Lcy05g013610 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g013610
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Oxidative stress 3
Location	Chr05: 16447128 .. 16448077 (+)
RNA-Seq Expression	Lcy05g013610
Synteny	Lcy05g013610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATGAAGGCAACAACATGAGGGCTTTTGACATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGTAAGCAATTTTCACTATTATTTAAACCATTTTCATCATTTCTTTTTAGTTATTTGATACTCTCATTATGCCTTTTAGATGATAATATTATTTATTCGGTGTCGATTAATTTAAAATTACCTTTGTTAAAAGCCTCAAGTTTTTCGATTTTGTTCTACCGCTCTAGTGGGGCAACACATTGTGTGGATAAGGGAAAGAGTAAAAACCAGAATCACATAATCGATTGTCGAATACATTTCTATAAACAAAACAAGAAAATACAGCCGGGTTTGGTTTTTTTCTTCTTCTTTACTCTAACAAATTGGAAAACAACAACAACAGGCTGTCTCGTCTGATAACGATTTTTACCTTTTTTTTTTCAAAGACATTTGAATTTACTTTGAAAACAAAAACAAGATGAAATTTCAAAAACCCAAATGATTATCGAACGAGATGACACACTGAATGAGAAATTATTATGGGTCACGTTGTATATCGGTCAATAACGTCGTGGTGTTCGAGTATATAGGAGGGGTTTGTCGAGGTACTATTCAGGAAAGGCAAGGTCATTTGCTTGCATAGCAGATGTTCGATGTGTGGAAGACTTGAAGAAACCAAAGCATCCAGATGCAAAGAAAAGGAAGAAACATTCTGATTGCAAAGAAATAATCCATGTCCCTCCTTATCATTGTCGAAGAGTTTCAAGTTCTTCTCATTGTTCCCAGCTTCCCTTCTTTGCCACATGAATCTTTCACATTCCCTTTCTCAAACATATCATTTTGTAAATTGTATTTTTTTCTTGTTTCGAGCCAAAAAATATACATTTGAATTTGGTCGTTTCTAGTTTACGACGTACGTAAAATTGTAATGGTTGCTTTTTTTAAGCTCCGAATGATTCTCTAA

mRNA sequence

ATGGAGGATGAAGGCAACAACATGAGGGCTTTTGACATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGGGGTTTGTCGAGGTACTATTCAGGAAAGGCAAGGTCATTTGCTTGCATAGCAGATGTTCGATGTGTGGAAGACTTGAAGAAACCAAAGCATCCAGATGCAAAGAAAAGGAAGAAACATTCTGATTGCAAAGAAATAATCCATGTCCCTCCTTATCATTGTCGAAGAGTTTCAAGTTCTTCTCATTGTTCCCAGCTTCCCTTCTTTGCCACATGAATCTTTCACATTCCCTTTCTCAAACATATCATTTTGTAAATTGTATTTTTTTCTTGTTTCGAGCCAAAAAATATACATTTGAATTTGGTCGTTTCTAGTTTACGACGTACGTAAAATTGTAATGGTTGCTTTTTTTAAGCTCCGAATGATTCTCTAA

Coding sequence (CDS)

ATGGAGGATGAAGGCAACAACATGAGGGCTTTTGACATGGGTTCTCTTAGAACAAATCTTCCTCAAAAGAGGGGTTTGTCGAGGTACTATTCAGGAAAGGCAAGGTCATTTGCTTGCATAGCAGATGTTCGATGTGTGGAAGACTTGAAGAAACCAAAGCATCCAGATGCAAAGAAAAGGAAGAAACATTCTGATTGCAAAGAAATAATCCATGTCCCTCCTTATCATTGTCGAAGAGTTTCAAGTTCTTCTCATTGTTCCCAGCTTCCCTTCTTTGCCACATGA

Protein sequence

MEDEGNNMRAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRKKHSDCKEIIHVPPYHCRRVSSSSHCSQLPFFAT

Homology

[Close]

BLAST of Lcy05g013610 vs. ExPASy TrEMBL
Match: A0A0A0K2B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.2e-35
Identity = 82/95 (86.32%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MEDEGNNMRAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKR 60
          MED+GN+M AFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVR VEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDCKE-IIHVPPYHCRRVSSSSHCSQLPFFAT 95
          KKHSD KE II+VPP+HCRRV  SSHCS +PF AT
Sbjct: 61 KKHSDIKEIIINVPPFHCRRV--SSHCS-VPFIAT 92

[Close]

BLAST of Lcy05g013610 vs. ExPASy TrEMBL
Match: A0A5A7SX13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00540 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.6e-34
Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 8  MRAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRKKHSDCK 67
          M AFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVR VEDLKKPKHPDAKKRKKHSDCK
Sbjct: 1  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCK 60

Query: 68 EIIHVPPYHCRRVSSSSHCSQLPFFAT 95
          EI +VPP+HCRR  +SSHCS +PF AT
Sbjct: 61 EITNVPPFHCRR--ASSHCS-VPFIAT 84

[Close]

BLAST of Lcy05g013610 vs. ExPASy TrEMBL
Match: A0A061E0R1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_006830 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.2e-27
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 1  MEDEGNNMRAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKR 60
          MED+    RAFDMG+LR+NLPQKRGLSRYYSGKARSFACIADVRCVEDLKK +HPDAKKR
Sbjct: 1  MEDQ-TEKRAFDMGALRSNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKQEHPDAKKR 60

Query: 61 KKHSDCKEIIHVPPYHCRRVSSSSHCS 88
          KK+S+ KE+    PY CRRVSS +HC+
Sbjct: 61 KKYSNKKEMQLYTPYPCRRVSSCTHCA 86

[Close]

BLAST of Lcy05g013610 vs. ExPASy TrEMBL
Match: A0A540N5I5 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008086 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 0


Query: 4  EGNNMRAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRKKH 63
          EG NMRAFDMG+LRT LPQKRGLSRYYSGK+RSF C+ADVR VEDLKKP++PDAKKRKKH
Sbjct: 2  EGENMRAFDMGALRTGLPQKRGLSRYYSGKSRSFTCMADVRSVEDLKKPENPDAKKRKKH 61

Query: 64 SDCKE--IIHVPPYHCRRVSSSSHCS 88
          S+ K   +   PPY CRRVSS++ C+
Sbjct: 62 SERKNFPVPAYPPYPCRRVSSTTQCT 87

[Close]

BLAST of Lcy05g013610 vs. ExPASy TrEMBL
Match: M5VHW2 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G090300 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.9e-26
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 4  EGNNMRAFDMGSLRTNLPQKR-GLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRKK 63
          EG+NMRAFDMG+LRTNLPQKR GLSRYYSGK+RSF C+ DVR VEDLKKP+HPDAKKRKK
Sbjct: 2  EGDNMRAFDMGTLRTNLPQKRSGLSRYYSGKSRSFTCMDDVRSVEDLKKPEHPDAKKRKK 61

Query: 64 HSDCKE--IIHVPPYHCRRVSSSSHCS 88
          HS+ K   +   PPY CRRVSS++ C+
Sbjct: 62 HSERKNFPVPTYPPYPCRRVSSTTQCA 88

[Close]

BLAST of Lcy05g013610 vs. NCBI nr
Match: KGN43154.1 (hypothetical protein Csa_020555 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 2.5e-35
Identity = 82/95 (86.32%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MEDEGNNMRAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKR 60
          MED+GN+M AFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVR VEDLKKPKHPDAKKR
Sbjct: 1  MEDKGNSMMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKR 60

Query: 61 KKHSDCKE-IIHVPPYHCRRVSSSSHCSQLPFFAT 95
          KKHSD KE II+VPP+HCRRV  SSHCS +PF AT
Sbjct: 61 KKHSDIKEIIINVPPFHCRRV--SSHCS-VPFIAT 92

[Close]

BLAST of Lcy05g013610 vs. NCBI nr
Match: KAA0033797.1 (hypothetical protein E6C27_scaffold142G00550 [Cucumis melo var. makuwa] >TYK22337.1 hypothetical protein E5676_scaffold1428G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 76/87 (87.36%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 8  MRAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRKKHSDCK 67
          M AFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVR VEDLKKPKHPDAKKRKKHSDCK
Sbjct: 1  MMAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRSVEDLKKPKHPDAKKRKKHSDCK 60

Query: 68 EIIHVPPYHCRRVSSSSHCSQLPFFAT 95
          EI +VPP+HCRR  +SSHCS +PF AT
Sbjct: 61 EITNVPPFHCRR--ASSHCS-VPFIAT 84

[Close]

BLAST of Lcy05g013610 vs. NCBI nr
Match: KAG6588432.1 (hypothetical protein SDJN03_16997, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.4 bits (381), Expect = 4.0e-33
Identity = 76/94 (80.85%), Postives = 83/94 (88.30%), Query Frame = 0


Query: 1  MEDEGNNMRAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKR 60
          M+D+GNNM AFDM SL  NLPQKRGLSRYYSGKARSFACIAD RCVEDLKKP HPDAKKR
Sbjct: 1  MKDQGNNMMAFDMSSLGANLPQKRGLSRYYSGKARSFACIADARCVEDLKKPTHPDAKKR 60

Query: 61 KKHSDCKEIIHVPPYHCRRVSSSSHCSQLPFFAT 95
          KKHSDCK  IHV P+HCRR +SS+HCS +PFFA+
Sbjct: 61 KKHSDCKG-IHVSPHHCRR-ASSTHCS-IPFFAS 91

[Close]

BLAST of Lcy05g013610 vs. NCBI nr
Match: EOX97931.1 (Uncharacterized protein TCM_006830 [Theobroma cacao])

HSP 1 Score: 132.1 bits (331), Expect = 2.5e-27
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 0


Query: 1  MEDEGNNMRAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKR 60
          MED+    RAFDMG+LR+NLPQKRGLSRYYSGKARSFACIADVRCVEDLKK +HPDAKKR
Sbjct: 1  MEDQ-TEKRAFDMGALRSNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKQEHPDAKKR 60

Query: 61 KKHSDCKEIIHVPPYHCRRVSSSSHCS 88
          KK+S+ KE+    PY CRRVSS +HC+
Sbjct: 61 KKYSNKKEMQLYTPYPCRRVSSCTHCA 86

[Close]

BLAST of Lcy05g013610 vs. NCBI nr
Match: KAF3435745.1 (hypothetical protein FNV43_RR22837 [Rhamnella rubrinervis])

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-26
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 8  MRAFDMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRKKHSDCK 67
          MR FDMGSLRTNLP KRGLSRYYSGK+RSF C+ADV C+EDLKKP+HPDAKKRKKHSD K
Sbjct: 9  MRTFDMGSLRTNLPLKRGLSRYYSGKSRSFTCMADVHCLEDLKKPEHPDAKKRKKHSDRK 68

Query: 68 EIIHVPPYHCRRVSSSSHCS 88
          + I VP Y CRRVSSS+ C+
Sbjct: 69 D-IRVPHYPCRRVSSSTQCT 87

[Close]

BLAST of Lcy05g013610 vs. TAIR 10
Match: AT3G03170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24890.1); Has 184 Blast hits to 184 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 184; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 25/66 (37.88%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 23  KRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRKKHSDCKEIIHVPPYHCRRVSS 82
           +RGLS++Y GK++SF  +A+   VEDL KP++P   K K+  +          HCRR+S 
Sbjct: 56  RRGLSKHYKGKSQSFTTLAEALTVEDLAKPENPFNAKLKQRRESP--------HCRRLSG 113

Query: 83  SSHCSQ 89
               S+
Sbjct: 116 CGGASE 113

[Close]

BLAST of Lcy05g013610 vs. TAIR 10
Match: AT5G24890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-05
Identity = 20/49 (40.82%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 13  MGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKKPKHPDAKKRK 62
           M SL  +LP KRGLS +Y GK++SF  + ++  V+++ K ++P  K+R+
Sbjct: 98  MSSLEDSLPSKRGLSNHYKGKSKSFGNLGEIGSVKEVAKQENPLNKRRR 146

[Close]

BLAST of Lcy05g013610 vs. TAIR 10
Match: AT5G56550.1 (oxidative stress 3 )

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-05
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 12  DMGSLRTNLPQKRGLSRYYSGKARSFACIADVRCVEDLKK 52
           D+  L ++LP KRGLS++Y GK++SF  + +V+ +EDL K
Sbjct: 77  DLSDLMSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMK 116

[Close]

BLAST of Lcy05g013610 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 5.4e-04
Identity = 20/57 (35.09%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 13  MGSLRTNLPQKRGLSRYYSGKARSF--------ACIADVRCVEDLKKPKHPDAKKRK 62
           M SL   LP ++G+S+YYSGK++SF        + +     ++DL KP++P +++R+
Sbjct: 78  MESLEQVLPVRKGISKYYSGKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRRR 134

The following BLAST results are available for this feature:

BLAST of Lcy05g013610 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g013610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2B1	1.2e-35	86.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G004070 PE=4 SV=1	[more]
A0A5A7SX13	6.6e-34	87.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A061E0R1	1.2e-27	75.86	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_006830 PE=4 SV=1	[more]
A0A540N5I5	1.3e-26	73.26	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008086 PE=4 SV=1	[more]
M5VHW2	3.9e-26	73.56	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G090300 PE=4 SV=1	[more]

BLAST of Lcy05g013610 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43154.1	2.5e-35	86.32	hypothetical protein Csa_020555 [Cucumis sativus]	[more]
KAA0033797.1	1.4e-33	87.36	hypothetical protein E6C27_scaffold142G00550 [Cucumis melo var. makuwa] >TYK2233...	[more]
KAG6588432.1	4.0e-33	80.85	hypothetical protein SDJN03_16997, partial [Cucurbita argyrosperma subsp. sorori...	[more]
EOX97931.1	2.5e-27	75.86	Uncharacterized protein TCM_006830 [Theobroma cacao]	[more]
KAF3435745.1	1.2e-26	78.75	hypothetical protein FNV43_RR22837 [Rhamnella rubrinervis]	[more]

BLAST of Lcy05g013610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03170.1	1.3e-05	37.88	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G24890.1	1.7e-05	40.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G56550.1	2.2e-05	47.50	oxidative stress 3	[more]
AT5G21940.1	5.4e-04	35.09	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33172:SF38	BNAA01G05330D PROTEIN	coord: 5..87
None	No IPR available	PANTHER	PTHR33172	OS08G0516900 PROTEIN	coord: 5..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g013610.1	Lcy05g013610.1	mRNA