Lcy05g014110 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g014110
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein AF-9 isoform X1
LocationChr05: 17235120 .. 17235488 (-)
RNA-Seq ExpressionLcy05g014110
SyntenyLcy05g014110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGCGTGGATTTCCATCGTCACTCGCAATCAGAAGAAGAAGATTGCAGAAATGAAGATGGGATCCCGAGCTTGGAAAAATCTGCGGCGAGGAAAGAGAAATCTGAGTTCAGTTTGGGTATGCTTTCGTCGTCTTCCTCTTCTTCTTCTTCGTCGAGCTCTGATGAGTCTACTCCAAATTCAGTTTCAGATTCGTCCCCAAATTTCATGAAGACCACTACCAGCTCCGAGGCGAGAGTCCAGGTCTGCCTCAGATTTCGAATTCTTCTTTCTCAAGTAATTGCGATTGCCAGTGGTAGATATTGTAGTAAGATTTTAAATCTACTGGTTGGAACAGAAATCACCTGCAAGCCGCTCTGGTTCTAA

mRNA sequence

ATGATCGGCGTGGATTTCCATCGTCACTCGCAATCAGAAGAAGAAGATTGCAGAAATGAAGATGGGATCCCGAGCTTGGAAAAATCTGCGGCGAGGAAAGAGAAATCTGAGTTCAGTTTGGGTATGCTTTCGTCGTCTTCCTCTTCTTCTTCTTCGTCGAGCTCTGATGAGTCTACTCCAAATTCAGTTTCAGATTCGTCCCCAAATTTCATGAAGACCACTACCAGCTCCGAGGCGAGAGTCCAGGTCTGCCTCAGATTTCGAATTCTTCTTTCTCAAGTAATTGCGATTGCCAGTGGTAGATATTGTAGTAAGATTTTAAATCTACTGGTTGGAACAGAAATCACCTGCAAGCCGCTCTGGTTCTAA

Coding sequence (CDS)

ATGATCGGCGTGGATTTCCATCGTCACTCGCAATCAGAAGAAGAAGATTGCAGAAATGAAGATGGGATCCCGAGCTTGGAAAAATCTGCGGCGAGGAAAGAGAAATCTGAGTTCAGTTTGGGTATGCTTTCGTCGTCTTCCTCTTCTTCTTCTTCGTCGAGCTCTGATGAGTCTACTCCAAATTCAGTTTCAGATTCGTCCCCAAATTTCATGAAGACCACTACCAGCTCCGAGGCGAGAGTCCAGGTCTGCCTCAGATTTCGAATTCTTCTTTCTCAAGTAATTGCGATTGCCAGTGGTAGATATTGTAGTAAGATTTTAAATCTACTGGTTGGAACAGAAATCACCTGCAAGCCGCTCTGGTTCTAA

Protein sequence

MIGVDFHRHSQSEEEDCRNEDGIPSLEKSAARKEKSEFSLGMLSSSSSSSSSSSSDESTPNSVSDSSPNFMKTTTSSEARVQVCLRFRILLSQVIAIASGRYCSKILNLLVGTEITCKPLWF
Homology
BLAST of Lcy05g014110 vs. ExPASy TrEMBL
Match: A0A5A7UDE7 (Protein AF-9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007480 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.5e-17
Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 0

Query: 1  MIGVDFHRHSQSEEEDCRNE-DGIPSLEKSAARKEKSEFSLGML-----SSSSSSSSSSS 60
          MI +D H HSQS EEDCRNE DG+ SL+KSAAR++KSEFSLG++     SSSSSSSSSSS
Sbjct: 1  MIDLDSHHHSQS-EEDCRNEDDGVSSLDKSAAREQKSEFSLGIISSSSSSSSSSSSSSSS 60

Query: 61 SDESTPNSVSDSSPNFMKTTTSSEAR 81
          SDE+TP+S+ DS+PNFMKTTTSSEAR
Sbjct: 61 SDETTPSSILDSAPNFMKTTTSSEAR 85

BLAST of Lcy05g014110 vs. ExPASy TrEMBL
Match: A0A1S3B8I4 (protein AF-9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486952 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.5e-17
Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 0

Query: 1  MIGVDFHRHSQSEEEDCRNE-DGIPSLEKSAARKEKSEFSLGML-----SSSSSSSSSSS 60
          MI +D H HSQS EEDCRNE DG+ SL+KSAAR++KSEFSLG++     SSSSSSSSSSS
Sbjct: 1  MIDLDSHHHSQS-EEDCRNEDDGVSSLDKSAAREQKSEFSLGIISSSSSSSSSSSSSSSS 60

Query: 61 SDESTPNSVSDSSPNFMKTTTSSEAR 81
          SDE+TP+S+ DS+PNFMKTTTSSEAR
Sbjct: 61 SDETTPSSILDSAPNFMKTTTSSEAR 85

BLAST of Lcy05g014110 vs. ExPASy TrEMBL
Match: A0A0A0LF56 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G823080 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.6e-16
Identity = 62/82 (75.61%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 1  MIGVDFHRHSQSEEEDCRN-EDGIPSLEKSAARKEKSEFSLGML-SSSSSSSSSSSSDES 60
          MI +D H HSQS EEDCRN +DG  SL+KS AR++KSEFSLG++ SSSSSSSSSSSSDES
Sbjct: 1  MIDLDSHHHSQS-EEDCRNADDGASSLDKSPARQQKSEFSLGIISSSSSSSSSSSSSDES 60

Query: 61 TPNSVSDSSPNFMKTTTSSEAR 81
          TP+S+ DS+PNFMKTTTSSEAR
Sbjct: 61 TPSSILDSAPNFMKTTTSSEAR 81

BLAST of Lcy05g014110 vs. ExPASy TrEMBL
Match: A0A6J1J6L2 (calmodulin binding protein PICBP-like OS=Cucurbita maxima OX=3661 GN=LOC111482229 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.0e-14
Identity = 61/85 (71.76%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 1  MIGVDFHR-----HSQSEEEDCRNEDGIPSLEKSAARKEKSEFSLGMLSSSSSSSSSSSS 60
          MI VD HR     HSQS E+D +NEDGIP+LEKS AR+  SEFS G++SSSSSSSSSSS 
Sbjct: 1  MIDVDSHRRHHHHHSQS-EDDRKNEDGIPNLEKSTAREGTSEFSFGIVSSSSSSSSSSSY 60

Query: 61 DESTPNSVSDSSPNFMKTTTSSEAR 81
           +ST NSVSDSSPNFMKTT SSEAR
Sbjct: 61 GDSTSNSVSDSSPNFMKTTRSSEAR 84

BLAST of Lcy05g014110 vs. ExPASy TrEMBL
Match: A0A6J1F1N6 (calmodulin binding protein PICBP-like OS=Cucurbita moschata OX=3662 GN=LOC111441572 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.7e-13
Identity = 62/86 (72.09%), Postives = 67/86 (77.91%), Query Frame = 0

Query: 1  MIGVD-----FHRHSQSEEEDCRNEDGIPSLEKSAARKEKSEFSLGMLSSSSSSSSSSSS 60
          MI VD      H HSQS E+D RNEDGIPSLEKS A +  SEFS G++SSSSSSSSSSSS
Sbjct: 1  MIDVDSHHRRHHHHSQS-EDDRRNEDGIPSLEKSTAGEGTSEFSFGIVSSSSSSSSSSSS 60

Query: 61 -DESTPNSVSDSSPNFMKTTTSSEAR 81
            +ST NSVSDSSPNFMKTT SSEAR
Sbjct: 61 YGDSTTNSVSDSSPNFMKTTRSSEAR 85

BLAST of Lcy05g014110 vs. NCBI nr
Match: XP_038903813.1 (calmodulin binding protein PICBP-like [Benincasa hispida])

HSP 1 Score: 107.5 bits (267), Expect = 8.5e-20
Identity = 69/85 (81.18%), Postives = 74/85 (87.06%), Query Frame = 0

Query: 1  MIGVDFHRHSQSEEEDCRNEDGIPSLEKSAARKEKSEFSLGML-----SSSSSSSSSSSS 60
          MIGVD H HSQS +EDCRNEDGI SL KSAARKEKSEFSLG++     SSSSSSSSSSSS
Sbjct: 1  MIGVDSHHHSQS-DEDCRNEDGISSLVKSAARKEKSEFSLGVISSSSSSSSSSSSSSSSS 60

Query: 61 DESTPNSVSDSSPNFMKTTTSSEAR 81
          DESTP+S+ DSSPNFMKTTTSSEAR
Sbjct: 61 DESTPSSILDSSPNFMKTTTSSEAR 84

BLAST of Lcy05g014110 vs. NCBI nr
Match: XP_008443341.2 (PREDICTED: protein AF-9 isoform X1 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 0

Query: 1  MIGVDFHRHSQSEEEDCRNE-DGIPSLEKSAARKEKSEFSLGML-----SSSSSSSSSSS 60
          MI +D H HSQS EEDCRNE DG+ SL+KSAAR++KSEFSLG++     SSSSSSSSSSS
Sbjct: 1  MIDLDSHHHSQS-EEDCRNEDDGVSSLDKSAAREQKSEFSLGIISSSSSSSSSSSSSSSS 60

Query: 61 SDESTPNSVSDSSPNFMKTTTSSEAR 81
          SDE+TP+S+ DS+PNFMKTTTSSEAR
Sbjct: 61 SDETTPSSILDSAPNFMKTTTSSEAR 85

BLAST of Lcy05g014110 vs. NCBI nr
Match: KAA0053812.1 (protein AF-9 isoform X1 [Cucumis melo var. makuwa] >TYK25589.1 protein AF-9 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 0

Query: 1  MIGVDFHRHSQSEEEDCRNE-DGIPSLEKSAARKEKSEFSLGML-----SSSSSSSSSSS 60
          MI +D H HSQS EEDCRNE DG+ SL+KSAAR++KSEFSLG++     SSSSSSSSSSS
Sbjct: 1  MIDLDSHHHSQS-EEDCRNEDDGVSSLDKSAAREQKSEFSLGIISSSSSSSSSSSSSSSS 60

Query: 61 SDESTPNSVSDSSPNFMKTTTSSEAR 81
          SDE+TP+S+ DS+PNFMKTTTSSEAR
Sbjct: 61 SDETTPSSILDSAPNFMKTTTSSEAR 85

BLAST of Lcy05g014110 vs. NCBI nr
Match: XP_011652212.1 (calmodulin binding protein PICBP [Cucumis sativus] >XP_031738000.1 calmodulin binding protein PICBP [Cucumis sativus] >KGN59509.1 hypothetical protein Csa_001892 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 7.5e-16
Identity = 62/82 (75.61%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 1  MIGVDFHRHSQSEEEDCRN-EDGIPSLEKSAARKEKSEFSLGML-SSSSSSSSSSSSDES 60
          MI +D H HSQS EEDCRN +DG  SL+KS AR++KSEFSLG++ SSSSSSSSSSSSDES
Sbjct: 1  MIDLDSHHHSQS-EEDCRNADDGASSLDKSPARQQKSEFSLGIISSSSSSSSSSSSSDES 60

Query: 61 TPNSVSDSSPNFMKTTTSSEAR 81
          TP+S+ DS+PNFMKTTTSSEAR
Sbjct: 61 TPSSILDSAPNFMKTTTSSEAR 81

BLAST of Lcy05g014110 vs. NCBI nr
Match: XP_022983685.1 (calmodulin binding protein PICBP-like [Cucurbita maxima])

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-14
Identity = 61/85 (71.76%), Postives = 68/85 (80.00%), Query Frame = 0

Query: 1  MIGVDFHR-----HSQSEEEDCRNEDGIPSLEKSAARKEKSEFSLGMLSSSSSSSSSSSS 60
          MI VD HR     HSQS E+D +NEDGIP+LEKS AR+  SEFS G++SSSSSSSSSSS 
Sbjct: 1  MIDVDSHRRHHHHHSQS-EDDRKNEDGIPNLEKSTAREGTSEFSFGIVSSSSSSSSSSSY 60

Query: 61 DESTPNSVSDSSPNFMKTTTSSEAR 81
           +ST NSVSDSSPNFMKTT SSEAR
Sbjct: 61 GDSTSNSVSDSSPNFMKTTRSSEAR 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UDE79.5e-1773.26Protein AF-9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B8I49.5e-1773.26protein AF-9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486952 PE=4 SV=1[more]
A0A0A0LF563.6e-1675.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G823080 PE=4 SV=1[more]
A0A6J1J6L22.0e-1471.76calmodulin binding protein PICBP-like OS=Cucurbita maxima OX=3661 GN=LOC11148222... [more]
A0A6J1F1N63.7e-1372.09calmodulin binding protein PICBP-like OS=Cucurbita moschata OX=3662 GN=LOC111441... [more]
Match NameE-valueIdentityDescription
XP_038903813.18.5e-2081.18calmodulin binding protein PICBP-like [Benincasa hispida][more]
XP_008443341.22.0e-1673.26PREDICTED: protein AF-9 isoform X1 [Cucumis melo][more]
KAA0053812.12.0e-1673.26protein AF-9 isoform X1 [Cucumis melo var. makuwa] >TYK25589.1 protein AF-9 isof... [more]
XP_011652212.17.5e-1675.61calmodulin binding protein PICBP [Cucumis sativus] >XP_031738000.1 calmodulin bi... [more]
XP_022983685.14.1e-1471.76calmodulin binding protein PICBP-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g014110.1Lcy05g014110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005516 calmodulin binding