Lcy05g013310 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g013310
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial
LocationChr05: 15740735 .. 15744237 (-)
RNA-Seq ExpressionLcy05g013310
SyntenyLcy05g013310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCGTTTGCCGATCACTTCTCACGGCGGCGGGTTCGAGGTCCATGGCCGGCCGGACCAGAACACTCGCTCAGAAAACCCTAAATCCAGTGCCTGTTTCTTCTTCCTCCAGAGGCCTCCCTTCCTTTTCCAGGTACTTTCACTTCGATTTTTGCAATTTCATTCAGTCGTTTACGTGCCGGAATTTCTTTGCGATCTTAGTTCATTTACTGTTTTTGGACTTTGGATCCTGAACATACTTGATTTTCTTCCATTTTTCATTCGTACTTTGTTTTTCTCCAGGATTGTTTCGTCTCTGGCTACTGTGGAGTCGCTGATGCCACTCCACAGCGCCGTCGCTTCAGCTCGATTGAAGTCCAAAATCGCCGTCGACTCACATTGCTGGAGCTGGCTTTCTGAAGGTTGTTTAATTTCTCGATTTCTCTATTTAATTTGTTCTTATAAATGTGAGCATTTTTGTTTGCGATGTGGAGAGGATTTTTGTTTGTATGATTTCAAATGCATCTCCTTTATTGCTCTTGGTTAAGTTCTCAATGCGCTGCAAAATTTCTGTCAGGAATTCCTGTAATATTGCTGCTATTTCCTAATTTTATCTCTTGACTAATATATTTGTTATTAAAGGAAGTGAAAGAAGTTGGGAAATGGCCTTGTTACTTGCATAGAATATGCTCTGTGCTTTGAATTTTGATTGACTTGAACTCTTAACGCCCTTTTTGTTGGTCTCCATTCCATTCTAAGACCCTGGTCGGAAACGATTTAGTTCTTAACTTTTTGAGATGTTGACCCAATTTCAAAAACCAAAAACATAAGAATAACCAAAAAGAGTTCATACAAGCTTATGTATAAAAAATGGAAATTAAAAACAAAATTGTTACCAAATGATTCGTTAGTTATTGGCTAACATTGCATCTTTTGTATATTTGTTCGTTCTGTCATGAATTACATTCGTGAAATGACAATCCATAAATTTCATCTTGAATGGTCAGCCCTATATCTCTCGTATCATATTGAGTTGGTATCCTGACTTCATCATTTTACCTTAAATTTTAGGATTTGCAACACCTTTGTGACATAAGGGGTGAAGATGAATTGAAATCGATAATACAGTTTAGCCTCTCGTAGCTGGACGACCCTCTGTAAGACTTGCAAGGTTTTTCATCTTTCCTACTTATCTTTGTAAGATACCTTTATCACAAGGAAGAATCATTTAGACAACTGCTTTTGAGTTTTGATCATTGTATTATGCAATGCGGCCACATTTTCTAGATATGCAGAGAAGTTATTGTTTTGAGCCTCTGACCACAAACCTTGAGAGATTGGATTTTTATTAGGGATCTCTCAGTTGCTATTAACTTTGTTCAATAACATGCAATTGATTTTCCCTATGCCCTAACTATGGGATCTTGAACTGAAACTTCAGAGTTTCGTTGCAACCGATTACATTAACAATTTTCAGGCATTCTTTATCCTTTAAAGCTGGTTAGAATAGAATGATCTTAGTTACTAGCTTAAGGTGTTAGCTGTGCCAAAGATATGATGGATATATTCTTCAATGGTTTTGTTCCTAATGTCATCATTATCTGTTTCACGACCCTACTGGGATTTGAATTCAGATAGTCTAAGTTGAAGAAAGACTTCGATCCATCCCCATTAAAAACAGTGTTATGGGTTTTGGTTAATGTCTGATAGGTGTGATACTGCATATTTATACTCATATTTTAAAAGGTACAGTGAGTTTGCATGATGAATTGTGAGATGGAAGTAGTTGAAAGATGGAATTGGCTAACAGGGCAGAAGTATTTGCGAGATATACTTTTATTTTTCCTCCGTAATCTTTGTTGTTATTTTTAGTTTTCTCTTTAGTTTCGCTTTCTCTTCACTCCTTTGGGAGTTTGTATCCTGAACAATAGTCTCTTTTCATTTCATCAATGAAAAGTTTCGTATCTTGTTCAAAAAAAGATAGCCTATGAGAGGGAGGAGGGGTTGTACAATGGATTATGAGATGGAAAGTAGTTGCAAGATGTAAGGGTGCAAGTCAAAAAATGTTTAAAAAGAGAAGTCGAGTGAGGAGGTCTGAAAAAGTGTTAGGTTTAATGCTTATTTGTGGGCGTTGGTCTTGGTCACTAGATCGTTTTGTATTTATGGTCTTGGTCTTGTTCTTTTGGATTGTAGTCCATTCTTTAGTTAGTTATGGACTCCAGTTTCTCTCTTGGGTTTGTTTTCTACCTGCAGTTTGGTTTCTTAAAAAGAAAAAAAACCAATGAATTGAATTGAAACAGTTTAACCAATTAGTATCAATTGGTTCAATGTTACAGGAATTTAATCTTGAAAATGTTTTGGCCATTTTAGTGTTAAGTTCTCAAGTGGTGGTGCTCAATTTGTTCATATAAATTTTTTAAAAAGTAGCTTTGACGTTAACCATCATGGGTTGGCCCTAATGGTCAATAAGGGCCATATAAAAAATAAAGGGCTTAGAGGGAATGAGTTCAATCCATGGTGGCCACCTACCTAGGATATTTAATATACTACAAGTTTCCTTGGCAACCAAATGTAGTAGGGTCAGGCGGAGCCAGTGGAGAAAAACAAACAAATTATTTAGGGCTCGTTCGATAACGTTTCTGTTTCTCATTTTTTAAGAAACAGACTTGTTTGATAACTCATCCCTGTTTGTTGTTTCTAAATTTCTAGAAACGTTTTTAGAAAAGAGGCAAAATTTGAGAAACTACAAAAAATTGTTTCTCAAATTCTGCTTCTGTTTTTTTCCTATCTTTCGTGAATGTATCCATCTCTCTCATTCCTACACCAATCTCTTCCCTTTCGACCAGTCGCCACCGTCAACCTCTGACTACTGGTTGTCGCTGACCTCTGCCAACCAGTCGTCATTGTTGACCTCCGACTATCGATCGTCGTTGGCCTCCGTCGATCGACTACCATCGTCGACCTCTAACTACCGGTTGTCGTCGACCTTCGTTGATCGGCTGCCACCGTTGACCTCCGCCTACCGATCACAGTCAACCTCCGATTATTGGCTGCCACCAACCTCCATCGATCGACTGCTACCGTCGACCTACGACTACCGGCCTCCACCTCCGCCGTCAATTGCCACTGTCAACCTCCGACTACTAGCCTCTGCCGACCGACTGTCACTGTCGACCTCCGACTATCGGCCTCCGTTCACCAGCTGCCACTGTCGACCTCCGACTACTGATTGCCACCGACCTCCGTTGACCTCCGACTATCGGCCGCCGTCGATCTTTGACTACTGACCGTAGTCGACCAGCCACCACCGTCGTCCTCCCGACTACCGGTCGCTGTCGACCTTTGTTGATGGACCTTTGTCGATCGATTGCTACTGTCGACCTTCGACTACCAGCCGTCGTCAATCTCCGCCGATCAATCGCCACCATCGACCTTCGACTATCAGCCACTGTTGACCTTCATTTATCGACCGCCATCGTCGACCTCCGACTACTGGTCGTTGTCGACCACCACCGTAAAC

mRNA sequence

ATGGCGTCCGTTTGCCGATCACTTCTCACGGCGGCGGGTTCGAGGTCCATGGCCGGCCGGACCAGAACACTCGCTCAGAAAACCCTAAATCCAGTGCCTGTTTCTTCTTCCTCCAGAGGCCTCCCTTCCTTTTCCAGGATTGTTTCGTCTCTGGCTACTGTGGAGTCGCTGATGCCACTCCACAGCGCCGTCGCTTCAGCTCGATTGAAGTCCAAAATCGCCGTCGACTCACATTGCTGGAGCTGGCTTTCTGAAGGTGTGATACTGCATATTTATACTCATATTTTAAAAGGTACATCGCCACCGTCAACCTCTGACTACTGGTTGTCGCTGACCTCTGCCAACCAGTCGTCATTGTTGACCTCCGACTATCGATCGTCGTTGGCCTCCGTCGATCGACTACCATCGTCGACCTCTAACTACCGGTTGTCGTCGACCTTCGTTGATCGGCTGCCACCGTTGACCTCCGCCTACCGATCACAGTCAACCTCCGATTATTGGCTGCCACCAACCTCCATCGATCGACTGCTACCGTCGACCTACGACTACCGGCCTCCACCTCCGCCGTCAATTGCCACTGTCAACCTCCGACTACTAGCCTCTGCCGACCGACTGTCACTGTCGACCTCCGACTATCGGCCTCCGTTCACCAGCTGCCACTGTCGACCTCCGACTACTGATTGCCACCGACCTCCGTTGACCTCCGACTATCGGCCGCCGTCGATCTTTGACTACTGACCGTAGTCGACCAGCCACCACCGTCGTCCTCCCGACTACCGGTCGCTGTCGACCTTTGTTGATGGACCTTTGTCGATCGATTGCTACTGTCGACCTTCGACTACCAGCCGTCGTCAATCTCCGCCGATCAATCGCCACCATCGACCTTCGACTATCAGCCACTGTTGACCTTCATTTATCGACCGCCATCGTCGACCTCCGACTACTGGTCGTTGTCGACCACCACCGTAAAC

Coding sequence (CDS)

ATGGCGTCCGTTTGCCGATCACTTCTCACGGCGGCGGGTTCGAGGTCCATGGCCGGCCGGACCAGAACACTCGCTCAGAAAACCCTAAATCCAGTGCCTGTTTCTTCTTCCTCCAGAGGCCTCCCTTCCTTTTCCAGGATTGTTTCGTCTCTGGCTACTGTGGAGTCGCTGATGCCACTCCACAGCGCCGTCGCTTCAGCTCGATTGAAGTCCAAAATCGCCGTCGACTCACATTGCTGGAGCTGGCTTTCTGAAGGTGTGATACTGCATATTTATACTCATATTTTAAAAGGTACATCGCCACCGTCAACCTCTGACTACTGGTTGTCGCTGACCTCTGCCAACCAGTCGTCATTGTTGACCTCCGACTATCGATCGTCGTTGGCCTCCGTCGATCGACTACCATCGTCGACCTCTAACTACCGGTTGTCGTCGACCTTCGTTGATCGGCTGCCACCGTTGACCTCCGCCTACCGATCACAGTCAACCTCCGATTATTGGCTGCCACCAACCTCCATCGATCGACTGCTACCGTCGACCTACGACTACCGGCCTCCACCTCCGCCGTCAATTGCCACTGTCAACCTCCGACTACTAGCCTCTGCCGACCGACTGTCACTGTCGACCTCCGACTATCGGCCTCCGTTCACCAGCTGCCACTGTCGACCTCCGACTACTGATTGCCACCGACCTCCGTTGACCTCCGACTATCGGCCGCCGTCGATCTTTGACTACTGA

Protein sequence

MASVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPVSSSSRGLPSFSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGVILHIYTHILKGTSPPSTSDYWLSLTSANQSSLLTSDYRSSLASVDRLPSSTSNYRLSSTFVDRLPPLTSAYRSQSTSDYWLPPTSIDRLLPSTYDYRPPPPPSIATVNLRLLASADRLSLSTSDYRPPFTSCHCRPPTTDCHRPPLTSDYRPPSIFDY
Homology
[Close]
BLAST of Lcy05g013310 vs. ExPASy TrEMBL
Match: A0A6J1C4G8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007834 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.6e-31
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 1  MASVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPV-SSSSRGLPSFSRIVSSLATVESLMP 60
          MA+VCRSLLTAAGSRS+AGRTRTL  KTLNP+PV SSSSRG+PS SRIVSSLATVESLMP
Sbjct: 1  MAAVCRSLLTAAGSRSIAGRTRTLTPKTLNPMPVSSSSSRGVPSVSRIVSSLATVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEG 87
          LHSAVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 LHSAVASARLKSKIAVDSHCWSWLSEG 87

[Close]
BLAST of Lcy05g013310 vs. ExPASy TrEMBL
Match: A0A6J1F5F6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111441012 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.0e-29
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1  MASVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPVSSSSRGLPSFSRIVSSLATVESLMPL 60
          MASVCRS+LTA G+R + GRTRTL +KTLNP+P SSSSRGL S SRIVSSLATVESLMPL
Sbjct: 1  MASVCRSVLTATGARFVTGRTRTLVRKTLNPMPGSSSSRGLTSVSRIVSSLATVESLMPL 60

Query: 61 HSAVASARLKSKIAVDSHCWSWLSEG 87
          HSAVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 HSAVASARLKSKIAVDSHCWSWLSEG 86

[Close]
BLAST of Lcy05g013310 vs. ExPASy TrEMBL
Match: A0A6J1GKU0 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111454867 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.3e-28
Identity = 75/89 (84.27%), Postives = 78/89 (87.64%), Query Frame = 0 

Query: 1  MASVCRSLLTAA---GSRSMAGRTRTLAQKTLNPVPVSSSSRGLPSFSRIVSSLATVESL 60
          MAS+CRSLL AA   GSRSMAGRTRTLA  TL PVPVSSSSRG  S SRI SSLA+V+SL
Sbjct: 1  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSL 60

Query: 61 MPLHSAVASARLKSKIAVDSHCWSWLSEG 87
          MPLHSAVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 MPLHSAVASARLKSKIAVDSHCWSWLSEG 89

[Close]
BLAST of Lcy05g013310 vs. ExPASy TrEMBL
Match: A0A0A0K7P3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G268490 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.3e-28
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 0 

Query: 1  MASVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPV-SSSSRGLPSFSRIVSSLATVESLMP 60
          MASV RSLLTAA SRSM GRT++LA KTLNP+PV SSSSR  PSF+RIVSSLA VESLMP
Sbjct: 1  MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEG 87
          LH+AVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87

[Close]
BLAST of Lcy05g013310 vs. ExPASy TrEMBL
Match: A0A6J1I675 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471072 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-27
Identity = 75/88 (85.23%), Postives = 77/88 (87.50%), Query Frame = 0 

Query: 1  MASVCRSLLTAA--GSRSMAGRTRTLAQKTLNPVPVSSSSRGLPSFSRIVSSLATVESLM 60
          MASVCRSLL AA  GSRSMAGRTRTLA  TL PVPVSSSSRG  S SRI  SLA+V+SLM
Sbjct: 1  MASVCRSLLAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIAPSLASVDSLM 60

Query: 61 PLHSAVASARLKSKIAVDSHCWSWLSEG 87
          PLHSAVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 PLHSAVASARLKSKIAVDSHCWSWLSEG 88

[Close]
BLAST of Lcy05g013310 vs. NCBI nr
Match: XP_022136047.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 7.4e-31
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = 0 

Query: 1  MASVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPV-SSSSRGLPSFSRIVSSLATVESLMP 60
          MA+VCRSLLTAAGSRS+AGRTRTL  KTLNP+PV SSSSRG+PS SRIVSSLATVESLMP
Sbjct: 1  MAAVCRSLLTAAGSRSIAGRTRTLTPKTLNPMPVSSSSSRGVPSVSRIVSSLATVESLMP 60

Query: 61 LHSAVASARLKSKIAVDSHCWSWLSEG 87
          LHSAVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 LHSAVASARLKSKIAVDSHCWSWLSEG 87

[Close]
BLAST of Lcy05g013310 vs. NCBI nr
Match: XP_023531748.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-30
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 0 

Query: 1  MASVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPVSSSSRGLPSFSRIVSSLATVESLMPL 60
          MASVCRS+LTA GSRSMAGRTRTL +KTLNP+P SSSS+GL S SRIVSSLATVESLMPL
Sbjct: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSSSSKGLTSVSRIVSSLATVESLMPL 60

Query: 61 HSAVASARLKSKIAVDSHCWSWLSEG 87
          HSAVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 HSAVASARLKSKIAVDSHCWSWLSEG 86

[Close]
BLAST of Lcy05g013310 vs. NCBI nr
Match: XP_038887804.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [Benincasa hispida])

HSP 1 Score: 143.7 bits (361), Expect = 2.2e-30
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 1  MASVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPVSSSSRGLPSFSRIVSSLATVESLMPL 60
          MASVCRSLLTAA SRSMAGRTRTLA KTLNP+ VSSSSRG  S SRIVSSLATVESLMPL
Sbjct: 1  MASVCRSLLTAAASRSMAGRTRTLAHKTLNPLLVSSSSRGFSSVSRIVSSLATVESLMPL 60

Query: 61 HSAVASARLKSKIAVDSHCWSWLSEGVI 89
          HSAVASARLKSKIAVDSHCW WLSEG +
Sbjct: 61 HSAVASARLKSKIAVDSHCWCWLSEGFV 88

[Close]
BLAST of Lcy05g013310 vs. NCBI nr
Match: KAG7022286.1 (hypothetical protein SDJN02_16017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.9 bits (359), Expect = 3.7e-30
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 0 

Query: 1  MASVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPVSSSSRGLPSFSRIVSSLATVESLMPL 60
          MASVCRS+LTA GSR MAGRTRTL +KTLNP+P SSSS+GL S SRIVSSLATVESLMPL
Sbjct: 1  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPL 60

Query: 61 HSAVASARLKSKIAVDSHCWSWLSEG 87
          HSAVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 HSAVASARLKSKIAVDSHCWSWLSEG 86

[Close]
BLAST of Lcy05g013310 vs. NCBI nr
Match: KAG6588438.1 (hypothetical protein SDJN03_17003, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 2.4e-29
Identity = 75/85 (88.24%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 1  MASVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPVSSSSRGLPSFSRIVSSLATVESLMPL 60
          MASVCRS+LTA GSR MAGRTRTL +KTLNP+P SSSS+GL S SRIVSSLATVESLMPL
Sbjct: 1  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPL 60

Query: 61 HSAVASARLKSKIAVDSHCWSWLSE 86
          HSAVASARLKSKIAVDSHCWSWLSE
Sbjct: 61 HSAVASARLKSKIAVDSHCWSWLSE 85

[Close]
BLAST of Lcy05g013310 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-17
Identity = 50/93 (53.76%), Postives = 69/93 (74.19%), Query Frame = 0 

Query: 1  MASVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPVSSS------SRGLPSFSRIVSSLATV 60
          MAS CRS L  AGSR++  R+RT+ QK+LN  P ++S      S+ +P  SR++S+L +V
Sbjct: 1  MASFCRSAL-MAGSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRASRVLSALGSV 60

Query: 61 ESLMPLHSAVASARLKSKIAVDSHCWSWLSEGV 88
          E+++PLHSAVASARL+S IA DS CWS LS+G+
Sbjct: 61 ETMIPLHSAVASARLRSSIAADSSCWSLLSQGL 92

[Close]
BLAST of Lcy05g013310 vs. TAIR 10
Match: AT4G39300.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.1 bits (209), Expect = 8.5e-17
Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 0 

Query: 1  MASVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPVSSS------SRGLPSFSRIVSSLATV 60
          MAS CRS L  AGSR++  R+RT+ QK+LN  P ++S      S+ +P  SR++S+L +V
Sbjct: 1  MASFCRSAL-MAGSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRASRVLSALGSV 60

Query: 61 ESLMPLHSAVASARLKSKIAVDSHCWSWLSE 86
          E+++PLHSAVASARL+S IA DS CWS LS+
Sbjct: 61 ETMIPLHSAVASARLRSSIAADSSCWSLLSQ 90

[Close]
BLAST of Lcy05g013310 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 )

HSP 1 Score: 47.8 bits (112), Expect = 1.5e-05
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 0 

Query: 3  SVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPV-SSSSRGLPSFSRI---VSSLATVESLM 62
          S  RS+L AA SRS A  T   A +  +  P+  +++R  P  S +   V     VESL+
Sbjct: 8  SGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLL 67

Query: 63 PLHSAVASARLKSKIAVDSHCWSWLSEG 87
          P HSA ASA + SK+++    + WLS+G
Sbjct: 68 PYHSATASALMTSKLSISGQTYGWLSDG 95

[Close]
BLAST of Lcy05g013310 vs. TAIR 10
Match: AT4G17310.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G47455.7); Has 164 Blast hits to 164 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 4.4e-05
Identity = 38/95 (40.00%), Postives = 49/95 (51.58%), Query Frame = 0 

Query: 1  MASVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPVSSSSRGLP-------SFSRIVSSLAT 60
          MAS CR L   A   S++    TL   T +    SS+   LP       SFSR  S L  
Sbjct: 1  MASACRKLFNRA---SVSSLKSTLRSTTGSTSAASSAGFRLPSQPTRHFSFSRCPSELGC 60

Query: 61 VESLMPLHSAVASARLKSKIAVDSHCWSWLSEGVI 89
          V+SL+PLHS VA+ARL S ++  S     LS+G +
Sbjct: 61 VQSLLPLHSTVAAARLTSCLSTTSRSSRALSQGTL 92

[Close]
BLAST of Lcy05g013310 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 45.1 bits (105), Expect = 9.7e-05
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 0 

Query: 3  SVCRSLLTAAGSRSMAGRTRTLAQKTLNPVPV-SSSSRGLPSFSRI---VSSLATVESLM 62
          S  RS+L AA SRS A  T   A +  +  P+  +++R  P  S +   V     VESL+
Sbjct: 8  SGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLL 67

Query: 63 PLHSAVASARLKSKIAVDSHCWSWLSE 86
          P HSA ASA + SK+++    + WLS+
Sbjct: 68 PYHSATASALMTSKLSISGQTYGWLSD 94

The following BLAST results are available for this feature:
BLAST of Lcy05g013310 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g013310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C4G83.6e-3190.80protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica cha... [more]
A0A6J1F5F62.0e-2986.05protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbit... [more]
A0A6J1GKU06.3e-2884.27protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbit... [more]
A0A0A0K7P38.3e-2885.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G268490 PE=4 SV=1[more]
A0A6J1I6751.4e-2785.23protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Cucurbita max... [more]
BLAST of Lcy05g013310 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022136047.17.4e-3190.80protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica chara... [more]
XP_023531748.11.3e-3089.53protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo ... [more]
XP_038887804.12.2e-3088.64protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [Benincasa hispida][more]
KAG7022286.13.7e-3088.37hypothetical protein SDJN02_16017, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6588438.12.4e-2988.24hypothetical protein SDJN03_17003, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy05g013310 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G39300.11.3e-1753.76unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G39300.28.5e-1753.85unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G20585.31.5e-0538.64nuclear fusion defective 6 [more]
AT4G17310.14.4e-0540.00unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPR... [more]
AT2G20585.19.7e-0537.93nuclear fusion defective 6 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 1..87
NoneNo IPR availablePANTHERPTHR33156:SF37BNAA06G40680D PROTEINcoord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g013310.1Lcy05g013310.1mRNA