Lcy05g012400 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g012400
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Location	Chr05: 14320285 .. 14321257 (+)
RNA-Seq Expression	Lcy05g012400
Synteny	Lcy05g012400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAATATGAAGAAATTTTTTGACAAGTATTGGGGTTCAGTTGAAAAGATTAATAAGTTGATATTTATTGTTGTGGTGCTTGATCCTCGTTACAAGTTGGATTCTATGTCATTTTCCTTTTCTACCGTTTATGATGCTAGTGTGGTTAAAGAGATGGTTGAGAATGTCAAGATATATTTATATCGTCTCTATGAATTTTACAAATCTCATGACAAAACCAATCGAGATAGTAGTAGTACTACTATTAGTAGTGGTGGTGGTTCTCAACAATCAAGCGTCACTAGTATAGACACTGCAGATGATGAAGATATGCAGACGAATTATAAGAAAAGAAGAGAAGATGAGAGTTCATTGGAAGTGGAGAATGACTTGGATCGATATTTGTCTGACAAGAATGAGGAACTTAATGATAGTTTTGATGTTTCGTATTAGTGGAAAGTGAATGGTCATAGATATCGCATTTTATCAAAAATTGTCCAAGATGTTTTGGTTGTTTCTGTGTCTACTGTGGCTTCTGAATCTGCATTTAGTATGGGGGGTCGAGTCCTTGATTCCTTTAGAAGTTCTTTGACTCCTAAAACGGTGGAGGTTTTGATATGTACGTAAAATTGGATTCGAGGCAACTCAATGTTATTAGATCTTCCTCCACAGCTTGAAGAGTTAGAGACTTGTGATAAAATTGAGTCAGGTATTTAATTATTTTCTAATTGTTGTGGATCTAAACTCTAAAGTGTACTATGATCAAATAATATATATTTAGTTATGTTTGGTTTGATTTATTTTTTTAGATATTACATCGTCCTCTGTTGTTGGAAAATAATGGATTTGAGCGGATTGATGATTTTAGTAGTAAGCTTTTCTATCATTATCTTGATAAATATCAAATTCTTTTGTTATGTACATTTCTTTTTAATCTTAAATTGTGTTTATTGTATTTGTACTTTCAGGATTTCGCATTAAAAGGTGA

mRNA sequence

ATGGCTTCCAATATGAAGAAATTTTTTGACAAGTATTGGGGTTCAGTTGAAAAGATTAATAAGTTGATATTTATTGTTGTGGTGCTTGATCCTCGTTACAAGTTGGATTCTATGTCATTTTCCTTTTCTACCGTTTATGATGCTAGTGTGGTTAAAGAGATGGTTGAGAATGTCAAGATATATTTATATCGTCTCTATGAATTTTACAAATCTCATGACAAAACCAATCGAGATAGTAGTAGTACTACTATTAGTAGTGGTGGTGGTTCTCAACAATCAAGCGTCACTAGTATAGACACTGCAGATGATGAAGATATGCAGACGAATTATAAGAAAAGAAGAGAAGATGAGAGTTCATTGGAAATATTACATCGTCCTCTGTTGTTGGAAAATAATGGATTTGAGCGGATTGATGATTTTAGTAGATTTCGCATTAAAAGGTGA

Coding sequence (CDS)

ATGGCTTCCAATATGAAGAAATTTTTTGACAAGTATTGGGGTTCAGTTGAAAAGATTAATAAGTTGATATTTATTGTTGTGGTGCTTGATCCTCGTTACAAGTTGGATTCTATGTCATTTTCCTTTTCTACCGTTTATGATGCTAGTGTGGTTAAAGAGATGGTTGAGAATGTCAAGATATATTTATATCGTCTCTATGAATTTTACAAATCTCATGACAAAACCAATCGAGATAGTAGTAGTACTACTATTAGTAGTGGTGGTGGTTCTCAACAATCAAGCGTCACTAGTATAGACACTGCAGATGATGAAGATATGCAGACGAATTATAAGAAAAGAAGAGAAGATGAGAGTTCATTGGAAATATTACATCGTCCTCTGTTGTTGGAAAATAATGGATTTGAGCGGATTGATGATTTTAGTAGATTTCGCATTAAAAGGTGA

Protein sequence

MASNMKKFFDKYWGSVEKINKLIFIVVVLDPRYKLDSMSFSFSTVYDASVVKEMVENVKIYLYRLYEFYKSHDKTNRDSSSTTISSGGGSQQSSVTSIDTADDEDMQTNYKKRREDESSLEILHRPLLLENNGFERIDDFSRFRIKR

Homology

[Close]

BLAST of Lcy05g012400 vs. ExPASy Swiss-Prot
Match: Q75HY5 (Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0583200 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-04
Identity = 29/85 (34.12%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 2   ASNMKKFFDKYWGSVEKINKLIFIVVVLDPRYKLDSMSFSFSTVYDASVVKEMVENVKIY 61
           A  M + FDKYW   +  N ++ I VV+DPR+K+  + FS+S ++     K  V+ V   
Sbjct: 538 AKIMHERFDKYW---KDCNLVLAIAVVMDPRFKMKLVEFSYSKIHSVEAAK-YVKVVDDA 597

Query: 62  LYRLYEFYKSHDKTNRDSSSTTISS 87
           ++ LY  Y +  + NRD+  T  S+
Sbjct: 598 IHELYSEYATQGEANRDAHVTDNSA 618

[Close]

BLAST of Lcy05g012400 vs. ExPASy TrEMBL
Match: A0A5A7UR09 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001560 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 61/125 (48.80%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MASNMKKFFDKYWGSVEKINKLIFIVVVLDPRYKLDSMSFSFSTVYDASVVKEMVENVKI 60
           MA NMK  FDKYWGS+EK+NKL+F+ +V+DPRYKL  +++  S VY++ VVK++VE+VKI
Sbjct: 496 MAMNMKAKFDKYWGSLEKMNKLMFVAMVIDPRYKLKYLTYCLSNVYESDVVKDVVESVKI 555

Query: 61  YLYRLYEFYKSHDKTNRDSSSTTIS-SGGGSQQSSVTSIDTADDEDMQ--TNYKKRREDE 120
           YLYRLY+FYKS     + +SST I  S    +QS+  +++  +DE++     +   RE+E
Sbjct: 556 YLYRLYDFYKS-----QHNSSTQIGHSTDDLKQSNNVTMEVENDEEVDPWITFCALREEE 615

Query: 121 SSLEI 123
           SS+E+
Sbjct: 616 SSMEV 615

[Close]

BLAST of Lcy05g012400 vs. ExPASy TrEMBL
Match: A0A5D3DSA5 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00240 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 61/125 (48.80%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MASNMKKFFDKYWGSVEKINKLIFIVVVLDPRYKLDSMSFSFSTVYDASVVKEMVENVKI 60
           MA NMK  FDKYWGS+EK+NKL+F+ +V+DPRYKL  +++  S VY++ VVK++VE+VKI
Sbjct: 480 MAMNMKAKFDKYWGSLEKMNKLMFVAMVIDPRYKLKYLTYCLSNVYESDVVKDVVESVKI 539

Query: 61  YLYRLYEFYKSHDKTNRDSSSTTIS-SGGGSQQSSVTSIDTADDEDMQ--TNYKKRREDE 120
           YLYRLY+FYKS     + +SST I  S    +QS+  +++  +DE++     +   RE+E
Sbjct: 540 YLYRLYDFYKS-----QHNSSTQIGHSTDDLKQSNNVTMEVENDEEVDPWITFCALREEE 599

Query: 121 SSLEI 123
           SS+E+
Sbjct: 600 SSMEV 599

[Close]

BLAST of Lcy05g012400 vs. ExPASy TrEMBL
Match: A0A5A7VEY8 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001570 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 1   MASNMKKFFDKYWGSVEKINKLIFIVVVLDPRYKLDSMSFSFSTVYDASVVKEMVENVKI 60
           M+ NMK  FDKYWGS+EK+NKL+F+ +V+DPRYKL  +++  S VY+  VVK++VE+VKI
Sbjct: 1   MSMNMKTKFDKYWGSLEKMNKLMFVAMVIDPRYKLKYLTYCLSNVYERDVVKDVVESVKI 60

Query: 61  YLYRLYEFYKS-HDKTNRDSSSTTISSGGGSQQSSVTSIDTADDE--DMQTNYKKRREDE 120
           YLYRLY+FYKS H+ + +   ST        +QS+  +++  +DE  D    +   RE+E
Sbjct: 61  YLYRLYDFYKSQHNPSTQIGHST-----DDLKQSNNVTMEVENDEEIDQWITFCALREEE 120

Query: 121 SSLEI 123
           SS+E+
Sbjct: 121 SSMEV 120

[Close]

BLAST of Lcy05g012400 vs. ExPASy TrEMBL
Match: A0A5D3CE24 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold994G00200 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.9e-19
Identity = 59/125 (47.20%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MASNMKKFFDKYWGSVEKINKLIFIVVVLDPRYKLDSMSFSFSTVYDASVVKEMVENVKI 60
           MA NMK  FDKYWGS+EK+NKL+F+ +V+DPRYKL  +++  S VY++ VVK++VE+VKI
Sbjct: 102 MAMNMKAKFDKYWGSLEKMNKLMFVAMVIDPRYKLKYLTYCLSNVYESDVVKDVVESVKI 161

Query: 61  YLYRLYEFYKSHDKTNRDSSSTTIS-SGGGSQQSSVTSIDTADDEDMQ--TNYKKRREDE 120
           YLYRLY+FY+S     + + ST I  S    +QS+  +++  +DE++     +   RE+E
Sbjct: 162 YLYRLYDFYRS-----QHTPSTQIGHSTDDLKQSNNVTMEVENDEEVDPWITFCALREEE 221

Query: 121 SSLEI 123
           SS+E+
Sbjct: 222 SSMEV 221

[Close]

BLAST of Lcy05g012400 vs. ExPASy TrEMBL
Match: A0A5A7UAH5 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001570 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.5e-19
Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 1   MASNMKKFFDKYWGSVEKINKLIFIVVVLDPRYKLDSMSFSFSTVYDASVVKEMVENVKI 60
           MA NMK  FDKYW S+EK+NKL+F+ +V+DPRYKL  +++  S VY++ VVK++VE+VKI
Sbjct: 1   MAMNMKAKFDKYWDSLEKMNKLMFVAMVIDPRYKLKYLTYCLSNVYESDVVKDVVESVKI 60

Query: 61  YLYRLYEFYKSHDKTNRDSSSTTIS-SGGGSQQSSVTSIDTADDEDMQ--TNYKKRREDE 120
           YLYRLY+FYKS     + + ST I  S    +QS+  +++  +DE++     +   RE+E
Sbjct: 61  YLYRLYDFYKS-----QHTPSTQIGHSTDDLKQSNNVTMEVENDEEVDPWITFCALREEE 120

Query: 121 SSLEI 123
           SS+E+
Sbjct: 121 SSMEV 120

[Close]

BLAST of Lcy05g012400 vs. NCBI nr
Match: XP_023536246.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.3 bits (277), Expect = 7.1e-21
Identity = 63/146 (43.15%), Postives = 97/146 (66.44%), Query Frame = 0


Query: 1   MASNMKKFFDKYWGSVEKINKLIFIVVVLDPRYKLDSMSFSFSTVYDASVVKEMVENVKI 60
           M+SNMK  ++KYWGSVE+INKLIFI VVLDPRYKLD +SF FS +Y+ ++ K MV+ +K 
Sbjct: 255 MSSNMKVKYEKYWGSVERINKLIFIAVVLDPRYKLDYISFCFSNIYEDAMAKVMVDGIKN 314

Query: 61  YLYRLYEFYKSHDKT-NRDSSSTTISSGGGSQQSSVTSIDTADDEDMQ------TNYKKR 120
           YL RLY++YK ++   + + S + ++S   S +     +DT D+E++       + YK+R
Sbjct: 315 YLIRLYDYYKFYNNAQDHNQSKSRLTSNSMSMK-----MDTIDEENLSGSILVLSRYKRR 374

Query: 121 REDESSLEILHRPLLLENNGFERIDD 140
           RE++ SLE+ +      ++  E +DD
Sbjct: 375 REEQHSLELKNDVDRYLSDPSEEVDD 395

[Close]

BLAST of Lcy05g012400 vs. NCBI nr
Match: TYK26463.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 4.6e-20
Identity = 61/125 (48.80%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MASNMKKFFDKYWGSVEKINKLIFIVVVLDPRYKLDSMSFSFSTVYDASVVKEMVENVKI 60
           MA NMK  FDKYWGS+EK+NKL+F+ +V+DPRYKL  +++  S VY++ VVK++VE+VKI
Sbjct: 480 MAMNMKAKFDKYWGSLEKMNKLMFVAMVIDPRYKLKYLTYCLSNVYESDVVKDVVESVKI 539

Query: 61  YLYRLYEFYKSHDKTNRDSSSTTIS-SGGGSQQSSVTSIDTADDEDMQ--TNYKKRREDE 120
           YLYRLY+FYKS     + +SST I  S    +QS+  +++  +DE++     +   RE+E
Sbjct: 540 YLYRLYDFYKS-----QHNSSTQIGHSTDDLKQSNNVTMEVENDEEVDPWITFCALREEE 599

Query: 121 SSLEI 123
           SS+E+
Sbjct: 600 SSMEV 599

[Close]

BLAST of Lcy05g012400 vs. NCBI nr
Match: KAA0056011.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 4.6e-20
Identity = 61/125 (48.80%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MASNMKKFFDKYWGSVEKINKLIFIVVVLDPRYKLDSMSFSFSTVYDASVVKEMVENVKI 60
           MA NMK  FDKYWGS+EK+NKL+F+ +V+DPRYKL  +++  S VY++ VVK++VE+VKI
Sbjct: 496 MAMNMKAKFDKYWGSLEKMNKLMFVAMVIDPRYKLKYLTYCLSNVYESDVVKDVVESVKI 555

Query: 61  YLYRLYEFYKSHDKTNRDSSSTTIS-SGGGSQQSSVTSIDTADDEDMQ--TNYKKRREDE 120
           YLYRLY+FYKS     + +SST I  S    +QS+  +++  +DE++     +   RE+E
Sbjct: 556 YLYRLYDFYKS-----QHNSSTQIGHSTDDLKQSNNVTMEVENDEEVDPWITFCALREEE 615

Query: 121 SSLEI 123
           SS+E+
Sbjct: 616 SSMEV 615

[Close]

BLAST of Lcy05g012400 vs. NCBI nr
Match: KAA0065770.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa] >TYJ96510.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-19
Identity = 59/125 (47.20%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 1   MASNMKKFFDKYWGSVEKINKLIFIVVVLDPRYKLDSMSFSFSTVYDASVVKEMVENVKI 60
           M+ NMK  FDKYWGS+EK+NKL+F+ +V+DPRYKL  +++  S VY+  VVK++VE+VKI
Sbjct: 1   MSMNMKTKFDKYWGSLEKMNKLMFVAMVIDPRYKLKYLTYCLSNVYERDVVKDVVESVKI 60

Query: 61  YLYRLYEFYKS-HDKTNRDSSSTTISSGGGSQQSSVTSIDTADDE--DMQTNYKKRREDE 120
           YLYRLY+FYKS H+ + +   ST        +QS+  +++  +DE  D    +   RE+E
Sbjct: 61  YLYRLYDFYKSQHNPSTQIGHST-----DDLKQSNNVTMEVENDEEIDQWITFCALREEE 120

Query: 121 SSLEI 123
           SS+E+
Sbjct: 121 SSMEV 120

[Close]

BLAST of Lcy05g012400 vs. NCBI nr
Match: TYK09522.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 3.9e-19
Identity = 59/125 (47.20%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MASNMKKFFDKYWGSVEKINKLIFIVVVLDPRYKLDSMSFSFSTVYDASVVKEMVENVKI 60
           MA NMK  FDKYWGS+EK+NKL+F+ +V+DPRYKL  +++  S VY++ VVK++VE+VKI
Sbjct: 102 MAMNMKAKFDKYWGSLEKMNKLMFVAMVIDPRYKLKYLTYCLSNVYESDVVKDVVESVKI 161

Query: 61  YLYRLYEFYKSHDKTNRDSSSTTIS-SGGGSQQSSVTSIDTADDEDMQ--TNYKKRREDE 120
           YLYRLY+FY+S     + + ST I  S    +QS+  +++  +DE++     +   RE+E
Sbjct: 162 YLYRLYDFYRS-----QHTPSTQIGHSTDDLKQSNNVTMEVENDEEVDPWITFCALREEE 221

Query: 121 SSLEI 123
           SS+E+
Sbjct: 222 SSMEV 221

The following BLAST results are available for this feature:

BLAST of Lcy05g012400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q75HY5	2.2e-04	34.12	Zinc finger BED domain-containing protein RICESLEEPER 3 OS=Oryza sativa subsp. j...	[more]

BLAST of Lcy05g012400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UR09	2.2e-20	48.80	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3DSA5	2.2e-20	48.80	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7VEY8	1.4e-19	47.20	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3CE24	1.9e-19	47.20	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7UAH5	5.5e-19	47.20	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]

BLAST of Lcy05g012400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536246.1	7.1e-21	43.15	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucurbita pepo sub...	[more]
TYK26463.1	4.6e-20	48.80	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0056011.1	4.6e-20	48.80	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0065770.1	3.0e-19	47.20	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
TYK09522.1	3.9e-19	47.20	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]

BLAST of Lcy05g012400 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025525	hAT-like transposase, RNase-H fold	PFAM	PF14372	DUF4413	coord: 1..69 e-value: 2.8E-13 score: 50.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..103
None	No IPR available	PANTHER	PTHR23272:SF137	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE	coord: 1..112
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 1..112
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g012400.1	Lcy05g012400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003677	DNA binding