Lcy05g012510 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g012510
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr05: 14487369 .. 14487874 (+)
RNA-Seq ExpressionLcy05g012510
SyntenyLcy05g012510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGTGCATCCTTTGGTGGTAGAATCAGATGCTGTCGAGGTCGTCAAGCTCCTTAACCACGATTCCGATGATAGTTCGAAAATTTCGTTGATCATCGACGAGATAGAGGATCGTGTTAGGCAATCGAGCGTGGTGGCCTTCAATTACTGCCCTAGAAATTGTAATTTTTTGGCGCATAGGCTAGCGCGTGCTTCTACTTCTAAAGGCAATTTTGCCTTTTTTGCTTTTGATCCTTCTCAACCCTTGAGAATGGATTCCGGCCAATTTGGTTTTTGTTGTAAGGGCTGGTTTTCTCCATTTTGGAGAAAGAAGTTGTTGTACCTAACTTTTTTATTTTCCTTATTGAGCATTTTCTTTAAAAAAAAAAACGATAAAGAGAAGACTGGAAGAGAACATTTTTTTTTTTAAAATTAATGTCCATAAAAAGAGATTCACTTCCTTATGGCACATAATAATAATAATATTTTAAAAGAGTGCATGTTATAGGAAATACGGTTTATTGA

mRNA sequence

ATGATTGTGCATCCTTTGGTGGTAGAATCAGATGCTGTCGAGGTCGTCAAGCTCCTTAACCACGATTCCGATGATAGTTCGAAAATTTCGTTGATCATCGACGAGATAGAGGATCGTGTTAGGCAATCGAGCGTGGTGGCCTTCAATTACTGCCCTAGAAATTGTAATTTTTTGGCGCATAGGCTAGCGCGTGCTTCTACTTCTAAAGGCAATTTTGCCTTTTTTGCTTTTGATCCTTCTCAACCCTTGAGAATGGATTCCGGCCAATTTGGAAATACGGTTTATTGA

Coding sequence (CDS)

ATGATTGTGCATCCTTTGGTGGTAGAATCAGATGCTGTCGAGGTCGTCAAGCTCCTTAACCACGATTCCGATGATAGTTCGAAAATTTCGTTGATCATCGACGAGATAGAGGATCGTGTTAGGCAATCGAGCGTGGTGGCCTTCAATTACTGCCCTAGAAATTGTAATTTTTTGGCGCATAGGCTAGCGCGTGCTTCTACTTCTAAAGGCAATTTTGCCTTTTTTGCTTTTGATCCTTCTCAACCCTTGAGAATGGATTCCGGCCAATTTGGAAATACGGTTTATTGA

Protein sequence

MIVHPLVVESDAVEVVKLLNHDSDDSSKISLIIDEIEDRVRQSSVVAFNYCPRNCNFLAHRLARASTSKGNFAFFAFDPSQPLRMDSGQFGNTVY
Homology
[Close]
BLAST of Lcy05g012510 vs. NCBI nr
Match: XP_024046691.1 (uncharacterized protein LOC112101027 [Citrus clementina])

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-05
Identity = 28/71 (39.44%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 5   PLVVESDAVEVVKLLNHDSDDSSKISLIIDEIEDRVRQSSVVAFNYCPRNCNFLAHRLAR 64
           PL+VESD+ EVV L+N  +   ++I  +  E++DR+++ + V   + PR CN LAH LAR
Sbjct: 198 PLIVESDSQEVVDLINSKTSSRAEIFWVASEVQDRMKRLNQVKVQHTPRGCNTLAHSLAR 257

Query: 65  ASTSKGNFAFF 76
            +  + +F F+
Sbjct: 258 LALEQTDFVFW 268

[Close]
BLAST of Lcy05g012510 vs. NCBI nr
Match: XP_006473914.2 (uncharacterized protein LOC102629934 [Citrus sinensis])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 0 

Query: 5   PLVVESDAVEVVKLLNHDSDDSSKISLIIDEIEDRVRQSSVVAFNYCPRNCNFLAHRLAR 64
           PL++ESD+ EVV+L++      ++I  +I EI+DR+++   V   + PR CN LAH LA 
Sbjct: 179 PLIIESDSKEVVELISLKKSTRTEIFWVISEIQDRMKRLKKVKIQHTPRGCNSLAHSLAN 238

Query: 65  ASTSKGNFAFF 76
            +    +F F+
Sbjct: 239 LALELNDFVFW 249

[Close]
BLAST of Lcy05g012510 vs. NCBI nr
Match: XP_024046617.1 (uncharacterized protein LOC112100972 [Citrus clementina])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 25/74 (33.78%), Postives = 46/74 (62.16%), Query Frame = 0 

Query: 5   PLVVESDAVEVVKLLNHDSDDSSKISLIIDEIEDRVRQSSVVAFNYCPRNCNFLAHRLAR 64
           P+++ESD+ EVV L++ +    ++I  ++ E+ DR+++   V   Y PRNCN +AH LA+
Sbjct: 90  PVIMESDSQEVVSLMSCEKSTRTEIFWVVAEVHDRIKRLKHVKVQYTPRNCNSVAHSLAK 149

Query: 65  ASTSKGNFAFFAFD 79
            +    +F ++  D
Sbjct: 150 LALELNDFVYWVDD 163

[Close]
BLAST of Lcy05g012510 vs. NCBI nr
Match: XP_024042007.1 (uncharacterized protein LOC112099133 [Citrus clementina])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 27/71 (38.03%), Postives = 44/71 (61.97%), Query Frame = 0 

Query: 5   PLVVESDAVEVVKLLNHDSDDSSKISLIIDEIEDRVRQSSVVAFNYCPRNCNFLAHRLAR 64
           PL++ESD+ EVV+L++      ++I  +I EI+DR+++   V   + PR CN LAH LA 
Sbjct: 87  PLIIESDSKEVVELISLKKSTRTEIFWVISEIQDRMKRLKKVKIQHTPRGCNSLAHSLAN 146

Query: 65  ASTSKGNFAFF 76
            +    +F F+
Sbjct: 147 LALELNDFVFW 157

[Close]
BLAST of Lcy05g012510 vs. NCBI nr
Match: XP_024033483.1 (uncharacterized protein LOC112095606 [Citrus clementina])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 0 

Query: 6   LVVESDAVEVVKLLNHDSDDSSKISLIIDEIEDRVRQSSVVAFNYCPRNCNFLAHRLARA 65
           L+VESDA  VV L+N+    +S+I  II EI++ +R   +V+ NY  R+CN +AH LA+ 
Sbjct: 617 LIVESDAQSVVNLVNNKQGGNSEIFWIISEIQNLMRTFDLVSINYTHRSCNAIAHSLAKL 676

Query: 66  STSK-GNFAFFAFDPSQPL 84
           +  K  N  +    PSQ L
Sbjct: 677 ALEKCENVVWMGSYPSQLL 695

The following BLAST results are available for this feature:
BLAST of Lcy05g012510 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g012510 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy05g012510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_024046691.11.6e-0539.44uncharacterized protein LOC112101027 [Citrus clementina][more]
XP_006473914.21.3e-0438.03uncharacterized protein LOC102629934 [Citrus sinensis][more]
XP_024046617.11.3e-0433.78uncharacterized protein LOC112100972 [Citrus clementina][more]
XP_024042007.11.3e-0438.03uncharacterized protein LOC112099133 [Citrus clementina][more]
XP_024033483.12.3e-0441.77uncharacterized protein LOC112095606 [Citrus clementina][more]
BLAST of Lcy05g012510 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 3..65
e-value: 8.2E-11
score: 41.8
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 3..64
e-value: 3.82502E-11
score: 53.0868

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g012510.1Lcy05g012510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity