Lcy05g014080 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g014080
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	rRNA intron-encoded homing endonuclease, putative
Location	Chr05: 17171222 .. 17171757 (-)
RNA-Seq Expression	Lcy05g014080
Synteny	Lcy05g014080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGCATCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCAGGTCGTGCCTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAATATCATAGGATTTCGATCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAATCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCATTTGACTCAACATAG

mRNA sequence

ATGGTGAGCATCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCAGGATTTCGATCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAATCGGGGGCATTCGTATTTCATAGTCAGAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCATTTGACTCAACATAG

Coding sequence (CDS)

ATGGTGAGCATCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCAGGATTTCGATCCTATTCTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAATCGGGGGCATTCGTATTTCATAGTCAGAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTCATTTGACTCAACATAG

Protein sequence

MVSIGRLVPSAGDALLALTGQDFDPILLAFGIGVMINRDNRGHSYFIVRERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAASFDST

Homology

[Close]

BLAST of Lcy05g014080 vs. ExPASy TrEMBL
Match: A0A4U5Q829 (Retrotrans_gag domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000127890 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 7.1e-52
Identity = 111/123 (90.24%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 1   MVSIGRLVPSAGDALLALTGQ----DFDPILLAFGIGVMINRDNRGHSYFIVRERKLGAR 60
           MV  GRLVPS GDALLALTG+    DFDPI+LAFGIGVMINRD+RGHSYFIVRERKLGAR
Sbjct: 524 MVCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDSRGHSYFIVRERKLGAR 583

Query: 61  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 120
           RRSDTVLVSTINDADQGLADVA RTPPAPYEKSK LGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 584 RRSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVE 643

[Close]

BLAST of Lcy05g014080 vs. ExPASy TrEMBL
Match: A0A4U5PVW4 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000127940 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.1e-51
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 2   VSIGRLVPSAGDALLALTGQ----DFDPILLAFGIGVMINRDNRGHSYFIVRERKLGARR 61
           V  GRLVPS GDALLALTG+    DFDPI+LAFGIGVMINRD+RGHSYFIVRERKLGARR
Sbjct: 522 VCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDSRGHSYFIVRERKLGARR 581

Query: 62  RSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEP 120
           RSDTVLVSTINDADQGLADVA RTPPAPYEKSK LGSGGSMVARLKLKGIDGRAPPGVEP
Sbjct: 582 RSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVEP 641

[Close]

BLAST of Lcy05g014080 vs. ExPASy TrEMBL
Match: A0A4U5R5A1 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000012970 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.1e-51
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 2   VSIGRLVPSAGDALLALTGQ----DFDPILLAFGIGVMINRDNRGHSYFIVRERKLGARR 61
           V  GRLVPS GDALLALTG+    DFDPI+LAFGIGVMINRD+RGHSYFIVRERKLGARR
Sbjct: 181 VCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDSRGHSYFIVRERKLGARR 240

Query: 62  RSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEP 120
           RSDTVLVSTINDADQGLADVA RTPPAPYEKSK LGSGGSMVARLKLKGIDGRAPPGVEP
Sbjct: 241 RSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVEP 300

[Close]

BLAST of Lcy05g014080 vs. ExPASy TrEMBL
Match: A0A4U5QPX7 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000063000 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.1e-51
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 2   VSIGRLVPSAGDALLALTGQ----DFDPILLAFGIGVMINRDNRGHSYFIVRERKLGARR 61
           V  GRLVPS GDALLALTG+    DFDPI+LAFGIGVMINRD+RGHSYFIVRERKLGARR
Sbjct: 51  VCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDSRGHSYFIVRERKLGARR 110

Query: 62  RSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEP 120
           RSDTVLVSTINDADQGLADVA RTPPAPYEKSK LGSGGSMVARLKLKGIDGRAPPGVEP
Sbjct: 111 RSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVEP 170

[Close]

BLAST of Lcy05g014080 vs. ExPASy TrEMBL
Match: A0A4U5PVM9 (Retrotrans_gag domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000171920 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.1e-51
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 2    VSIGRLVPSAGDALLALTGQ----DFDPILLAFGIGVMINRDNRGHSYFIVRERKLGARR 61
            V  GRLVPS GDALLALTG+    DFDPI+LAFGIGVMINRD+RGHSYFIVRERKLGARR
Sbjct: 1106 VCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDSRGHSYFIVRERKLGARR 1165

Query: 62   RSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEP 120
            RSDTVLVSTINDADQGLADVA RTPPAPYEKSK LGSGGSMVARLKLKGIDGRAPPGVEP
Sbjct: 1166 RSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVEP 1225

[Close]

BLAST of Lcy05g014080 vs. NCBI nr
Match: TKS05961.1 (hypothetical protein D5086_0000127890 [Populus alba])

HSP 1 Score: 213.0 bits (541), Expect = 1.5e-51
Identity = 111/123 (90.24%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 1   MVSIGRLVPSAGDALLALTGQ----DFDPILLAFGIGVMINRDNRGHSYFIVRERKLGAR 60
           MV  GRLVPS GDALLALTG+    DFDPI+LAFGIGVMINRD+RGHSYFIVRERKLGAR
Sbjct: 524 MVCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDSRGHSYFIVRERKLGAR 583

Query: 61  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 120
           RRSDTVLVSTINDADQGLADVA RTPPAPYEKSK LGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 584 RRSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVE 643

[Close]

BLAST of Lcy05g014080 vs. NCBI nr
Match: TKS17488.1 (hypothetical protein D5086_0000013120 [Populus alba])

HSP 1 Score: 211.5 bits (537), Expect = 4.3e-51
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 2   VSIGRLVPSAGDALLALTGQ----DFDPILLAFGIGVMINRDNRGHSYFIVRERKLGARR 61
           V  GRLVPS GDALLALTG+    DFDPI+LAFGIGVMINRD+RGHSYFIVRERKLGARR
Sbjct: 444 VCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDSRGHSYFIVRERKLGARR 503

Query: 62  RSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEP 120
           RSDTVLVSTINDADQGLADVA RTPPAPYEKSK LGSGGSMVARLKLKGIDGRAPPGVEP
Sbjct: 504 RSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVEP 563

[Close]

BLAST of Lcy05g014080 vs. NCBI nr
Match: TKS01553.1 (hypothetical protein D5086_0000171920 [Populus alba])

HSP 1 Score: 211.5 bits (537), Expect = 4.3e-51
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 2    VSIGRLVPSAGDALLALTGQ----DFDPILLAFGIGVMINRDNRGHSYFIVRERKLGARR 61
            V  GRLVPS GDALLALTG+    DFDPI+LAFGIGVMINRD+RGHSYFIVRERKLGARR
Sbjct: 1106 VCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDSRGHSYFIVRERKLGARR 1165

Query: 62   RSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEP 120
            RSDTVLVSTINDADQGLADVA RTPPAPYEKSK LGSGGSMVARLKLKGIDGRAPPGVEP
Sbjct: 1166 RSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVEP 1225

[Close]

BLAST of Lcy05g014080 vs. NCBI nr
Match: TKS01561.1 (hypothetical protein D5086_0000172000 [Populus alba])

HSP 1 Score: 211.5 bits (537), Expect = 4.3e-51
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 2   VSIGRLVPSAGDALLALTGQ----DFDPILLAFGIGVMINRDNRGHSYFIVRERKLGARR 61
           V  GRLVPS GDALLALTG+    DFDPI+LAFGIGVMINRD+RGHSYFIVRERKLGARR
Sbjct: 607 VCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDSRGHSYFIVRERKLGARR 666

Query: 62  RSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEP 120
           RSDTVLVSTINDADQGLADVA RTPPAPYEKSK LGSGGSMVARLKLKGIDGRAPPGVEP
Sbjct: 667 RSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVEP 726

[Close]

BLAST of Lcy05g014080 vs. NCBI nr
Match: TKS01550.1 (hypothetical protein D5086_0000171890 [Populus alba] >TKS05966.1 hypothetical protein D5086_0000127940 [Populus alba])

HSP 1 Score: 211.5 bits (537), Expect = 4.3e-51
Identity = 110/122 (90.16%), Postives = 113/122 (92.62%), Query Frame = 0


Query: 2   VSIGRLVPSAGDALLALTGQ----DFDPILLAFGIGVMINRDNRGHSYFIVRERKLGARR 61
           V  GRLVPS GDALLALTG+    DFDPI+LAFGIGVMINRD+RGHSYFIVRERKLGARR
Sbjct: 522 VCTGRLVPSTGDALLALTGRVVPPDFDPIVLAFGIGVMINRDSRGHSYFIVRERKLGARR 581

Query: 62  RSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEP 120
           RSDTVLVSTINDADQGLADVA RTPPAPYEKSK LGSGGSMVARLKLKGIDGRAPPGVEP
Sbjct: 582 RSDTVLVSTINDADQGLADVASRTPPAPYEKSKFLGSGGSMVARLKLKGIDGRAPPGVEP 641

The following BLAST results are available for this feature:

BLAST of Lcy05g014080 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g014080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4U5Q829	7.1e-52	90.24	Retrotrans_gag domain-containing protein OS=Populus alba OX=43335 GN=D5086_00001...	[more]
A0A4U5PVW4	2.1e-51	90.16	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000127940 PE=4 SV=1	[more]
A0A4U5R5A1	2.1e-51	90.16	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000012970 PE=4 SV=1	[more]
A0A4U5QPX7	2.1e-51	90.16	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000063000 PE=4 SV=1	[more]
A0A4U5PVM9	2.1e-51	90.16	Retrotrans_gag domain-containing protein OS=Populus alba OX=43335 GN=D5086_00001...	[more]

BLAST of Lcy05g014080 vs. NCBI nr


Match Name	E-value	Identity	Description
TKS05961.1	1.5e-51	90.24	hypothetical protein D5086_0000127890 [Populus alba]	[more]
TKS17488.1	4.3e-51	90.16	hypothetical protein D5086_0000013120 [Populus alba]	[more]
TKS01553.1	4.3e-51	90.16	hypothetical protein D5086_0000171920 [Populus alba]	[more]
TKS01561.1	4.3e-51	90.16	hypothetical protein D5086_0000172000 [Populus alba]	[more]
TKS01550.1	4.3e-51	90.16	hypothetical protein D5086_0000171890 [Populus alba] >TKS05966.1 hypothetical pr...	[more]

BLAST of Lcy05g014080 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34410	INTRON-ENCODED HOMING ENDONUCLEASE, PUTATIVE-RELATED	coord: 4..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g014080.1	Lcy05g014080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity