Lcy05g014210 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g014210
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	thioredoxin-like protein CDSP32, chloroplastic
Location	Chr05: 17372131 .. 17372664 (-)
RNA-Seq Expression	Lcy05g014210
Synteny	Lcy05g014210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAACTCCACAACCTTCCCCTTCAACTCTCTCTTCGAAACAGAGTCCTCTGTTCCTTCCCCAATGGCTTCCTTCTCCCATTCTCTCCCCACGCCCCCTCCCTCTCTCTGCGCCAACAACCACCGCCTCCTCTCCACGCCCTCCCTCCTCCCCAACCTCATCAAGCTCGCCGCCGTCTCAGCAAATTTGCAGCTCGGGCATTGCCGCCGCCCCGAGCGTGAAGAAACCCACGAGCGACGAGCGAGTCCAGCAAGTCCACAGCATCGAGGAGTTCGACGAAGCCCTGACGAAGGTAAAGAGCAAGCTGGTGGTGGTGGAATACGCCGCCTCCCACAACACGCAGAGCAGCCGAATGTACCCGTTCATGGTGAGCCTGAGCAAAACCTGTAACGACGTGGAGTTCATTCTGGTAATGGGCGATGAATCGGAGCAGACCAAGGAGCTCTGTAACAGAGAGAAGATCGAAAATAATCAAAGGCTTCATCTACTATATTCTTTCTTTGGCAAGGAATCTCTCTATGTTTTTTTTTAG

mRNA sequence

ATGATAACTCCACAACCTTCCCCTTCAACTCTCTCTTCGAAACAGAGTCCTCTGTTCCTTCCCCAATGGCTTCCTTCTCCCATTCTCTCCCCACGCCCCCTCCCTCTCTCTGCGCCAACAACCACCGCCTCCTCTCCACGCCCTCCCTCCTCCCCAACCTCATCAAGCTCGCCGCCGTCTCAGCAAATTTGCAGCTCGGGCATTGCCGCCGCCCCGAGCGTGAAGAAACCCACGAGCGACGAGCGAGTCCAGCAAGTCCACAGCATCGAGGAGTTCGACGAAGCCCTGACGAAGGTAAAGAGCAAGCTGGTGGTGGTGGAATACGCCGCCTCCCACAACACGCAGAGCAGCCGAATGTACCCGTTCATGGTGAGCCTGAGCAAAACCTGTAACGACGTGGAGTTCATTCTGGTAATGGGCGATGAATCGGAGCAGACCAAGGAGCTCTGTAACAGAGAGAAGATCGAAAATAATCAAAGGCTTCATCTACTATATTCTTTCTTTGGCAAGGAATCTCTCTATGTTTTTTTTTAG

Coding sequence (CDS)

ATGATAACTCCACAACCTTCCCCTTCAACTCTCTCTTCGAAACAGAGTCCTCTGTTCCTTCCCCAATGGCTTCCTTCTCCCATTCTCTCCCCACGCCCCCTCCCTCTCTCTGCGCCAACAACCACCGCCTCCTCTCCACGCCCTCCCTCCTCCCCAACCTCATCAAGCTCGCCGCCGTCTCAGCAAATTTGCAGCTCGGGCATTGCCGCCGCCCCGAGCGTGAAGAAACCCACGAGCGACGAGCGAGTCCAGCAAGTCCACAGCATCGAGGAGTTCGACGAAGCCCTGACGAAGGTAAAGAGCAAGCTGGTGGTGGTGGAATACGCCGCCTCCCACAACACGCAGAGCAGCCGAATGTACCCGTTCATGGTGAGCCTGAGCAAAACCTGTAACGACGTGGAGTTCATTCTGGTAATGGGCGATGAATCGGAGCAGACCAAGGAGCTCTGTAACAGAGAGAAGATCGAAAATAATCAAAGGCTTCATCTACTATATTCTTTCTTTGGCAAGGAATCTCTCTATGTTTTTTTTTAG

Protein sequence

MITPQPSPSTLSSKQSPLFLPQWLPSPILSPRPLPLSAPTTTASSPRPPSSPTSSSSPPSQQICSSGIAAAPSVKKPTSDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRMYPFMVSLSKTCNDVEFILVMGDESEQTKELCNREKIENNQRLHLLYSFFGKESLYVFF

Homology

[Close]

BLAST of Lcy05g014210 vs. ExPASy Swiss-Prot
Match: Q84NN4 (Thioredoxin-like protein CDSP32, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CDSP32 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.9e-21
Identity = 56/96 (58.33%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 66  SGIAAAPSVKKPT------SDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRM 125
           SG   AP   K         DERV QVHS EE D AL   K +LVVVE+AASH+  SSR+
Sbjct: 51  SGTEQAPETTKKKGGGGGGGDERVVQVHSAEELDGALRAAKERLVVVEFAASHSVNSSRI 110

Query: 126 YPFMVSLSKTCNDVEFILVMGDESEQTKELCNREKI 156
           YP MV LS+TC DV+F+LVMGDES+ T+ELC RE I
Sbjct: 111 YPCMVELSRTCGDVDFLLVMGDESDATRELCRREGI 146

[Close]

BLAST of Lcy05g014210 vs. ExPASy Swiss-Prot
Match: Q9SGS4 (Thioredoxin-like protein CDSP32, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CDSP32 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-19
Identity = 67/142 (47.18%), Postives = 92/142 (64.79%), Query Frame = 0


Query: 23  WLPSPILSPRPLPLSAPTTTASSP--RPPSSPTSSSSPPSQQICS-----SGIAAAPSV- 82
           +L  PI +  P P SA  +T+S       ++P        +++ S     +G A+   V 
Sbjct: 7   FLAKPISTVVPRPSSAVASTSSFVFFNHKTNPLFRRKNLPKRLFSAVKIKAGAASPGKVG 66

Query: 83  KKPTSDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRMYPFMVSLSKTCNDVE 142
             P +DE+VQ++HS EEFD AL   KSKLVV E+A S + QS+++YPFMV LS+TCNDV 
Sbjct: 67  TPPANDEKVQKIHSGEEFDVALKNAKSKLVVAEFATSKSDQSNKIYPFMVELSRTCNDVV 126

Query: 143 FILVMGDESEQTKELCNREKIE 157
           F+LVMGDES++T+ELC REKIE
Sbjct: 127 FLLVMGDESDKTRELCRREKIE 148

[Close]

BLAST of Lcy05g014210 vs. ExPASy TrEMBL
Match: A0A6J1KLC1 (thioredoxin-like protein CDSP32, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496287 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.3e-34
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 70  AAPSVKKPTSDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRMYPFMVSLSKT 129
           AAPSVKKPT DERVQQVHS EEFDEAL K KSKLVVVE+AASH+ QSSRMYPFMV+LSKT
Sbjct: 59  AAPSVKKPTGDERVQQVHSAEEFDEALKKAKSKLVVVEFAASHSAQSSRMYPFMVTLSKT 118

Query: 130 CNDVEFILVMGDESEQTKELCNREKIE 157
           CNDVEFILVMGDESEQTKELCNREKIE
Sbjct: 119 CNDVEFILVMGDESEQTKELCNREKIE 145

[Close]

BLAST of Lcy05g014210 vs. ExPASy TrEMBL
Match: A0A6J1GJ10 (thioredoxin-like protein CDSP32, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454673 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.3e-34
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 70  AAPSVKKPTSDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRMYPFMVSLSKT 129
           AAPSVKKPT DERVQQVHS EEFDEAL K KSKLVVVE+AASH+ QSSRMYPFMV+LSKT
Sbjct: 59  AAPSVKKPTGDERVQQVHSAEEFDEALKKAKSKLVVVEFAASHSAQSSRMYPFMVTLSKT 118

Query: 130 CNDVEFILVMGDESEQTKELCNREKIE 157
           CNDVEFILVMGDESEQTKELCNREKIE
Sbjct: 119 CNDVEFILVMGDESEQTKELCNREKIE 145

[Close]

BLAST of Lcy05g014210 vs. ExPASy TrEMBL
Match: A0A1R3KZ16 (Thioredoxin OS=Corchorus capsularis OX=210143 GN=CCACVL1_00039 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 77/111 (69.37%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 46  PRPPSSPTSSSSPPSQQICSSGIAAAPSVKKPTSDERVQQVHSIEEFDEALTKVKSKLVV 105
           PRP S+   SS   S +  +    AAP  KK  SDERV+QVHSIEEFDEAL   K+KLVV
Sbjct: 39  PRPFSTKLESSR--SGRFITKA-TAAPKTKKAPSDERVKQVHSIEEFDEALKSAKNKLVV 98

Query: 106 VEYAASHNTQSSRMYPFMVSLSKTCNDVEFILVMGDESEQTKELCNREKIE 157
           VEYAASH+ QSS++YPFMV LS+TCNDVEF+LVMGDESEQTKELC REKIE
Sbjct: 99  VEYAASHSKQSSKIYPFMVELSRTCNDVEFLLVMGDESEQTKELCKREKIE 146

[Close]

BLAST of Lcy05g014210 vs. ExPASy TrEMBL
Match: A0A6A6LCI3 (Thioredoxin domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_006951 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.3e-27
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 70  AAPSVKKPTSDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRMYPFMVSLSKT 129
           AA   KKP  DERVQQ+HS E+FDEAL K KS+LVVVEYAASH+T SS++YPFMV LS+T
Sbjct: 125 AAQGTKKPARDERVQQIHSKEDFDEALKKAKSRLVVVEYAASHSTHSSKIYPFMVQLSRT 184

Query: 130 CNDVEFILVMGDESEQTKELCNREKIE 157
           CNDV+F+LVMGDESE+T+ELC REK+E
Sbjct: 185 CNDVDFLLVMGDESEKTRELCKREKVE 211

[Close]

BLAST of Lcy05g014210 vs. ExPASy TrEMBL
Match: A0A061FE06 (Chloroplastic drought-induced stress protein of 32 kD OS=Theobroma cacao OX=3641 GN=TCM_034302 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.7e-27
Identity = 66/87 (75.86%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 70  AAPSVKKPTSDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRMYPFMVSLSKT 129
           A P  KK +SDERVQQVHSIEEFDEAL   K+KLVVVE+AASH+  SS++YPFMV LS+T
Sbjct: 118 ATPGTKKASSDERVQQVHSIEEFDEALRMAKNKLVVVEFAASHSFHSSKIYPFMVDLSRT 177

Query: 130 CNDVEFILVMGDESEQTKELCNREKIE 157
           CNDVEFILVMGDESE+T+ELC REKI+
Sbjct: 178 CNDVEFILVMGDESEKTRELCKREKIQ 204

[Close]

BLAST of Lcy05g014210 vs. NCBI nr
Match: XP_023002451.1 (thioredoxin-like protein CDSP32, chloroplastic [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 6.8e-34
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 70  AAPSVKKPTSDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRMYPFMVSLSKT 129
           AAPSVKKPT DERVQQVHS EEFDEAL K KSKLVVVE+AASH+ QSSRMYPFMV+LSKT
Sbjct: 59  AAPSVKKPTGDERVQQVHSAEEFDEALKKAKSKLVVVEFAASHSAQSSRMYPFMVTLSKT 118

Query: 130 CNDVEFILVMGDESEQTKELCNREKIE 157
           CNDVEFILVMGDESEQTKELCNREKIE
Sbjct: 119 CNDVEFILVMGDESEQTKELCNREKIE 145

[Close]

BLAST of Lcy05g014210 vs. NCBI nr
Match: XP_022951937.1 (thioredoxin-like protein CDSP32, chloroplastic [Cucurbita moschata])

HSP 1 Score: 154.8 bits (390), Expect = 6.8e-34
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 70  AAPSVKKPTSDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRMYPFMVSLSKT 129
           AAPSVKKPT DERVQQVHS EEFDEAL K KSKLVVVE+AASH+ QSSRMYPFMV+LSKT
Sbjct: 59  AAPSVKKPTGDERVQQVHSAEEFDEALKKAKSKLVVVEFAASHSAQSSRMYPFMVTLSKT 118

Query: 130 CNDVEFILVMGDESEQTKELCNREKIE 157
           CNDVEFILVMGDESEQTKELCNREKIE
Sbjct: 119 CNDVEFILVMGDESEQTKELCNREKIE 145

[Close]

BLAST of Lcy05g014210 vs. NCBI nr
Match: KAG6585520.1 (Thioredoxin-like protein CDSP32, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020433.1 Thioredoxin-like protein CDSP32, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.8 bits (390), Expect = 6.8e-34
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 70  AAPSVKKPTSDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRMYPFMVSLSKT 129
           AAPSVKKPT DERVQQVHS EEFDEAL K KSKLVVVE+AASH+ QSSRMYPFMV+LSKT
Sbjct: 59  AAPSVKKPTGDERVQQVHSAEEFDEALKKAKSKLVVVEFAASHSAQSSRMYPFMVTLSKT 118

Query: 130 CNDVEFILVMGDESEQTKELCNREKIE 157
           CNDVEFILVMGDESEQTKELCNREKIE
Sbjct: 119 CNDVEFILVMGDESEQTKELCNREKIE 145

[Close]

BLAST of Lcy05g014210 vs. NCBI nr
Match: XP_023538539.1 (thioredoxin-like protein CDSP32, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.8 bits (390), Expect = 6.8e-34
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 70  AAPSVKKPTSDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRMYPFMVSLSKT 129
           AAPSVKKPT DERVQQVHS EEFDEAL K KSKLVVVE+AASH+ QSSRMYPFMV+LSKT
Sbjct: 59  AAPSVKKPTGDERVQQVHSAEEFDEALKKAKSKLVVVEFAASHSAQSSRMYPFMVTLSKT 118

Query: 130 CNDVEFILVMGDESEQTKELCNREKIE 157
           CNDVEFILVMGDESEQTKELCNREKIE
Sbjct: 119 CNDVEFILVMGDESEQTKELCNREKIE 145

[Close]

BLAST of Lcy05g014210 vs. NCBI nr
Match: XP_038886711.1 (thioredoxin-like protein CDSP32, chloroplastic [Benincasa hispida])

HSP 1 Score: 141.7 bits (356), Expect = 5.9e-30
Identity = 91/156 (58.33%), Postives = 108/156 (69.23%), Query Frame = 0


Query: 1   MITPQPSPSTLSSKQSPLFLPQWLPSPILSPRPLPLSAPTTTASSPRPPSSPTSSSSPPS 60
           M +  P+PS  +    P  +P      ++ P     +AP+ +A      SSP   ++P  
Sbjct: 1   MASFSPAPSLYTQNTRPSLIPN-----LIKP-----AAPSISAYY----SSPRLITTPLR 60

Query: 61  QQICSSGIAAAPSVKKPTSDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRMY 120
           ++       AAPSVKK +SDERV QVHS EEFDEAL K KSKLVVVE+AASH+ QSSRMY
Sbjct: 61  RRALRIQATAAPSVKKQSSDERVLQVHSKEEFDEALKKAKSKLVVVEFAASHSAQSSRMY 120

Query: 121 PFMVSLSKTCNDVEFILVMGDESEQTKELCNREKIE 157
           PFMVSLSKTCNDVEFILVMGDESE+TKELCNREKIE
Sbjct: 121 PFMVSLSKTCNDVEFILVMGDESEKTKELCNREKIE 142

[Close]

BLAST of Lcy05g014210 vs. TAIR 10
Match: AT1G76080.1 (chloroplastic drought-induced stress protein of 32 kD )

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-20
Identity = 67/142 (47.18%), Postives = 92/142 (64.79%), Query Frame = 0


Query: 23  WLPSPILSPRPLPLSAPTTTASSP--RPPSSPTSSSSPPSQQICS-----SGIAAAPSV- 82
           +L  PI +  P P SA  +T+S       ++P        +++ S     +G A+   V 
Sbjct: 7   FLAKPISTVVPRPSSAVASTSSFVFFNHKTNPLFRRKNLPKRLFSAVKIKAGAASPGKVG 66

Query: 83  KKPTSDERVQQVHSIEEFDEALTKVKSKLVVVEYAASHNTQSSRMYPFMVSLSKTCNDVE 142
             P +DE+VQ++HS EEFD AL   KSKLVV E+A S + QS+++YPFMV LS+TCNDV 
Sbjct: 67  TPPANDEKVQKIHSGEEFDVALKNAKSKLVVAEFATSKSDQSNKIYPFMVELSRTCNDVV 126

Query: 143 FILVMGDESEQTKELCNREKIE 157
           F+LVMGDES++T+ELC REKIE
Sbjct: 127 FLLVMGDESDKTRELCRREKIE 148

The following BLAST results are available for this feature:

BLAST of Lcy05g014210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84NN4	8.9e-21	58.33	Thioredoxin-like protein CDSP32, chloroplastic OS=Oryza sativa subsp. japonica O...	[more]
Q9SGS4	3.7e-19	47.18	Thioredoxin-like protein CDSP32, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Lcy05g014210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLC1	3.3e-34	90.80	thioredoxin-like protein CDSP32, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GJ10	3.3e-34	90.80	thioredoxin-like protein CDSP32, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A1R3KZ16	1.3e-27	69.37	Thioredoxin OS=Corchorus capsularis OX=210143 GN=CCACVL1_00039 PE=4 SV=1	[more]
A0A6A6LCI3	1.3e-27	73.56	Thioredoxin domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_006...	[more]
A0A061FE06	1.7e-27	75.86	Chloroplastic drought-induced stress protein of 32 kD OS=Theobroma cacao OX=3641...	[more]

BLAST of Lcy05g014210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002451.1	6.8e-34	90.80	thioredoxin-like protein CDSP32, chloroplastic [Cucurbita maxima]	[more]
XP_022951937.1	6.8e-34	90.80	thioredoxin-like protein CDSP32, chloroplastic [Cucurbita moschata]	[more]
KAG6585520.1	6.8e-34	90.80	Thioredoxin-like protein CDSP32, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_023538539.1	6.8e-34	90.80	thioredoxin-like protein CDSP32, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_038886711.1	5.9e-30	58.33	thioredoxin-like protein CDSP32, chloroplastic [Benincasa hispida]	[more]

BLAST of Lcy05g014210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76080.1	2.7e-20	47.18	chloroplastic drought-induced stress protein of 32 kD	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 71..161 e-value: 9.0E-9 score: 37.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
IPR044192	Thioredoxin-like protein CDSP32	PANTHER	PTHR47578	THIOREDOXIN-LIKE PROTEIN CDSP32, CHLOROPLASTIC	coord: 51..157
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 84..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g014210.1	Lcy05g014210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor