Lcy05g012450 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g012450
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	glutelin type-D 1-like
Location	Chr05: 14403994 .. 14404439 (+)
RNA-Seq Expression	Lcy05g012450
Synteny	Lcy05g012450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAAAGGATGTCGGTATTCTGCACCACTTCAAATTGATTCTTCAAGGTTGAAATATTGTTTCATAAGTTCTTTTGATTAAGATGTGGTTTAGTTTAGAGTAAATTTCTATTCGGATTAGATTCGCTTTTCAACGATAAAATTCTACTGATGAGTTATTTGGGTTAAGTGGTATTTCGGTTATGTTATATACTTTGTTTTAGTTTCAGTATCGATCTGGTAGTTTGTGTTCTGTTTCAAGCAATGGAGTAGTCGAAATCATTCAGCTGGAATCGGAGGAGAAGATGCTCACAATCAAGAAAGGAGATGTTATCGCTCTTCCTTTCGGCATGGTGACGAGGTGGTTCAACAAAGAAGCCACCAATCTGGTGGTTCTGTTCTTAAGCGACACTTCTAAGGCTAAAAAATCCGACGAGTTCACCGACCTCTTCAAGGTCGCTTAA

mRNA sequence

ATGATGAAAAGGATCAATGGAGTAGTCGAAATCATTCAGCTGGAATCGGAGGAGAAGATGCTCACAATCAAGAAAGGAGATGTTATCGCTCTTCCTTTCGGCATGGTGACGAGGTGGTTCAACAAAGAAGCCACCAATCTGGTGGTTCTGTTCTTAAGCGACACTTCTAAGGCTAAAAAATCCGACGAGTTCACCGACCTCTTCAAGGTCGCTTAA

Coding sequence (CDS)

ATGATGAAAAGGATCAATGGAGTAGTCGAAATCATTCAGCTGGAATCGGAGGAGAAGATGCTCACAATCAAGAAAGGAGATGTTATCGCTCTTCCTTTCGGCATGGTGACGAGGTGGTTCAACAAAGAAGCCACCAATCTGGTGGTTCTGTTCTTAAGCGACACTTCTAAGGCTAAAAAATCCGACGAGTTCACCGACCTCTTCAAGGTCGCTTAA

Protein sequence

MMKRINGVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFTDLFKVA

Homology

[Close]

BLAST of Lcy05g012450 vs. ExPASy TrEMBL
Match: A0A6J1IH21 (glutelin type-D 1-like OS=Cucurbita maxima OX=3661 GN=LOC111477153 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-16
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 6   NGVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFT 65
           NGV  II  ESEEK++ IKKGD IALPFG+VT WFNKEAT+LVVLFL DTSKA KS EFT
Sbjct: 67  NGVAGIILPESEEKVIAIKKGDAIALPFGVVTWWFNKEATDLVVLFLGDTSKAHKSGEFT 126

Query: 66  DLF 69
           D F
Sbjct: 127 DFF 129

[Close]

BLAST of Lcy05g012450 vs. ExPASy TrEMBL
Match: A0A0A0K666 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G281380 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-16
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 6   NGVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFT 65
           NGV  II  ESEEK++ IKKGD IALPFG+VT WFNKEAT+LVVLFL DTSKA KS EFT
Sbjct: 67  NGVAGIILPESEEKVIAIKKGDAIALPFGVVTWWFNKEATDLVVLFLGDTSKAHKSGEFT 126

Query: 66  DLF 69
           D F
Sbjct: 127 DFF 129

[Close]

BLAST of Lcy05g012450 vs. ExPASy TrEMBL
Match: A0A6J1EX25 (glutelin type-D 1-like OS=Cucurbita moschata OX=3662 GN=LOC111439037 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.1e-16
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 6   NGVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFT 65
           NGV  II  ESEEK++ IKKGD IALPFG+VT WFNKEAT+LVVLFL DTSKA KS EFT
Sbjct: 67  NGVAGIILPESEEKVIAIKKGDAIALPFGVVTWWFNKEATDLVVLFLGDTSKAHKSGEFT 126

Query: 66  DLF 69
           D F
Sbjct: 127 DFF 129

[Close]

BLAST of Lcy05g012450 vs. ExPASy TrEMBL
Match: A0A6J1E2B5 (legumin type B-like OS=Momordica charantia OX=3673 GN=LOC111025835 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.7e-16
Identity = 47/63 (74.60%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 6   NGVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFT 65
           NGV  II  ESEEK++ IKKGD IALPFG+VT W+NKEAT+LVVLFL DTSKA KS EFT
Sbjct: 67  NGVAGIILPESEEKVIAIKKGDAIALPFGVVTWWYNKEATDLVVLFLGDTSKAHKSGEFT 126

Query: 66  DLF 69
           D F
Sbjct: 127 DFF 129

[Close]

BLAST of Lcy05g012450 vs. ExPASy TrEMBL
Match: A0A6J1IBI2 (glutelin type-D 1-like OS=Cucurbita maxima OX=3661 GN=LOC111471429 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.1e-16
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 6   NGVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFT 65
           NGV  I+  E EEK++ I+KGD IALPFG+VT WFNKEAT+LVVLFL DTSKA KS EFT
Sbjct: 67  NGVAGIVLPEKEEKVIAIRKGDAIALPFGVVTWWFNKEATDLVVLFLGDTSKAHKSGEFT 126

Query: 66  DLF 69
           DLF
Sbjct: 127 DLF 129

[Close]

BLAST of Lcy05g012450 vs. NCBI nr
Match: XP_023535755.1 (glutelin type-D 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.4 bits (233), Expect = 4.3e-16
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 6   NGVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFT 65
           NGV  II  ESEEK++ IKKGD IALPFG+VT WFNKEAT+LVVLFL DTSKA KS EFT
Sbjct: 67  NGVAGIILPESEEKVIAIKKGDAIALPFGVVTWWFNKEATDLVVLFLGDTSKAHKSGEFT 126

Query: 66  DLF 69
           D F
Sbjct: 127 DFF 129

[Close]

BLAST of Lcy05g012450 vs. NCBI nr
Match: XP_004150394.1 (glutelin type-D 1 [Cucumis sativus] >KGN44409.1 hypothetical protein Csa_015780 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 4.3e-16
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 6   NGVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFT 65
           NGV  II  ESEEK++ IKKGD IALPFG+VT WFNKEAT+LVVLFL DTSKA KS EFT
Sbjct: 67  NGVAGIILPESEEKVIAIKKGDAIALPFGVVTWWFNKEATDLVVLFLGDTSKAHKSGEFT 126

Query: 66  DLF 69
           D F
Sbjct: 127 DFF 129

[Close]

BLAST of Lcy05g012450 vs. NCBI nr
Match: XP_022932542.1 (glutelin type-D 1-like [Cucurbita moschata])

HSP 1 Score: 94.4 bits (233), Expect = 4.3e-16
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 6   NGVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFT 65
           NGV  II  ESEEK++ IKKGD IALPFG+VT WFNKEAT+LVVLFL DTSKA KS EFT
Sbjct: 67  NGVAGIILPESEEKVIAIKKGDAIALPFGVVTWWFNKEATDLVVLFLGDTSKAHKSGEFT 126

Query: 66  DLF 69
           D F
Sbjct: 127 DFF 129

[Close]

BLAST of Lcy05g012450 vs. NCBI nr
Match: XP_022976927.1 (glutelin type-D 1-like [Cucurbita maxima])

HSP 1 Score: 94.4 bits (233), Expect = 4.3e-16
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 6   NGVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFT 65
           NGV  II  ESEEK++ IKKGD IALPFG+VT WFNKEAT+LVVLFL DTSKA KS EFT
Sbjct: 67  NGVAGIILPESEEKVIAIKKGDAIALPFGVVTWWFNKEATDLVVLFLGDTSKAHKSGEFT 126

Query: 66  DLF 69
           D F
Sbjct: 127 DFF 129

[Close]

BLAST of Lcy05g012450 vs. NCBI nr
Match: KAG6592225.1 (Glutelin type-D 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025082.1 Glutelin type-B 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.4 bits (233), Expect = 4.3e-16
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 6   NGVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFT 65
           NGV  II  ESEEK++ IKKGD IALPFG+VT WFNKEAT+LVVLFL DTSKA KS EFT
Sbjct: 67  NGVAGIILPESEEKVIAIKKGDAIALPFGVVTWWFNKEATDLVVLFLGDTSKAHKSGEFT 126

Query: 66  DLF 69
           D F
Sbjct: 127 DFF 129

[Close]

BLAST of Lcy05g012450 vs. TAIR 10
Match: AT2G28680.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 4.3e-14
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 7   GVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFTD 66
           G   I+  E EEK++ IKKGD IALPFG+VT WFN E T LVVLFL +T K  K+ +FTD
Sbjct: 68  GTAGIVLPEKEEKVIAIKKGDSIALPFGVVTWWFNNEDTELVVLFLGETHKGHKAGQFTD 127

Query: 67  LF 69
            +
Sbjct: 128 FY 129

[Close]

BLAST of Lcy05g012450 vs. TAIR 10
Match: AT1G07750.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-12
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 6   NGVVEIIQLESEEKMLTIKKGDVIALPFGMVTRWFNKEATNLVVLFLSDTSKAKKSDEFT 65
           +G   I+  E EEK++ IK+GD IALPFG+VT WFN E   LV+LFL +T K  K+ +FT
Sbjct: 67  SGTAGIVLPEKEEKVIAIKQGDSIALPFGVVTWWFNNEDPELVILFLGETHKGHKAGQFT 126

Query: 66  DLF 69
           + +
Sbjct: 127 EFY 129

The following BLAST results are available for this feature:

BLAST of Lcy05g012450 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g012450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IH21	2.1e-16	76.19	glutelin type-D 1-like OS=Cucurbita maxima OX=3661 GN=LOC111477153 PE=3 SV=1	[more]
A0A0A0K666	2.1e-16	76.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G281380 PE=3 SV=1	[more]
A0A6J1EX25	2.1e-16	76.19	glutelin type-D 1-like OS=Cucurbita moschata OX=3662 GN=LOC111439037 PE=3 SV=1	[more]
A0A6J1E2B5	4.7e-16	74.60	legumin type B-like OS=Momordica charantia OX=3673 GN=LOC111025835 PE=4 SV=1	[more]
A0A6J1IBI2	6.1e-16	73.02	glutelin type-D 1-like OS=Cucurbita maxima OX=3661 GN=LOC111471429 PE=3 SV=1	[more]

BLAST of Lcy05g012450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535755.1	4.3e-16	76.19	glutelin type-D 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_004150394.1	4.3e-16	76.19	glutelin type-D 1 [Cucumis sativus] >KGN44409.1 hypothetical protein Csa_015780 ...	[more]
XP_022932542.1	4.3e-16	76.19	glutelin type-D 1-like [Cucurbita moschata]	[more]
XP_022976927.1	4.3e-16	76.19	glutelin type-D 1-like [Cucurbita maxima]	[more]
KAG6592225.1	4.3e-16	76.19	Glutelin type-D 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025082.1...	[more]

BLAST of Lcy05g012450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28680.1	4.3e-14	58.06	RmlC-like cupins superfamily protein	[more]
AT1G07750.1	1.4e-12	50.79	RmlC-like cupins superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006045	Cupin 1	PFAM	PF00190	Cupin_1	coord: 20..68 e-value: 2.9E-6 score: 26.9
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10	Jelly Rolls	coord: 7..71 e-value: 1.9E-8 score: 35.9
None	No IPR available	PANTHER	PTHR31189	OS03G0336100 PROTEIN-RELATED	coord: 4..69
None	No IPR available	PANTHER	PTHR31189:SF67	GLUTELIN TYPE-B 5-LIKE	coord: 4..69
IPR011051	RmlC-like cupin domain superfamily	SUPERFAMILY	51182	RmlC-like cupins	coord: 15..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g012450.1	Lcy05g012450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0045735	nutrient reservoir activity