHMAR+C Q G      GGG RY  
Sbjct: 132 YGGGYGGRGSG-------GRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGS 191

Query: 182 GGGGGGGGG--NCYSCGESGHFARECPNSG 206
           GGGGGGGGG  +CYSCGESGHFAR+C + G
Sbjct: 192 GGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

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BLAST of Lcy05g014600 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-35
Identity = 124/221 (56.11%), Postives = 141/221 (63.80%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEADG 61
           GER  G VKWF  QKG+GFI+P+ GG+DLFVHQSSIRSEGFRSL   E VEF +E + + 
Sbjct: 8   GERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNN 67

Query: 62  RSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFNGGS 121
           R KA+DV+GP  + VQG+ GGG  G       G GG+GGG GGG G    GGGYG     
Sbjct: 68  RPKAIDVSGPDGAPVQGNSGGGSSG-------GRGGFGGGRGGGRG---SGGGYG----- 127

Query: 122 GGGGRGGYGGGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQ--------SGSQGGGD 181
                   GGGGGYGG   GGGG GG  C+KCGE GHMARDC +         G  GGG 
Sbjct: 128 --------GGGGGYGG--RGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGG 187

Query: 182 RYSGGG--------GGGGGGGNCYSCGESGHFARECPNSGR 207
            Y GGG        GGGGGGG+CYSCGESGHFAR+C + GR
Sbjct: 188 GYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

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BLAST of Lcy05g014600 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.8e-18
Identity = 109/210 (51.90%), Postives = 130/210 (61.90%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEADGRS 63
           R  GKV WFSD KGYGFI+P+ GGE+LFVHQSSI S+GFRSL +GE VE+ I   +DG++
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64  KAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGY-----GGGGGG---GGGRGRRGGGY 123
           KA++VT PG  S+        G GG+    G  G+      GG GG   GGG GRR GG 
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129

Query: 124 GFNGGSGGGGRGGYGGGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY 183
           G     G  G          GGG  GGGGGGG  C+ CGE GH+A+DC + GS  GG+RY
Sbjct: 130 GECYMCGDVGHFARDCRQS-GGGNSGGGGGGGRPCYSCGEVGHLAKDC-RGGS--GGNRY 189

Query: 184 SGGGGGGGGGGNCYSCGESGHFARECPNSG 206
            GGGG G GG  CY CG  GHFAR+C  +G
Sbjct: 190 GGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215

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BLAST of Lcy05g014600 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-11
Identity = 102/211 (48.34%), Postives = 123/211 (58.29%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEADGRS 63
           R +GKV WF+  KGYGFI+P+ G  +LFVHQSSI SEG+RSL VG+ VEF I   +DG++
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64  KAVDVTGPGESSVQ---GSRGG----GGGGGGSYGAAGGG------GYGGGGGGGGGRGR 123
           KAV+VT PG  S++    SRG     GGGG G Y     G      G GGGGGGG  R R
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 124 RGGGYGFNGGSGGGGRGGYGGGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQG 183
            G G    G +G   R     G G   G   GG  G   C+ CG+ GH+ARDC Q  S G
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDG---CYTCGDVGHVARDCTQK-SVG 189

Query: 184 GGDRYSGGGGGGGGGGNCYSCGESGHFAREC 202
            GD+    G   GG   CY+CG+ GHFAR+C
Sbjct: 190 NGDQ---RGAVKGGNDGCYTCGDVGHFARDC 213

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BLAST of Lcy05g014600 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 4.3e-78
Identity = 192/208 (92.31%), Postives = 194/208 (93.27%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSEGFRSLGVGEDVEF IEAEAD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFNGG 120
           GRSKAVDVTGPGESSVQGSRGGGGGGGGSYG  GGGGY   GGGGGGRGRR GGYGFNGG
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGY---GGGGGGRGRR-GGYGFNGG 120

Query: 121 SGGGGRGGYG--GGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYSGG 180
           SGGGGRG YG  GGGGYGGGYG GGGGGGGACFKCGE GHMARDCYQSGSQGGGDRYS  
Sbjct: 121 SGGGGRGSYGGSGGGGYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYS-- 180

Query: 181 GGGGGGGGNCYSCGESGHFARECPNSGR 207
           GGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 GGGGGGGGNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of Lcy05g014600 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 195/211 (92.42%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSEGFRSLGVGEDVEF IEAEAD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFNGG 120
           GRSKAVDVTGPGESSVQGSRGGGGGGGGSYG  GGGGY   GGGGGGRGRR GGYGFNGG
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGY---GGGGGGRGRR-GGYGFNGG 120

Query: 121 SGGGGRGGYG--GGGGYGGGYG-GGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYS- 180
           SGGGGRG YG  GGGGYGGGYG GGGGGGGGACFKCGE GHMARDCYQSGSQGGGDRYS 
Sbjct: 121 SGGGGRGLYGGSGGGGYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSG 180

Query: 181 -GGGGGGGGGGNCYSCGESGHFARECPNSGR 207
            GGGGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 GGGGGGGGGGGNCYSCGESGHFARECPSSGR 207

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BLAST of Lcy05g014600 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.9e-74
Identity = 191/213 (89.67%), Postives = 197/213 (92.49%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPN GGEDLFVHQSSIRS+GFRSLGVGEDVEF+IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAG---GGGYGGGGGGGGGRGRRGGGYGF 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG+ G  G   GGGYGGGGGGG GR R GGGYGF
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGR-RGGGGYGF 120

Query: 121 NGGSGGGGRGGY-GGGGGYGGG--YGGGGGGGGGACFKCGETGHMARDCYQSGSQ-GGGD 180
           NGGSGGGGRGGY GGGGGYGGG   GGGGGGGGGACFKCGETGHMARDCYQSGSQ GGGD
Sbjct: 121 NGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGD 180

Query: 181 RYSGGGGGGGGGGNCYSCGESGHFARECPNSGR 207
           RY GGGGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 RYGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

[Close]

BLAST of Lcy05g014600 vs. ExPASy TrEMBL
Match: A0A6J1HY03 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111468487 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.8e-66
Identity = 170/209 (81.34%), Postives = 175/209 (83.73%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEAD 60
           M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF+IE EAD
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFN-G 120
           GR KAVDVTGPGESSVQGSR                    GGGGGG RG RGGGYGFN G
Sbjct: 61  GRCKAVDVTGPGESSVQGSR--------------------GGGGGGERGSRGGGYGFNGG 120

Query: 121 GSGGGGRGGYG-GGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY-SG 180
           G GGGGRGGYG GGGGYGGGYGGGGGGGG  CFKCGETGHMARDCYQ GSQGGGDRY  G
Sbjct: 121 GGGGGGRGGYGRGGGGYGGGYGGGGGGGG--CFKCGETGHMARDCYQGGSQGGGDRYGGG 180

Query: 181 GGGGGGGGGNCYSCGESGHFARECPNSGR 207
           GGGGGGGGGNCYSCGESGHFAR+C +SGR
Sbjct: 181 GGGGGGGGGNCYSCGESGHFARDCQSSGR 187

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BLAST of Lcy05g014600 vs. ExPASy TrEMBL
Match: A0A6J1GLV7 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.4e-65
Identity = 166/206 (80.58%), Postives = 172/206 (83.50%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEAD 60
           M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF+IE EAD
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFNGG 120
           GR KA+DVTGPGESSVQGSRGGGGGGGG                   RG RGGGYGFNGG
Sbjct: 61  GRCKAIDVTGPGESSVQGSRGGGGGGGGE------------------RGSRGGGYGFNGG 120

Query: 121 SGGGGRGGYGGGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYSGGGG 180
            GGGGRGGYG G   GGGYGGGGGGGG  CFKCGETGHMARDCYQ GSQGGGDRY  GGG
Sbjct: 121 -GGGGRGGYGRG---GGGYGGGGGGGG--CFKCGETGHMARDCYQGGSQGGGDRY--GGG 180

Query: 181 GGGGGGNCYSCGESGHFARECPNSGR 207
           GGGGGGNCYSCGESGHFAR+C +SGR
Sbjct: 181 GGGGGGNCYSCGESGHFARDCQSSGR 180

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BLAST of Lcy05g014600 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015270.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.8 bits (769), Expect = 8.9e-78
Identity = 192/208 (92.31%), Postives = 194/208 (93.27%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSEGFRSLGVGEDVEF IEAEAD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFNGG 120
           GRSKAVDVTGPGESSVQGSRGGGGGGGGSYG  GGGGY   GGGGGGRGRR GGYGFNGG
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGY---GGGGGGRGRR-GGYGFNGG 120

Query: 121 SGGGGRGGYG--GGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYSGG 180
           SGGGGRG YG  GGGGYGGGYG GGGGGGGACFKCGE GHMARDCYQSGSQGGGDRYS  
Sbjct: 121 SGGGGRGSYGGSGGGGYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYS-- 180

Query: 181 GGGGGGGGNCYSCGESGHFARECPNSGR 207
           GGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 GGGGGGGGNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of Lcy05g014600 vs. NCBI nr
Match: XP_023529790.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.7 bits (766), Expect = 2.0e-77
Identity = 191/208 (91.83%), Postives = 194/208 (93.27%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSEGFRSLGVGEDVEF IEAEAD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFNGG 120
           GRSKAVDVTGPGESSVQGSRGGGGGGGG+YG  GGGGY   GGGGGGRGRR GGYGFNGG
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGTYGGGGGGGY---GGGGGGRGRR-GGYGFNGG 120

Query: 121 SGGGGRGGYG--GGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYSGG 180
           SGGGGRG YG  GGGGYGGGYG GGGGGGGACFKCGE GHMARDCYQSGSQGGGDRYS  
Sbjct: 121 SGGGGRGSYGGSGGGGYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYS-- 180

Query: 181 GGGGGGGGNCYSCGESGHFARECPNSGR 207
           GGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 GGGGGGGGNCYSCGESGHFARECPSSGR 202

[Close]

BLAST of Lcy05g014600 vs. NCBI nr
Match: XP_022989065.1 (glycine-rich protein 2-like [Cucurbita maxima])

HSP 1 Score: 299.3 bits (765), Expect = 2.6e-77
Identity = 195/211 (92.42%), Postives = 197/211 (93.36%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSEGFRSLGVGEDVEF IEAEAD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFNGG 120
           GRSKAVDVTGPGESSVQGSRGGGGGGGGSYG  GGGGY   GGGGGGRGRR GGYGFNGG
Sbjct: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGY---GGGGGGRGRR-GGYGFNGG 120

Query: 121 SGGGGRGGYG--GGGGYGGGYG-GGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYS- 180
           SGGGGRG YG  GGGGYGGGYG GGGGGGGGACFKCGE GHMARDCYQSGSQGGGDRYS 
Sbjct: 121 SGGGGRGLYGGSGGGGYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSG 180

Query: 181 -GGGGGGGGGGNCYSCGESGHFARECPNSGR 207
            GGGGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 GGGGGGGGGGGNCYSCGESGHFARECPSSGR 207

[Close]

BLAST of Lcy05g014600 vs. NCBI nr
Match: XP_011658593.1 (glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_020571 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 1.0e-73
Identity = 191/213 (89.67%), Postives = 197/213 (92.49%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEAD 60
           MGERVSGKVKWFSDQKGYGFISPN GGEDLFVHQSSIRS+GFRSLGVGEDVEF+IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAG---GGGYGGGGGGGGGRGRRGGGYGF 120
           GRSKAVDVTGPGE+SVQGSRGGGGGGGG+ G  G   GGGYGGGGGGG GR R GGGYGF
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGR-RGGGGYGF 120

Query: 121 NGGSGGGGRGGY-GGGGGYGGG--YGGGGGGGGGACFKCGETGHMARDCYQSGSQ-GGGD 180
           NGGSGGGGRGGY GGGGGYGGG   GGGGGGGGGACFKCGETGHMARDCYQSGSQ GGGD
Sbjct: 121 NGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGD 180

Query: 181 RYSGGGGGGGGGGNCYSCGESGHFARECPNSGR 207
           RY GGGGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 RYGGGGGGGGGGGNCYSCGESGHFARECPSSGR 212

[Close]

BLAST of Lcy05g014600 vs. NCBI nr
Match: XP_038888820.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-72
Identity = 187/209 (89.47%), Postives = 194/209 (92.82%), Query Frame = 0


Query: 1   MGERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEAD 60
           M ERVSGKVKWFSDQKGYGFISPN GGEDLFVHQSSIRS+GFRSLGVGEDVEF+IEAE+D
Sbjct: 1   MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61  GRSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFNGG 120
           GRSKAVDVTGPGE+SVQGSRGGG GGGG Y ++GGGGYGGGGGGG GR R GGGYGFNGG
Sbjct: 61  GRSKAVDVTGPGEASVQGSRGGGSGGGGGY-SSGGGGYGGGGGGGRGR-RGGGGYGFNGG 120

Query: 121 SGGGGRGGY-GGGGGYGGG--YGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYSG 180
           SGGGGRGGY GGGGGYGGG   GGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY  
Sbjct: 121 SGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY-- 180

Query: 181 GGGGGGGGGNCYSCGESGHFARECPNSGR 207
            GGGGGGGGNCYSCGESGHFARECP+SGR
Sbjct: 181 -GGGGGGGGNCYSCGESGHFARECPSSGR 204

[Close]

BLAST of Lcy05g014600 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 156.8 bits (395), Expect = 1.9e-38
Identity = 124/210 (59.05%), Postives = 142/210 (67.62%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEADG 61
           G+R  G VKWF  QKG+GFI+P+ GG+DLFVHQSSIRSEGFRSL   E VEF +E +  G
Sbjct: 12  GDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSG 71

Query: 62  RSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFNGGS 121
           R KA++V+GP  + VQG+ GGGG  GG       GG+GGGGG GGGRG         GGS
Sbjct: 72  RPKAIEVSGPDGAPVQGNSGGGGSSGGR------GGFGGGGGRGGGRG---------GGS 131

Query: 122 GGGGRGGYGGGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSG----SQGGGDRYSG 181
            GGG GG G G       G GGGGG  +CFKCGE GHMAR+C Q G      GGG RY  
Sbjct: 132 YGGGYGGRGSG-------GRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGS 191

Query: 182 GGGGGGGGG--NCYSCGESGHFARECPNSG 206
           GGGGGGGGG  +CYSCGESGHFAR+C + G
Sbjct: 192 GGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

[Close]

BLAST of Lcy05g014600 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-36
Identity = 124/221 (56.11%), Postives = 141/221 (63.80%), Query Frame = 0


Query: 2   GERVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEADG 61
           GER  G VKWF  QKG+GFI+P+ GG+DLFVHQSSIRSEGFRSL   E VEF +E + + 
Sbjct: 8   GERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNN 67

Query: 62  RSKAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGYGGGGGGGGGRGRRGGGYGFNGGS 121
           R KA+DV+GP  + VQG+ GGG  G       G GG+GGG GGG G    GGGYG     
Sbjct: 68  RPKAIDVSGPDGAPVQGNSGGGSSG-------GRGGFGGGRGGGRG---SGGGYG----- 127

Query: 122 GGGGRGGYGGGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQ--------SGSQGGGD 181
                   GGGGGYGG   GGGG GG  C+KCGE GHMARDC +         G  GGG 
Sbjct: 128 --------GGGGGYGG--RGGGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGG 187

Query: 182 RYSGGG--------GGGGGGGNCYSCGESGHFARECPNSGR 207
            Y GGG        GGGGGGG+CYSCGESGHFAR+C + GR
Sbjct: 188 GYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of Lcy05g014600 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-19
Identity = 109/210 (51.90%), Postives = 130/210 (61.90%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEADGRS 63
           R  GKV WFSD KGYGFI+P+ GGE+LFVHQSSI S+GFRSL +GE VE+ I   +DG++
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64  KAVDVTGPGESSVQGSRGGGGGGGGSYGAAGGGGY-----GGGGGG---GGGRGRRGGGY 123
           KA++VT PG  S+        G GG+    G  G+      GG GG   GGG GRR GG 
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGE 129

Query: 124 GFNGGSGGGGRGGYGGGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRY 183
           G     G  G          GGG  GGGGGGG  C+ CGE GH+A+DC + GS  GG+RY
Sbjct: 130 GECYMCGDVGHFARDCRQS-GGGNSGGGGGGGRPCYSCGEVGHLAKDC-RGGS--GGNRY 189

Query: 184 SGGGGGGGGGGNCYSCGESGHFARECPNSG 206
            GGGG G GG  CY CG  GHFAR+C  +G
Sbjct: 190 GGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215

[Close]

BLAST of Lcy05g014600 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 102/211 (48.34%), Postives = 123/211 (58.29%), Query Frame = 0


Query: 4   RVSGKVKWFSDQKGYGFISPNQGGEDLFVHQSSIRSEGFRSLGVGEDVEFVIEAEADGRS 63
           R +GKV WF+  KGYGFI+P+ G  +LFVHQSSI SEG+RSL VG+ VEF I   +DG++
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64  KAVDVTGPGESSVQ---GSRGG----GGGGGGSYGAAGGG------GYGGGGGGGGGRGR 123
           KAV+VT PG  S++    SRG     GGGG G Y     G      G GGGGGGG  R R
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 124 RGGGYGFNGGSGGGGRGGYGGGGGYGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQG 183
            G G    G +G   R     G G   G   GG  G   C+ CG+ GH+ARDC Q  S G
Sbjct: 130 GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDG---CYTCGDVGHVARDCTQK-SVG 189

Query: 184 GGDRYSGGGGGGGGGGNCYSCGESGHFAREC 202
            GD+    G   GG   CY+CG+ GHFAR+C
Sbjct: 190 NGDQ---RGAVKGGNDGCYTCGDVGHFARDC 213

The following BLAST results are available for this feature:

BLAST of Lcy05g014600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27484	6.2e-50	69.63	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q38896	2.7e-37	59.05	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q41188	1.9e-35	56.11	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q94C69	2.8e-18	51.90	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	1.5e-11	48.34	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of Lcy05g014600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERG9	4.3e-78	92.31	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 S...	[more]
A0A6J1JLC0	1.2e-77	92.42	glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=...	[more]
A0A0A0K4M5	4.9e-74	89.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1	[more]
A0A6J1HY03	3.8e-66	81.34	glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111468487 PE=4 SV=...	[more]
A0A6J1GLV7	1.4e-65	80.58	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 S...	[more]

BLAST of Lcy05g014600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928350.1	8.9e-78	92.31	glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain...	[more]
XP_023529790.1	2.0e-77	91.83	glycine-rich protein 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989065.1	2.6e-77	92.42	glycine-rich protein 2-like [Cucurbita maxima]	[more]
XP_011658593.1	1.0e-73	89.67	glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_02...	[more]
XP_038888820.1	1.1e-72	89.47	glycine-rich protein 2-like [Benincasa hispida]	[more]

BLAST of Lcy05g014600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21060.1	1.9e-38	59.05	glycine-rich protein 2B	[more]
AT4G38680.1	1.4e-36	56.11	glycine rich protein 2	[more]
AT2G17870.1	2.0e-19	51.90	cold shock domain protein 3	[more]
AT4G36020.1	1.1e-12	48.34	cold shock domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 28..37 score: 64.04 coord: 43..61 score: 40.98 coord: 7..22 score: 63.69
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 6..70 e-value: 7.9E-24 score: 83.3
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 4..70 score: 30.326115
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 5..70 e-value: 4.65111E-24 score: 88.4046
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 187..203 e-value: 2.0E-5 score: 34.1 coord: 149..165 e-value: 1.4E-5 score: 34.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 149..163 e-value: 2.4E-7 score: 30.5 coord: 187..203 e-value: 2.4E-7 score: 30.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 188..203 score: 11.317481
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 150..163 score: 11.053757
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 6..71 e-value: 4.9E-22 score: 89.2
None	No IPR available	GENE3D	2.40.50.140		coord: 2..81 e-value: 4.6E-27 score: 96.0
None	No IPR available	GENE3D	4.10.60.10		coord: 145..174 e-value: 1.9E-7 score: 32.6 coord: 183..206 e-value: 3.9E-7 score: 31.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..87
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..206
None	No IPR available	PANTHER	PTHR46565:SF8	COLD SHOCK PROTEIN 2	coord: 1..206
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 18..37
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 3..70
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 141..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g014600.1	Lcy05g014600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding