Lcy05g014490 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g014490
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr05: 17872184 .. 17873462 (+)
RNA-Seq Expression	Lcy05g014490
Synteny	Lcy05g014490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTGGAGAAGCATTCTTTGGGGGAGAGATCTTTTCAAAGTTGGGATGCGATGGAGAGTGGGGAATGGTAGGCATATCAGGATTGCTGAAGACCCCTGGCTTGGGGAAGCAGGACCTTCAAAGCCTGTGTTTGTGCCAGAGGAGCTTAAAGAAGCCTACGTAGCAAGCTTAATTGACGAAGGAGGCAACTGGAGGGAGAACGAGATTAGGAAACTTTTCATCCCTTCGGAAGCTGAGAGTATCTTAAATATTCCTCTGAGTAGGAGGGACTCAAATGATGAAATCTTTTGGGGTCCGGATCTGAAAGGAAACTTTACCGTCAAAAGCGCCTATTTCAGCTCAAACCTCTTCATCAGCAAGGGATCCATCTTCTTCCAATCCCTTGATCCATAAAGCTTTGTGGAAAGATTTTTGGAAATCCAAAGTCATTCCAAAAGAGAAGATCTGTGCTTGGCGAGCCATCCAAAATATCCTCCCATCTCAAGGCAATATTATAGCTAGAGGAATTGAAACTAACCCCTTTTGTTTTCTTTGCAGGTCAAAAAAGGAGTCGGTCAGGCATTGCATATGGGACTGTAAGATTTCTAAACAAGTGTGGACACACTACTTCCCTATCTTACGTAACATTGCTGATTTTTTCAGGGAAGACATGCCGTTTGAAAAATGGAGGCTTCTAGCTGAAAATCTAGATGAAGATGATCGTGGGAAAGTTATCAGCATAATGTGGAATATTTGGAATTACAGGAACTTGATAAAGCAAAATCCGAATAAGCCAGATCCCAACTCAATTATCAGATCAGTGAAAGCTTTTTGGGAAGGAAGATCGTACCTGAGTGCTGTCAACAAAGAGCCTTCAAGATTTAAGAGCTCCTTGAGTCAGAGCTGGTCCTTCCCTCCTCGAAACTTTTGGAAAATTAATACAGATGCATCATGGTCTGAAGACAAAGGAATTGGGGGAATTGGATGGATTGCCCGTGACTCACTAGGATCTTTTATCTGTGCCGGCTTCAAGAGGATGAAGAGAAAATGGTCGATTCTTAGCCTGGAGTTGAAAGCAATAGAAGAAAGTTTGTTACTTGCAGAGATTGGAAATCCCCTCCCTAGGATCATTGTCGAATCGGATTATGCTTTCGCGATTGCCATCCTTAACCGTGAGTCTGAAGTCTTCTCGGAGAGCAGGTTGGTGGCGAATGATGTGGAGATTGCGGCAGAGCTGGTCGGAAGTGTCGAATATAGCTTTAGCCGACGGGAATTCAACATTGCTGGGAATACATGA

mRNA sequence

ATGACCTGGAGAAGCATTCTTTGGGGGAGAGATCTTTTCAAAGTTGGGATGCGATGGAGAGTGGGGAATGGTAGGCATATCAGGATTGCTGAAGACCCCTGGCTTGGGGAAGCAGGACCTTCAAAGCCTGTGTTTGTGCCAGAGGAGCTTAAAGAAGCCTACGTAGCAAGCTTAATTGACGAAGGAGGCAACTGGAGGGAGAACGAGATTAGGAAACTTTTCATCCCTTCGGAAGCTGAGAGTATCTTAAATATTCCTCTGAGTAGGAGGGACTCAAATGATGAAATCTTTTGGGGTCCGGATCTGAAAGGAAACTTTACCGTCAAAAAAGGAGTCGGTCAGGCATTGCATATGGGACTGGAAGACATGCCGTTTGAAAAATGGAGGCTTCTAGCTGAAAATCTAGATGAAGATGATCGTGGGAAAGTTATCAGCATAATGTGGAATATTTGGAATTACAGGAACTTGATAAAGCAAAATCCGAATAAGCCAGATCCCAACTCAATTATCAGATCAGTGAAAGCTTTTTGGGAAGGAAGATCGTACCTGAGTGCTGTCAACAAAGAGCCTTCAAGATTTAAGAGCTCCTTGAGTCAGAGCTGGTCCTTCCCTCCTCGAAACTTTTGGAAAATTAATACAGATGCATCATGGTCTGAAGACAAAGGAATTGGGGGAATTGGATGGATTGCCCGTGACTCACTAGGATCTTTTATCTGTGCCGGCTTCAAGAGGATGAAGAGAAAATGGTCGATTCTTAGCCTGGAGTTGAAAGCAATAGAAGAAAGTTTGTTACTTGCAGAGATTGGAAATCCCCTCCCTAGGATCATTGTCGAATCGGATTATGCTTTCGCGATTGCCATCCTTAACCGTGAGTCTGAAGTCTTCTCGGAGAGCAGGTTGGTGGCGAATGATGTGGAGATTGCGGCAGAGCTGGTCGGAAGTGTCGAATATAGCTTTAGCCGACGGGAATTCAACATTGCTGGGAATACATGA

Coding sequence (CDS)

ATGACCTGGAGAAGCATTCTTTGGGGGAGAGATCTTTTCAAAGTTGGGATGCGATGGAGAGTGGGGAATGGTAGGCATATCAGGATTGCTGAAGACCCCTGGCTTGGGGAAGCAGGACCTTCAAAGCCTGTGTTTGTGCCAGAGGAGCTTAAAGAAGCCTACGTAGCAAGCTTAATTGACGAAGGAGGCAACTGGAGGGAGAACGAGATTAGGAAACTTTTCATCCCTTCGGAAGCTGAGAGTATCTTAAATATTCCTCTGAGTAGGAGGGACTCAAATGATGAAATCTTTTGGGGTCCGGATCTGAAAGGAAACTTTACCGTCAAAAAAGGAGTCGGTCAGGCATTGCATATGGGACTGGAAGACATGCCGTTTGAAAAATGGAGGCTTCTAGCTGAAAATCTAGATGAAGATGATCGTGGGAAAGTTATCAGCATAATGTGGAATATTTGGAATTACAGGAACTTGATAAAGCAAAATCCGAATAAGCCAGATCCCAACTCAATTATCAGATCAGTGAAAGCTTTTTGGGAAGGAAGATCGTACCTGAGTGCTGTCAACAAAGAGCCTTCAAGATTTAAGAGCTCCTTGAGTCAGAGCTGGTCCTTCCCTCCTCGAAACTTTTGGAAAATTAATACAGATGCATCATGGTCTGAAGACAAAGGAATTGGGGGAATTGGATGGATTGCCCGTGACTCACTAGGATCTTTTATCTGTGCCGGCTTCAAGAGGATGAAGAGAAAATGGTCGATTCTTAGCCTGGAGTTGAAAGCAATAGAAGAAAGTTTGTTACTTGCAGAGATTGGAAATCCCCTCCCTAGGATCATTGTCGAATCGGATTATGCTTTCGCGATTGCCATCCTTAACCGTGAGTCTGAAGTCTTCTCGGAGAGCAGGTTGGTGGCGAATGATGTGGAGATTGCGGCAGAGCTGGTCGGAAGTGTCGAATATAGCTTTAGCCGACGGGAATTCAACATTGCTGGGAATACATGA

Protein sequence

MTWRSILWGRDLFKVGMRWRVGNGRHIRIAEDPWLGEAGPSKPVFVPEELKEAYVASLIDEGGNWRENEIRKLFIPSEAESILNIPLSRRDSNDEIFWGPDLKGNFTVKKGVGQALHMGLEDMPFEKWRLLAENLDEDDRGKVISIMWNIWNYRNLIKQNPNKPDPNSIIRSVKAFWEGRSYLSAVNKEPSRFKSSLSQSWSFPPRNFWKINTDASWSEDKGIGGIGWIARDSLGSFICAGFKRMKRKWSILSLELKAIEESLLLAEIGNPLPRIIVESDYAFAIAILNRESEVFSESRLVANDVEIAAELVGSVEYSFSRREFNIAGNT

Homology

[Close]

BLAST of Lcy05g014490 vs. ExPASy TrEMBL
Match: Q8S5K1 (Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24.23 PE=4 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 5.3e-30
Identity = 104/373 (27.88%), Postives = 167/373 (44.77%), Query Frame = 0


Query: 3    WRSILWGRDLFKVGMRWRVGNGRHIRIAEDPWLGEAGPSKPVFVPEELKEAYVASLIDEG 62
            WR+I +G +L K G+ WR+GNG+ +R+  DPW+  +   +P+      +  +V+ LID+ 
Sbjct: 1478 WRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAKRNCRLRWVSDLIDQS 1537

Query: 63   GNWRENEIRKLFIPSEAESILNIPLSRRDSNDEIFWGPDLKGNFTVKKGVGQALHMGLED 122
            G+W  ++I + F+P +AE+ILNI LS R  +D I W PD  G F+V+     A+ +   D
Sbjct: 1538 GSWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAYHLAVALAHVD 1597

Query: 123  MPFEK------------WRL----------------------LAENLDEDDRGKVISIMW 182
                             W+                       L E    +D+  ++ ++W
Sbjct: 1598 EGSSSSGNGNSRAWNALWKCNAPQKLNPLSNIRNGDPKVILDLLEQSQPEDQVMLLMVLW 1657

Query: 183  NIWNYRNLIKQNPNKPDPNSII--RSVKAF---------------WEGRSYLSAVNKEPS 242
             IW+ RN I     KP P  ++  R ++++                +G+  +  V K+  
Sbjct: 1658 RIWHTRNEIVH--GKPAPGMLVSKRFIESYVLSLAEIKQHPQASPEKGKHVVDVVQKKLH 1717

Query: 243  RFKSS---LSQSWSFPPRNFWKINTDASWSEDKGIGGIGWIARDSLGSFICAGFKRMKRK 302
              K S   +   W  P     K+N D S+ E  G GGIG + R+  G  I A    +   
Sbjct: 1718 SIKRSREPVPDKWLKPLPGSMKLNVDGSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCC 1777

Query: 303  WSILSLELKAIEESLLLAEIGNPLPRIIVESDYAFAIAILNRESEVFSESRLVANDVEIA 322
             S L  EL A  + L LA     LP I++E+D    I +    +   SE   +    EI 
Sbjct: 1778 SSALETELLACRDGLALALQWTLLP-IVIETDCLAMIHLFRDATGAKSELAFLIR--EID 1837

[Close]

BLAST of Lcy05g014490 vs. ExPASy TrEMBL
Match: Q33AJ4 (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g09610 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.3e-30
Identity = 104/373 (27.88%), Postives = 167/373 (44.77%), Query Frame = 0


Query: 3    WRSILWGRDLFKVGMRWRVGNGRHIRIAEDPWLGEAGPSKPVFVPEELKEAYVASLIDEG 62
            WR+I +G +L K G+ WR+GNG+ +R+  DPW+  +   +P+      +  +V+ LID+ 
Sbjct: 1443 WRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAKRNCRLRWVSDLIDQS 1502

Query: 63   GNWRENEIRKLFIPSEAESILNIPLSRRDSNDEIFWGPDLKGNFTVKKGVGQALHMGLED 122
            G+W  ++I + F+P +AE+ILNI LS R  +D I W PD  G F+V+     A+ +   D
Sbjct: 1503 GSWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAYHLAVALAHVD 1562

Query: 123  MPFEK------------WRL----------------------LAENLDEDDRGKVISIMW 182
                             W+                       L E    +D+  ++ ++W
Sbjct: 1563 EGSSSSGNGNSRAWNALWKCNAPQKLNPLSNIRNGDPKVILDLLEQSQPEDQVMLLMVLW 1622

Query: 183  NIWNYRNLIKQNPNKPDPNSII--RSVKAF---------------WEGRSYLSAVNKEPS 242
             IW+ RN I     KP P  ++  R ++++                +G+  +  V K+  
Sbjct: 1623 RIWHTRNEIVH--GKPAPGMLVSKRFIESYVLSLAEIKQHPQASPEKGKHVVDVVQKKLH 1682

Query: 243  RFKSS---LSQSWSFPPRNFWKINTDASWSEDKGIGGIGWIARDSLGSFICAGFKRMKRK 302
              K S   +   W  P     K+N D S+ E  G GGIG + R+  G  I A    +   
Sbjct: 1683 SIKRSREPVPDKWLKPLPGSMKLNVDGSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCC 1742

Query: 303  WSILSLELKAIEESLLLAEIGNPLPRIIVESDYAFAIAILNRESEVFSESRLVANDVEIA 322
             S L  EL A  + L LA     LP I++E+D    I +    +   SE   +    EI 
Sbjct: 1743 SSALETELLACRDGLALALQWTLLP-IVIETDCLAMIHLFRDATGAKSELAFLIR--EID 1802

[Close]

BLAST of Lcy05g014490 vs. ExPASy TrEMBL
Match: B8AHI8 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_07152 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-25
Identity = 90/327 (27.52%), Postives = 149/327 (45.57%), Query Frame = 0


Query: 4   RSILWGRDLFKVGMRWRVGNGRHIRIAEDPWLGEAGPSKPVFVPEELKEAYVASLIDEGG 63
           ++I +G +L K G+ WRVGNG  IR+  DPW+      +P+ +    +  +V+ ++   G
Sbjct: 287 KAIEYGLELLKKGIIWRVGNGGSIRLWRDPWIPRNMSRRPITMKRNNRLKWVSDILKPDG 346

Query: 64  NWRENEIRKLFIPSEAESILNIPLSRRDSNDEIFWGPDLKGNFTVKKGVGQALHMG---- 123
           +W EN +  +F+P + E IL I +S R   D + W PD  G F+V+     A+ +     
Sbjct: 347 SWDENLVSAIFLPVDVEEILKIKISSRQEEDFVAWFPDRLGRFSVRSAYQLAMQIARLDE 406

Query: 124 ---LEDMPFEK-WRLL-AENLDEDDRGKVISIMWNIWNYRNLIKQNPNKPDPNSIIRSVK 183
                D   +K W L+ + N+ +    KV    W          +N  K +   + R+V+
Sbjct: 407 CSCSSDYAIKKGWNLIWSCNVPQ----KVKIFGWRAATNSLPTMENKKKRNFGIVGRNVR 466

Query: 184 AFWEGRSYLSAVNKEPSRFKSSLSQSWSFPPRNFWKINTDASWSEDKGIGGIGWIARDSL 243
             W    +++              + WS P   + K+N D S+    G GGIG + R+S 
Sbjct: 467 QVWLATLFMA-------------YKLWSRPKPGWMKLNIDGSYGPQDGRGGIGAVLRESF 526

Query: 244 GSFICAGFKRMKRKWSILSLELKAIEESLLLAEIGNPLPRIIVESDYAFAIAILNRESEV 303
           G  I +    + R    L  EL A  + L LA     LP I VESD    I +LN + ++
Sbjct: 527 GRVIFSACGFIGRCNGALESELIACRDGLNLALQWTLLP-IAVESDCLEIIQLLNSKEKL 586

Query: 304 FSESRLVANDVEIAAELVGSVEYSFSR 322
            S    +  ++     + G+ E SF++
Sbjct: 587 LSAEGFIVREIRFL--MTGTKEVSFAK 593

[Close]

BLAST of Lcy05g014490 vs. ExPASy TrEMBL
Match: A0A6J5WPU6 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20372 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.8e-25
Identity = 107/437 (24.49%), Postives = 171/437 (39.13%), Query Frame = 0


Query: 3   WRSILWGRDLFKVGMRWRVGNGRHIRIAEDPWLGEAGPSKPVFVPEELKEAYVASLIDE- 62
           W+ IL GR L + G+RWR+G+G  +++  DPWL      + +    +L  + V  LID  
Sbjct: 491 WKGILQGRRLLESGLRWRIGDGTTVQVRNDPWLPTPYTFRTLSRHPDL-PSMVHELIDPL 550

Query: 63  GGNWRENEIRKLFIPSEAESILNIPLSRRDSNDEIFWGPDLKGNFTVKKGVGQALHM--- 122
              W+++ I + F+P EA  IL+IP+SR    D++ W   + G +TV+ G   ALH+   
Sbjct: 551 LKTWKKDVINRCFVPEEASHILSIPISRWGCPDKLIWHFSMHGRYTVRSGYELALHLQRN 610

Query: 123 ------------------------------------------------------------ 182
                                                                       
Sbjct: 611 GELGRKGAGEASSSSSQSSVWKSVWHVDAPPKLKAFIWRGCSNILAVRHNLRRRRVPYTG 670

Query: 183 -----GLEDMP--------------------------------FEKWRLLAENLDEDDRG 242
                G +D                                     W+ +   L+  +  
Sbjct: 671 ECGFCGFQDETQAHIFFECDFARAFWFASPLQLDVSKLAGEDFISTWQHMMTTLNSSEHA 730

Query: 243 K-----VISIMWNIWNYRNLIKQNPNKPDP-NSIIRSVKAFWEGRSYLSAVNKEPSRFKS 302
                  +  +W IW  RNL   +  + DP  +++  +K   E R+    +  +P +  S
Sbjct: 731 AEAIQWFVFGLWRIWKARNLAVFDGVQADPTEAVLLLLKQVSEFRTAKQDLQPQPLQPVS 790

Query: 303 SLSQ-SWSFPPRNFWKINTDASWSEDKGIGGIGWIARDSLGSFICAGFKRMKRKWSILSL 331
           S +  SW  PP    K+N DA+WS  +  GG+GW+ RDS G  +CAG +      S + +
Sbjct: 791 SPAPLSWCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMM 850

[Close]

BLAST of Lcy05g014490 vs. ExPASy TrEMBL
Match: A0A4Y1R838 (Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-24
Identity = 116/441 (26.30%), Postives = 168/441 (38.10%), Query Frame = 0


Query: 3   WRSILWGRDLFKVGMRWRVGNGRHIRIAEDPWLGEAGPSKPVFVPEELKEAYVASLID-E 62
           WR IL GR +   G+RWRVGNG  IR+ EDPWL +    K      EL    VA LID E
Sbjct: 132 WRGILQGRRILLAGLRWRVGNGERIRVTEDPWLPKPYTFKTSSRHPEL-PMIVAELIDSE 191

Query: 63  GGNWRENEIRKLFIPSEAESILNIPLSRRDSNDEIFWGPDLKGNFTVKKGVGQALHM--- 122
              WR + I +LF P E   I ++P+SR    D + W    +G +TV+ G   AL++   
Sbjct: 192 SKAWRCDLISQLFEPHEVRLITSMPISRWGCPDRLVWHFHKQGAYTVRSGYELALYLKRN 251

Query: 123 ---------------GLEDMPFEKWRL-------------------LAENL--------- 182
                           + D+    WRL                   +  NL         
Sbjct: 252 GELGVKGIGEGSGQHNMADVWKGIWRLRIPPKIRTFIWKACRNALAVRHNLKMRRVPVDN 311

Query: 183 --------DE--------------------------------------------DDRGK- 242
                   DE                                            D RG+ 
Sbjct: 312 GCAFCAHEDETQEHLFFFCDFARAMWFASPLQFDVRTLGEGDFLARWKTLREFYDTRGRV 371

Query: 243 ------VISIMWNIWNYRNLIKQNPNKPDPNSIIRSVKAFWEGRSYLSAVNKEPSRFKSS 302
                 V  ++W IW  RN +     +  P   +  +    +  + ++     P++   +
Sbjct: 372 EEALQLVAFVLWRIWKCRNTLVFTGVRIQPCDAVALLLTQVDEFNVVNVATTVPAQQPGA 431

Query: 303 LSQS-------WSFPPRNFWKINTDASWSEDKGIGGIGWIARDSLGSFICAGFKRMKRKW 330
            S S       WS PP    K+N D +W    G GG+GW+ RD +G FI AG     R  
Sbjct: 432 PSDSVGVASPGWSSPPPGLVKLNCDGAWVAQTGRGGVGWVLRDGIGCFISAGGCGDMRCT 491

[Close]

BLAST of Lcy05g014490 vs. NCBI nr
Match: ABB46931.2 (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group])

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-29
Identity = 104/373 (27.88%), Postives = 167/373 (44.77%), Query Frame = 0


Query: 3    WRSILWGRDLFKVGMRWRVGNGRHIRIAEDPWLGEAGPSKPVFVPEELKEAYVASLIDEG 62
            WR+I +G +L K G+ WR+GNG+ +R+  DPW+  +   +P+      +  +V+ LID+ 
Sbjct: 1443 WRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAKRNCRLRWVSDLIDQS 1502

Query: 63   GNWRENEIRKLFIPSEAESILNIPLSRRDSNDEIFWGPDLKGNFTVKKGVGQALHMGLED 122
            G+W  ++I + F+P +AE+ILNI LS R  +D I W PD  G F+V+     A+ +   D
Sbjct: 1503 GSWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAYHLAVALAHVD 1562

Query: 123  MPFEK------------WRL----------------------LAENLDEDDRGKVISIMW 182
                             W+                       L E    +D+  ++ ++W
Sbjct: 1563 EGSSSSGNGNSRAWNALWKCNAPQKLNPLSNIRNGDPKVILDLLEQSQPEDQVMLLMVLW 1622

Query: 183  NIWNYRNLIKQNPNKPDPNSII--RSVKAF---------------WEGRSYLSAVNKEPS 242
             IW+ RN I     KP P  ++  R ++++                +G+  +  V K+  
Sbjct: 1623 RIWHTRNEIVH--GKPAPGMLVSKRFIESYVLSLAEIKQHPQASPEKGKHVVDVVQKKLH 1682

Query: 243  RFKSS---LSQSWSFPPRNFWKINTDASWSEDKGIGGIGWIARDSLGSFICAGFKRMKRK 302
              K S   +   W  P     K+N D S+ E  G GGIG + R+  G  I A    +   
Sbjct: 1683 SIKRSREPVPDKWLKPLPGSMKLNVDGSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCC 1742

Query: 303  WSILSLELKAIEESLLLAEIGNPLPRIIVESDYAFAIAILNRESEVFSESRLVANDVEIA 322
             S L  EL A  + L LA     LP I++E+D    I +    +   SE   +    EI 
Sbjct: 1743 SSALETELLACRDGLALALQWTLLP-IVIETDCLAMIHLFRDATGAKSELAFLIR--EID 1802

[Close]

BLAST of Lcy05g014490 vs. NCBI nr
Match: AAM01179.2 (Putative retroelement [Oryza sativa Japonica Group])

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-29
Identity = 104/373 (27.88%), Postives = 167/373 (44.77%), Query Frame = 0


Query: 3    WRSILWGRDLFKVGMRWRVGNGRHIRIAEDPWLGEAGPSKPVFVPEELKEAYVASLIDEG 62
            WR+I +G +L K G+ WR+GNG+ +R+  DPW+  +   +P+      +  +V+ LID+ 
Sbjct: 1478 WRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRPISAKRNCRLRWVSDLIDQS 1537

Query: 63   GNWRENEIRKLFIPSEAESILNIPLSRRDSNDEIFWGPDLKGNFTVKKGVGQALHMGLED 122
            G+W  ++I + F+P +AE+ILNI LS R  +D I W PD  G F+V+     A+ +   D
Sbjct: 1538 GSWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAYHLAVALAHVD 1597

Query: 123  MPFEK------------WRL----------------------LAENLDEDDRGKVISIMW 182
                             W+                       L E    +D+  ++ ++W
Sbjct: 1598 EGSSSSGNGNSRAWNALWKCNAPQKLNPLSNIRNGDPKVILDLLEQSQPEDQVMLLMVLW 1657

Query: 183  NIWNYRNLIKQNPNKPDPNSII--RSVKAF---------------WEGRSYLSAVNKEPS 242
             IW+ RN I     KP P  ++  R ++++                +G+  +  V K+  
Sbjct: 1658 RIWHTRNEIVH--GKPAPGMLVSKRFIESYVLSLAEIKQHPQASPEKGKHVVDVVQKKLH 1717

Query: 243  RFKSS---LSQSWSFPPRNFWKINTDASWSEDKGIGGIGWIARDSLGSFICAGFKRMKRK 302
              K S   +   W  P     K+N D S+ E  G GGIG + R+  G  I A    +   
Sbjct: 1718 SIKRSREPVPDKWLKPLPGSMKLNVDGSFQESDGKGGIGAVLRNCTGEVIFAACGHVDCC 1777

Query: 303  WSILSLELKAIEESLLLAEIGNPLPRIIVESDYAFAIAILNRESEVFSESRLVANDVEIA 322
             S L  EL A  + L LA     LP I++E+D    I +    +   SE   +    EI 
Sbjct: 1778 SSALETELLACRDGLALALQWTLLP-IVIETDCLAMIHLFRDATGAKSELAFLIR--EID 1837

[Close]

BLAST of Lcy05g014490 vs. NCBI nr
Match: XP_015388020.1 (uncharacterized protein LOC107177951 [Citrus sinensis])

HSP 1 Score: 139.0 bits (349), Expect = 7.1e-29
Identity = 96/324 (29.63%), Postives = 151/324 (46.60%), Query Frame = 0


Query: 3   WRSILWGRDLFKVGMRWRVGNGRHIRIAEDPWLGEAGPSKPVFVPEELKEAYVASLIDEG 62
           WRSILWGR++   G+RWR+ +G+ +++ +  WL      KP+  P    +  V+ LIDE 
Sbjct: 684 WRSILWGREVIHKGLRWRIRDGKLVKVYQSGWLPRPETFKPISPPSLPLDTTVSVLIDED 743

Query: 63  GNWRENEIRKLFIPSEAESILNIPLSRRDSNDEIFWGPDLKGNFTVKKGVGQALHMGLED 122
             WR++ IRK F   +A  IL IPL R+ S D++ W  D KGN++VK G   AL M   +
Sbjct: 744 HCWRDDAIRKHFHQEDAAQILKIPLPRQPSLDQVLWHYDKKGNYSVKSGYQLALQMKFPN 803

Query: 123 MPFEKWRLLAENLDEDDRGKVISIMWNIWNYRNLIKQNPNKPDPNSIIRSVKAFWEGRSY 182
            P                GK  S   +IW  +  I +   K D    +   +A  +    
Sbjct: 804 RP-----------SSSKEGK--SSWSSIWYLQ--IPEKNKKEDSQLSVAGAEAIVQSYKR 863

Query: 183 LSAVNKEPSRFKSSLSQS-WSFPPRNFWKINTDASWSEDKGIGGIGWIARDSLGSFICAG 242
           +     +    ++  SQ  W+ PP  ++K+N DA+   D    G+G + R+S G  I A 
Sbjct: 864 IQMPQLQAISDQNLASQEHWNCPPAGWFKVNVDAAVKIDNQRVGLGIVIRNSEGKLITAA 923

Query: 243 FKRMKRKWSILSLELKAIEESLLLAEIGNPLPRIIVESDYAFAIAILNRESEVFSESRLV 302
            K  K    +   E +A    L +AEI   LP +IVE+D      +++      +E   +
Sbjct: 924 IKPSKWLDRMDYAEAEATRFGLEVAEIAGCLP-LIVETDSKEVSNLVSARKSTKAEIFWI 983

Query: 303 ANDVEIAAELVGSVEYSFSRREFN 326
            ++V+   E +  V+     R  N
Sbjct: 984 VSEVQETMERLKHVKLQHLPRTCN 991

[Close]

BLAST of Lcy05g014490 vs. NCBI nr
Match: XP_023880941.1 (uncharacterized protein LOC111993328 [Quercus suber])

HSP 1 Score: 136.0 bits (341), Expect = 6.0e-28
Identity = 96/312 (30.77%), Postives = 155/312 (49.68%), Query Frame = 0


Query: 3   WRSILWGRDLFKVGMRWRVGNGRHIRIAEDPWLGEAGPSKPVFVPEELKEAYVASLIDEG 62
           WRSI+  +++ ++G RW +GNG H+ I +D W+      K V     L    VA L+D  
Sbjct: 358 WRSIMAAKEIVEMGSRWLIGNGEHVDIWKDRWIPTPDSFKLVSPKVHLDSDKVACLLDAS 417

Query: 63  -GNWRENEIRKLFIPSEAESILNIPLSRRDSNDEIFWGPDLKGNFTVKKG--VGQALHMG 122
            G+W  +++R  F+P EAE+IL I +S R  ND + W     G F+VK    V Q    G
Sbjct: 418 TGSWDVDKVRHSFLPYEAEAILGISISPRRLNDSLIWARTKNGKFSVKSAYKVAQKWLKG 477

Query: 123 ----LEDMPFEKWRLLAENLDEDDRGKVISIMWNIWNYRNLIKQNPNKPDPNSIIRSVKA 182
               +++     W +     D +     ++  W++WN+RN +K          I + +  
Sbjct: 478 RSTKMQEFIEVVWEIKERKPDIEWESFAVT-AWSLWNHRNAVKHGDKCKTAARITKEI-- 537

Query: 183 FWEGRSYLSAVNKE---PSRFKSSLSQSWSFPPRNFW-KINTDASWSEDKGIGGIGWIAR 242
                 YL  + +E   PSR        WS PPRN W K+N D +  +D G  G+G + R
Sbjct: 538 ----ADYLKEIKQENLNPSRPPDVSVPHWS-PPRNGWYKVNADGAVFKDIGCCGVGIVIR 597

Query: 243 DSLGSFICAGFKRMKRKWSILSLELKAIEESLLLA-EIGNPLPRIIVESDYAFAI-AILN 302
           ++ G  + A  K +K     L  E +A++E +LLA ++G  L  I +ESD    I A+LN
Sbjct: 598 NNKGLLMGALSKLVKLPLKALESEARAVQEGVLLAWDLG--LREIEIESDSLVVISALLN 657

[Close]

BLAST of Lcy05g014490 vs. NCBI nr
Match: XP_023870384.1 (uncharacterized protein LOC111982984, partial [Quercus suber])

HSP 1 Score: 134.0 bits (336), Expect = 2.3e-27
Identity = 90/283 (31.80%), Postives = 141/283 (49.82%), Query Frame = 0


Query: 2   TWRSILWGRDLFKVGMRWRVGNGRHIRIAEDPWLGEAGPSKPVFVPEEL--KEAYVASLI 61
           TWR I   + + K G+RWRVGNG+ IRI  D WL + G S  V  P     ++  V+ LI
Sbjct: 315 TWRGIFSAQYIVKQGVRWRVGNGKDIRIWGDKWLPQ-GSSYEVISPRIFLHQDTRVSELI 374

Query: 62  DE-GGNWRENEIRKLFIPSEAESILNIPLSRRDSNDEIFWGPDLKGNFTVKKGVGQALHM 121
                 W E  IR++F+P +A++IL IPLS R   D I W     G FTV+     A+  
Sbjct: 375 HSVRKTWNEEVIRQIFLPVDADTILGIPLSIRLPGDRIIWVETNNGCFTVRSAYWVAMK- 434

Query: 122 GLEDMPFEKWRLLAENLDEDDRGKVISIMWNIWNYRNLIKQNPNKPDPNSIIRSVKAFWE 181
                  +   + ++  +E+    V++I W++W+  NL++    +  P +I++    + +
Sbjct: 435 --SHRSAQNATVSSDTFEEEKVALVVTIAWSLWSNHNLVRHRGLRKTPEAIVQWASHYLQ 494

Query: 182 GRSYLSAVNKEPSRFKSSLSQSWSFPPRNFWKINTDASWSEDKGIGGIGWIARDSLGSFI 241
              Y +A +  P     S+S +WS PP +  KIN D + ++ +    IG + RD  G   
Sbjct: 495 --DYAAATDSLPV-ILESVSVTWSPPPPSVVKINVDGALAKSRCSARIGVVIRDEAGHIA 554

Query: 242 CAGFKRMKRKWSILSLELKAIEESLLLA-EIGNPLPRIIVESD 281
            A  K+       L +E KA E  L LA ++G  L  +I+E D
Sbjct: 555 AAMGKQCHVPLGPLEVEAKAFETGLQLAWDLG--LQNVILEGD 588

[Close]

BLAST of Lcy05g014490 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-12
Identity = 51/183 (27.87%), Postives = 87/183 (47.54%), Query Frame = 0


Query: 146 IMWNIWNYRN-LIKQNPNKPDPNSIIRSVKAF--WEGRSYLSAVNKEPSRFKSSLSQSWS 205
           ++W +W  RN L+ +      P  + R+++ F  W  R  L      P + + +LS  W 
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGP-QVERNLSVQWK 139

Query: 206 FPPRNFWKINTDASWSEDKGIGGIGWIARDSLGSFICAGFKRMKRKWSILSLELKAIEES 265
            PP  + K NTDA+W  +    GIGWI R+  G  +  G + + R  ++L  EL+A+  +
Sbjct: 140 APPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWA 199

Query: 266 LLLAEIGNPLPRIIVESDYAFAIAILNRESEVFSESRLVANDVEIAAELVGSVEYSFSRR 325
           +L     N   RII ESD    + +LN + + +   +    D++        V++ F+ R
Sbjct: 200 VLTMSRFN-YKRIIFESDAQALVNLLNSD-DFWPTLQPALEDIQQLLHHFEEVKFEFTPR 259

[Close]

BLAST of Lcy05g014490 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-11
Identity = 48/183 (26.23%), Postives = 84/183 (45.90%), Query Frame = 0


Query: 146 IMWNIWNYRNLIKQNPNKPDPNSIIRSVK---AFWEGRSYLSAVNKEPSRFKSSLSQSWS 205
           ++W +W  RN +     + +   ++R  +     W  R+   +   +P   +SS  + W 
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR-WR 422

Query: 206 FPPRNFWKINTDASWSEDKGIGGIGWIARDSLGSFICAGFKRMKRKWSILSLELKAIEES 265
            PP  + K NTDA+W+ D    GIGW+ R+  G     G + + +  S+L  EL+A+  +
Sbjct: 423 PPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRWA 482

Query: 266 LLLAEIGNPLPRIIVESDYAFAIAILNRESEVFSESRLVANDVEIAAELVGSVEYSFSRR 325
           +L          +I ESD    I ILN + E++   +    D++        V++ F  R
Sbjct: 483 VLSLS-RFQYNYVIFESDSQVLIEILNND-EIWPSLKPTIQDLQRLLSQFTEVKFVFIPR 542

[Close]

BLAST of Lcy05g014490 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 8.2e-07
Identity = 55/219 (25.11%), Postives = 91/219 (41.55%), Query Frame = 0


Query: 124 PFEKWRLLAE-----NLDEDDRGKVISIMWNIWNYRNLIKQNPNKPDPNSIIRSVKAFWE 183
           P EK R++ +      +D   R     +MW IW   N +  N  +    + +    A  +
Sbjct: 20  PEEKLRIIFQMHNDSRVDRVTRFMPFWLMWRIWKSGNDLVFNHTRTKFQTTVE--MALND 79

Query: 184 GRSYLSAV----------NKEPSRFKSSLSQSWSFPPRNFWKINTDASWSEDKGIGGIGW 243
            + +L             N +PSR     +  WS P R+  K N DAS  E   + G+GW
Sbjct: 80  TKEWLDNTMTNEQQNGNRNADPSR-----NTKWSPPGRDKLKCNYDASHHERNTVSGLGW 139

Query: 244 IARDSLGSFICAGFKRMKRKWSILSLELKAIEESLLLAEIGNPLPRIIVESDYAFAIAIL 303
           I R+S G+ I  G  + + + +    E   +  + + A  G    ++I E D      ++
Sbjct: 140 ILRNSQGTVIECGMGKFQGRMTTEEAECSTLIWA-IQASYGFGHKKVIFEGDNQTITRMI 199

Query: 304 NRESEVFSESRL--VANDVEIAAELVGSVEYSFSRREFN 326
           N +S   S  RL    + ++       S+E+SF  RE N
Sbjct: 200 NTKS---SNPRLQHFLDTIQSWIPSFESIEFSFKHREQN 227

The following BLAST results are available for this feature:

BLAST of Lcy05g014490 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g014490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q8S5K1	5.3e-30	27.88	Putative retroelement OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0011A24....	[more]
Q33AJ4	5.3e-30	27.88	Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica ...	[more]
B8AHI8	1.8e-25	27.52	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_07152 PE=4...	[more]
A0A6J5WPU6	6.8e-25	24.49	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A4Y1R838	1.5e-24	26.30	Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255...	[more]

BLAST of Lcy05g014490 vs. NCBI nr


Match Name	E-value	Identity	Description
ABB46931.2	1.1e-29	27.88	retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]	[more]
AAM01179.2	1.1e-29	27.88	Putative retroelement [Oryza sativa Japonica Group]	[more]
XP_015388020.1	7.1e-29	29.63	uncharacterized protein LOC107177951 [Citrus sinensis]	[more]
XP_023880941.1	6.0e-28	30.77	uncharacterized protein LOC111993328 [Quercus suber]	[more]
XP_023870384.1	2.3e-27	31.80	uncharacterized protein LOC111982984, partial [Quercus suber]	[more]

BLAST of Lcy05g014490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34320.1	2.9e-12	27.87	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT4G29090.1	3.2e-11	26.23	Ribonuclease H-like superfamily protein	[more]
AT5G65005.1	8.2e-07	25.11	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 208..328 e-value: 3.2E-7 score: 32.4
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 212..325 e-value: 8.2E-12 score: 45.0
None	No IPR available	PANTHER	PTHR46736	FAMILY NOT NAMED	coord: 9..283
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 211..327 e-value: 3.25927E-16 score: 71.9616
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 207..290

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g014490.1	Lcy05g014490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity