Lcy05g013680 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g013680
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description50S ribosomal protein L27-like
LocationChr05: 16554598 .. 16557733 (+)
RNA-Seq ExpressionLcy05g013680
SyntenyLcy05g013680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGTTCAACCACCGCCGCTGTTCAACCACCGTTGCTCGCACTTTCATTCGCGCATCGCAGCAGCCAAGCCAACAAGGTGGATTTTCGTTTTACTTTCTCCTTTCTCTCTCTCTCTATTTTTTTTTTGTTTGAAACTCTGGTTTTACTTTGTCATTTTTTTTCCTTTTCAGTTTTCACGCCTCTTAAATCGAGATTTAAATTGAAACATTACTTCTGCTCTGCTCGTCTGCTTGATTACTCAAAGTTTTACATCCTGTGACTCTTGAGATGCCATCTTTAAATGATGGTATAATTAATTAGCAGAGACTTTGTATCTGTTAACGCTTCACTCTTCTCCCCTTCCTCTCACCTTCTTCTGGCCCAGGATGTATGATTGGTTCCTACATCATTATCATTACTGTGTTTTATGTTGTGTTATTTTATGATATTGGGTGTAATGTTATTGGGTTTTTGGATGCTTACTTTGATAATCGAAGTGAATAATTTTTGCGATTGCAGCTGCCTCTATAATGTTTTGATTTATTTTGAAATTAACAAGTTTTTTTTTTTTTTAATACTTGAAATTAACAAGCCTAGGCTTTGAAAATTGCATTCAAAGATGTTCACTCTCTTTTGGTTTGATGGCATTTGAAAACTATGTATTAGGACGGTTTTCTATATTTGATTAATTTCAGGCTATGAAGTTAAAAGGAGCCTAAGTTTACTTTTTTCTTCAGTCATTAGATTTTATTGCCCAGAGATTTATAGATTTTCCTAATATGGGTTTCGGCCTAATAATTCATTTTAGTTATTCTAATTTTGTATTTACTAAATTTTTTTCTTTTTTGAAATGATAGTTTTCTAATTATGTATTTACTAAAACTTTGCAAAAAAAGATTCCCCTCCTTTGTTGGCTCTCTGTTGGCTATCTTCTTTTCTTTTACATCCTGTGACTCTTGAGATGCCACGGTATTAGAGTAGTCATTCATTGTTGTTTAGTTGAGTTTGAATCTGTTAAGAGAGCTCACTAAAGAACAAACCTGGAAGTGTCAATAGTCTGTTATTTAGTCTCATAGGTTGCAACGGATTGAGTTTTTTATATTCTGTTTTTCAGTTGTAAATATATCGTTTATATTGTATTCTCAGTGTGCCTACACTAAAGAACAAAGTTGGAAGTATCAATTGTTTGTTATTTAGTCTCTTCGATTGCAACTTTGCAACTGATTGAGTTTGTTATATTCTGTTTTTCAGTTGTAAATTTATTGTTTATATTAGTGTGCCACTGTGCCTATACAAGGGCCACTGATTTGATCACTCATCAATGAAGAATGATTTATATTTGTGATCACTGTGCCTATGTAAGGGCCACTTTTATTTTAAATACAATTTTTTTAAAAAGGGAACCCGGTGACCCAACCCGGACAAAATGGGTTGGGTTGGGTTAGGTTGCCTTCATGAATAGGGTTGGTTGGGTTGGAGATTTGACCAACCCGAATTTTTGGGTTGGTCCAAAAATTACCCCTAACCCGGCCCAAACCGACCCGTGTACAGTCCTATTGCTTGGTTCAAGCATTTGAATGAAAATCTTTTTAGTGCCTCCATTTTGGTATGAAACATCCATGCTTGTTTCTTGATTTTGTGTTGTTAACTATGAAGAGTTTAAAAGATGCAGCAACCTTCTGAAAAACTTGTTGCAGGTTTGTTGCAAAGTGCTTTCTAAGATGTAAATAGTAGGCTTATTTGTAGAATATGTTCATTTGAGCTTGTTGAACAAGATTATGTTATATATGGTAGACTTATTACTGGAATTTGCTCGTGTACTTGTTGAACCAGAATGTTTTACATGTTAGGTGTCTTTCGACATATTTCCAGGATAGGCTGCACTGAATATAATCATGCTTAATATTGCCACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGATTACCAATGTTCCTGTATATAGCAGTTTTAGTGGTAAGAATGGTTCATCTAGAACAAGTTGTGCTTGTGTCATGCTACTTTGTCTGCATATTTGATGATTGCAATGGTTGTTTAATTGAATCTCAGATGGAGCCGCTGTTGGGTTAAGCTTATTATTCAGACGTTGGGCTACTAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGGTGAGTGCAAGACAAAAAAATTGAATCACATTATTAAAAACTAGAACTGAAATTTCTGTTGATTGAAACTGTCTTGTTGTGAACTTTTCACGTTCTTCTGGATACACAGAGTTATTCATGGTAACATTATCGTTCGTCTTCTGGATACAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAGCGGGGCACTCGTTTCCATCCAGGAGATTATGTTGGAATAGGGAAGGATCACACGCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTCGAAAAGCACAAGCTGAGTGGTCGCAAGTGGGTGCACATTGTACCAAAGGAGGGACATGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCTCCAGAATTGAAGACAACGACATGATGTCAAACTCTCGTTCCTTATCAAATGTTTGAATTCGTTGATGAACACGAAAATGGATGGTAGTAAATTTTCCTGTAGTTTTTCATGGTCTATAGCAAATTCTGACTGAACTTAATCACTTGGTGGAGGGCGTGTAGGCTGGCTCTTTGAATACATGTTTTTAACGTCGATCAAGCCGGTTTCGTTTCTTTTTCGGGAAAGCCTATCATACTATTCCACTTCAGCTAAGCTAATGACGAAACAATATCCAGATTTGTCTATTGATGAAGATGATACTTTAAGTAGGGGTGCACCGGACCGTGACGAATAATAGGTACCTCTGAATTCAAAGTCCTCTTTCAACCTGTTTCACAACCTGGAAATTTGTATTTAGGGATATTTTCTTAATTGACATACCAATATGTAATTGTCTGAGAATATGCATCAGCTCCAGACAACAGTTAATTGGTTGTGTTGTGGGCACTAAGTTGTTAAATTTGCTTTGAAATTTTTGTGTTTGTGGTTTATTCATGGAATGCTTTGTGATAGATCCACTGCTTAATCAAGAGCATTAGTCATTAATTGCTTATTA

mRNA sequence

TCTGTTCAACCACCGCCGCTGTTCAACCACCGTTGCTCGCACTTTCATTCGCGCATCGCAGCAGCCAAGCCAACAAGGTGTCTTTCGACATATTTCCAGGATAGGCTGCACTGAATATAATCATGCTTAATATTGCCACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGATTACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCCGCTGTTGGGTTAAGCTTATTATTCAGACGTTGGGCTACTAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAGCGGGGCACTCGTTTCCATCCAGGAGATTATGTTGGAATAGGGAAGGATCACACGCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTCGAAAAGCACAAGCTGAGTGGTCGCAAGTGGGTGCACATTGTACCAAAGGAGGGACATGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCTCCAGAATTGAAGACAACGACATGATGTCAAACTCTCGTTCCTTATCAAATGTTTGAATTCGTTGATGAACACGAAAATGGATGGTAGTAAATTTTCCTGTAGTTTTTCATGGTCTATAGCAAATTCTGACTGAACTTAATCACTTGGTGGAGGGCGTGTAGGCTGGCTCTTTGAATACATGTTTTTAACGTCGATCAAGCCGGTTTCGTTTCTTTTTCGGGAAAGCCTATCATACTATTCCACTTCAGCTAAGCTAATGACGAAACAATATCCAGATTTGTCTATTGATGAAGATGATACTTTAAGTAGGGGTGCACCGGACCGTGACGAATAATAGGTACCTCTGAATTCAAAGTCCTCTTTCAACCTGTTTCACAACCTGGAAATTTGTATTTAGGGATATTTTCTTAATTGACATACCAATATGTAATTGTCTGAGAATATGCATCAGCTCCAGACAACAGTTAATTGGTTGTGTTGTGGGCACTAAGTTGTTAAATTTGCTTTGAAATTTTTGTGTTTGTGGTTTATTCATGGAATGCTTTGTGATAGATCCACTGCTTAATCAAGAGCATTAGTCATTAATTGCTTATTA

Coding sequence (CDS)

ATGCTTAATATTGCCACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGATTACCAATGTTCCTGTATATAGCAGTTTTAGTGATGGAGCCGCTGTTGGGTTAAGCTTATTATTCAGACGTTGGGCTACTAAAAAGACAGCTGGGTCGACTAAAAATGGACGAGACTCGAAACCCAAGAATCTTGGGGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCTGGTAACATTATCGTTCGTCAGCGGGGCACTCGTTTCCATCCAGGAGATTATGTTGGAATAGGGAAGGATCACACGCTTTTTGCCCTGAAAGAAGGCTGTGTCAAGTTCGAAAAGCACAAGCTGAGTGGTCGCAAGTGGGTGCACATTGTACCAAAGGAGGGACATGTTCTTCATCCTGTTTATGCAACTACTTCTACTTCTCCAGAATTGAAGACAACGACATGA

Protein sequence

MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKWVHIVPKEGHVLHPVYATTSTSPELKTTT
Homology
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BLAST of Lcy05g013680 vs. ExPASy Swiss-Prot
Match: A9IM57 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25
Identity = 57/83 (68.67%), Postives = 66/83 (79.52%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHIVP 126
           L EG V F++ K   R +V ++P
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

[Close]
BLAST of Lcy05g013680 vs. ExPASy Swiss-Prot
Match: Q6G507 (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rpmA PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-25
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHIVP 126
           L +G V F++ K + R +V ++P
Sbjct: 62  LSKGMVSFQR-KANNRSYVSVIP 83

[Close]
BLAST of Lcy05g013680 vs. ExPASy Swiss-Prot
Match: B4RZH4 (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.5e-25
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GSTKNGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFA
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHIV 125
           LK+G V+F+      RK+V IV
Sbjct: 62  LKDGKVQFDVKGPKNRKFVSIV 83

[Close]
BLAST of Lcy05g013680 vs. ExPASy Swiss-Prot
Match: Q6G0T7 (50S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=rpmA PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-24
Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS+ K LGVKKFGGE VI GNII+RQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGETVIAGNIIIRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHIV 125
           L  G V F++ K + R +V +V
Sbjct: 62  LSNGVVSFQR-KANNRSYVSVV 82

[Close]
BLAST of Lcy05g013680 vs. ExPASy Swiss-Prot
Match: Q48NL3 (50S ribosomal protein L27 OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=rpmA PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-24
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GST+NGRDS+ K LGVK +GG+ +IPGNIIVRQRGT+FH G  VG+GKDHTLFA
Sbjct: 2   AHKKAGGSTRNGRDSEAKRLGVKMYGGQAIIPGNIIVRQRGTQFHAGYGVGMGKDHTLFA 61

Query: 103 LKEGCVKFEKHKLSGRKWVHIVPK 127
             EG +KF+     GR++V IVPK
Sbjct: 62  KVEGVIKFQVKGAFGRRYVSIVPK 85

[Close]
BLAST of Lcy05g013680 vs. ExPASy TrEMBL
Match: A0A6J1I390 (uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 3.8e-76
Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDL+TNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKT 147
           VHI+PKEGHVLHPVYATT  SPELKT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

[Close]
BLAST of Lcy05g013680 vs. ExPASy TrEMBL
Match: A0A6J1HP14 (uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC111464705 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 8.4e-76
Identity = 140/148 (94.59%), Postives = 143/148 (96.62%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDL+TNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTTT 149
           VHI+PKEGHVLHPVYATT  SPELKT T
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 148

[Close]
BLAST of Lcy05g013680 vs. ExPASy TrEMBL
Match: A0A5A7TXR2 (50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00530 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.9e-75
Identity = 138/147 (93.88%), Postives = 144/147 (97.96%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDL+TNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTT 148
           VH++PK+GHVLHPVYATTSTSP+LKTT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]
BLAST of Lcy05g013680 vs. ExPASy TrEMBL
Match: A0A1S4E0A6 (50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 1.9e-75
Identity = 138/147 (93.88%), Postives = 144/147 (97.96%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDL+TNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTT 148
           VH++PK+GHVLHPVYATTSTSP+LKTT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]
BLAST of Lcy05g013680 vs. ExPASy TrEMBL
Match: A0A6J1DS22 (uncharacterized protein LOC111023867 OS=Momordica charantia OX=3673 GN=LOC111023867 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.0e-73
Identity = 137/147 (93.20%), Postives = 143/147 (97.28%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIAT FCKRLNVKDL+TNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATAFCKRLNVKDLVTNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGIGKDHTLFALKEGC+KFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKEGCIKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTT 148
           VH++PKEGHVLHPVYA  ST+ ELKTT
Sbjct: 121 VHVIPKEGHVLHPVYA--STASELKTT 145

[Close]
BLAST of Lcy05g013680 vs. NCBI nr
Match: XP_038877023.1 (50S ribosomal protein L27-like [Benincasa hispida])

HSP 1 Score: 295.0 bits (754), Expect = 3.5e-76
Identity = 139/148 (93.92%), Postives = 144/148 (97.30%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDL+T VPVYSSFSDGAA GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEGCV FEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTTT 149
           VH++PKEGHVLHP+YATTSTSPELKTTT
Sbjct: 121 VHVIPKEGHVLHPIYATTSTSPELKTTT 148

[Close]
BLAST of Lcy05g013680 vs. NCBI nr
Match: XP_022970580.1 (uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharacterized protein LOC111469515 [Cucurbita maxima])

HSP 1 Score: 293.9 bits (751), Expect = 7.8e-76
Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDL+TNVPVYSSFSDG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKT 147
           VHI+PKEGHVLHPVYATT  SPELKT
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKT 146

[Close]
BLAST of Lcy05g013680 vs. NCBI nr
Match: XP_022964702.1 (uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964704.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_023520403.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >XP_023520404.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >KAG7019178.1 rpmA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.7 bits (748), Expect = 1.7e-75
Identity = 140/148 (94.59%), Postives = 143/148 (96.62%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDL+TNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTTT 149
           VHI+PKEGHVLHPVYATT  SPELKT T
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAT 148

[Close]
BLAST of Lcy05g013680 vs. NCBI nr
Match: XP_016901663.1 (PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribosomal protein L27-like [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 3.9e-75
Identity = 138/147 (93.88%), Postives = 144/147 (97.96%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDL+TNVPVYSSFSDGA  GL+LLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTT 148
           VH++PK+GHVLHPVYATTSTSP+LKTT
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTT 147

[Close]
BLAST of Lcy05g013680 vs. NCBI nr
Match: KAG6583414.1 (hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 291.2 bits (744), Expect = 5.0e-75
Identity = 139/148 (93.92%), Postives = 143/148 (96.62%), Query Frame = 0 

Query: 1   MLNIATTFCKRLNVKDLITNVPVYSSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKPK 60
           MLNIATTFCKRLNVKDL+TNVPVYSSF DG+A GLSLLFRRWATKKTAGSTKNGRDSKPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120
           NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHIVPKEGHVLHPVYATTSTSPELKTTT 149
           VHI+PKEGHVLHPVYA+T  SPELKT T
Sbjct: 121 VHIIPKEGHVLHPVYASTDISPELKTAT 148

[Close]
BLAST of Lcy05g013680 vs. TAIR 10
Match: AT5G15220.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 221.1 bits (562), Expect = 6.0e-58
Identity = 107/151 (70.86%), Postives = 127/151 (84.11%), Query Frame = 0 

Query: 2   LNIATTFCKRLNVKDLITNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++LIT VP Y  SS SDG++ GLSL+F+RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIVPKEGHVLHPVY--ATTSTSPELKTTT 149
           W+H+ P  GHVLHP+Y  A  + S +LKT +
Sbjct: 124 WIHVDPTGGHVLHPIYTKAAAAQSTKLKTAS 154

[Close]
BLAST of Lcy05g013680 vs. TAIR 10
Match: AT2G16930.2 (Ribosomal protein L27 family protein )

HSP 1 Score: 217.2 bits (552), Expect = 8.6e-57
Identity = 103/149 (69.13%), Postives = 122/149 (81.88%), Query Frame = 0 

Query: 2   LNIATTFCKRLNVKDLITNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++LIT VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIVPKEGHVLHPVYATTSTSPELKTTT 149
           W+H+ P  GHVLHP+Y   + +   K  T
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNT 152

[Close]
BLAST of Lcy05g013680 vs. TAIR 10
Match: AT2G16930.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 217.2 bits (552), Expect = 8.6e-57
Identity = 103/149 (69.13%), Postives = 122/149 (81.88%), Query Frame = 0 

Query: 2   LNIATTFCKRLNVKDLITNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++LIT VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIVPKEGHVLHPVYATTSTSPELKTTT 149
           W+H+ P  GHVLHP+Y   + +   K  T
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNT 152

[Close]
BLAST of Lcy05g013680 vs. TAIR 10
Match: AT2G16930.3 (Ribosomal protein L27 family protein )

HSP 1 Score: 217.2 bits (552), Expect = 8.6e-57
Identity = 103/149 (69.13%), Postives = 122/149 (81.88%), Query Frame = 0 

Query: 2   LNIATTFCKRLNVKDLITNVPVY--SSFSDGAAVGLSLLFRRWATKKTAGSTKNGRDSKP 61
           LN A + C+R+++++LIT VP Y  SS SDG++ GLSL+ +RWATKKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRK 121
           K LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHIVPKEGHVLHPVYATTSTSPELKTTT 149
           W+H+ P  GHVLHP+Y   + +   K  T
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNT 152

[Close]
BLAST of Lcy05g013680 vs. TAIR 10
Match: AT5G40950.1 (ribosomal protein large subunit 27 )

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-20
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 43  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 103 LKEGCVKFEKHKLSGRKWVHIVPKE 128
           L +G VKFEK     RK + + P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

The following BLAST results are available for this feature:
BLAST of Lcy05g013680 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A9IM571.7e-2568.6750S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)... [more]
Q6G5072.2e-2567.4750S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ... [more]
B4RZH46.5e-2569.5150S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11... [more]
Q6G0T71.9e-2467.0750S ribosomal protein L27 OS=Bartonella quintana (strain Toulouse) OX=283165 GN=... [more]
Q48NL33.2e-2464.2950S ribosomal protein L27 OS=Pseudomonas savastanoi pv. phaseolicola (strain 144... [more]
BLAST of Lcy05g013680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I3903.8e-7695.89uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515... [more]
A0A6J1HP148.4e-7694.59uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC1114647... [more]
A0A5A7TXR21.9e-7593.8850S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A1S4E0A61.9e-7593.8850S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1[more]
A0A6J1DS221.0e-7393.20uncharacterized protein LOC111023867 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
BLAST of Lcy05g013680 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038877023.13.5e-7693.9250S ribosomal protein L27-like [Benincasa hispida][more]
XP_022970580.17.8e-7695.89uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharac... [more]
XP_022964702.11.7e-7594.59uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 unchar... [more]
XP_016901663.13.9e-7593.88PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribos... [more]
KAG6583414.15.0e-7593.92hypothetical protein SDJN03_19346, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy05g013680 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G15220.16.0e-5870.86Ribosomal protein L27 family protein [more]
AT2G16930.28.6e-5769.13Ribosomal protein L27 family protein [more]
AT2G16930.18.6e-5769.13Ribosomal protein L27 family protein [more]
AT2G16930.38.6e-5769.13Ribosomal protein L27 family protein [more]
AT5G40950.11.0e-2060.00ribosomal protein large subunit 27 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001684Ribosomal protein L27PRINTSPR00063RIBOSOMALL27coord: 95..119
score: 47.08
coord: 45..69
score: 63.85
coord: 70..94
score: 57.38
IPR001684Ribosomal protein L27TIGRFAMTIGR00062TIGR00062coord: 43..124
e-value: 3.1E-35
score: 118.1
IPR001684Ribosomal protein L27PFAMPF01016Ribosomal_L27coord: 43..122
e-value: 3.2E-37
score: 126.4
IPR001684Ribosomal protein L27PANTHERPTHR15893RIBOSOMAL PROTEIN L27coord: 2..148
IPR001684Ribosomal protein L27HAMAPMF_00539Ribosomal_L27coord: 42..126
score: 25.848251
NoneNo IPR availableGENE3D2.40.50.100coord: 47..144
e-value: 1.0E-32
score: 114.4
NoneNo IPR availablePANTHERPTHR15893:SF950S RIBOSOMAL PROTEIN L27-LIKEcoord: 2..148
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 43..124
IPR018261Ribosomal protein L27, conserved sitePROSITEPS00831RIBOSOMAL_L27coord: 75..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g013680.1Lcy05g013680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016020 membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
molecular_function GO:0003735 structural constituent of ribosome