Lcy05g011780 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g011780
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ribonuclease H
Location	Chr05: 13443047 .. 13444319 (-)
RNA-Seq Expression	Lcy05g011780
Synteny	Lcy05g011780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTCCACGGCGTCTCAGACGCAATTAGGTGTCGCGTCTTCGCTTTCACTATGATAGGATCAGCCAAACAGTGGTTTGAAAGGTTGGAAAGGAGATCCATCAGTTCTTTCAAGGAATTAGCCCAAGCATTCCTCTCGCAGTTCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACTGTCAAACAACAACCAGGTGAGAGCTTGCGTGATTATATAACACGTTTTAATGAGGAAGCACTGCAGGTTGAGGGATATAATGAGGGAGCAGCCCTAGTAGCCACTTGTGTGGGCCAAGGTCGGAGGGATCGGGCCTTGGCCCGAGGCCGAGGCCGACCACTCACCCACTTGCGTGGGTCGAGTCCTTCCCCTCCGTTCGGTCTCTACTGCACCTGGCCGCCCCGATTCCACCTGGTTCAACCCGAATCACCTCCGAATGCCTAAAAACCCTAGAGTAGGAACAGGTATTTAAACCCTTCTTCATCACTGAAGAAAGAATCCCGAACTTTATTCTCTGGACTCTCCTCTTACTCTTCCTCTCTTGCTTCCCATTGTTCTGCTTGTTGACTTAAGCATCGGAGGCGGTGTGGCAAGCACCACACTGGTGTGCAGGTTTTTTCTGTCTTGCAGGCCACGTCTTCCCCCCTCTCAAACAAATTTACCGTTGGTGGCACGTGAAGGTCAGGTGAGTTATCCCTGTGTCCAGATTTTGCCATCAACACCTAGTAAGATTAAATTTAGAATGTCGGGTCGTTATAAAAAAAGTGTTTTTTTTTCAAGTGAACTTATATTGAAAACGTATTTAATTATTGAATTAAAATTATTTAAATGAATTCAGTATAAAAGTTCATTTTTCAATAATTATAATTAATTACTTATTGATTATTTATAATCAATTAATTATTTCTTTGTGTTTCATTATAATAAATAAATAACCATATTAGTATTAAAATATTTATCTAATTAATTTGGGTAAAATACCTTTTTGGTCTCTCATGTTTCGTGTCAGTTTCCAATAGGTCCCTAAGTTTCAAACTTGTTCCATTACAAAACTCACAAGAACACACAAGAGAAGAAAATTGTTCTCTCTAATGAAAATTCTGGATCAAAAACTCCCAATATAAATTCATAAACTTACCTTGCACTTTATGACCATGTATAATAATTGTCCTACATGAATGTATACTTAATTAACTAGTAACTCATAAAAGTTTATAACATAGTAACTTATTTAGCTTATCACATCATAAATCTAGCTTAA

mRNA sequence

ATGGACTTCCACGGCGTCTCAGACGCAATTAGGTGTCGCGTCTTCGCTTTCACTATGATAGGATCAGCCAAACAGTGGTTTGAAAGGTTGGAAAGGAGATCCATCAGTTCTTTCAAGGAATTAGCCCAAGCATTCCTCTCGCAGTTCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACTGTCAAACAACAACCAGCTTAA

Coding sequence (CDS)

ATGGACTTCCACGGCGTCTCAGACGCAATTAGGTGTCGCGTCTTCGCTTTCACTATGATAGGATCAGCCAAACAGTGGTTTGAAAGGTTGGAAAGGAGATCCATCAGTTCTTTCAAGGAATTAGCCCAAGCATTCCTCTCGCAGTTCATGGGAGCCAGAGAACAGCGCAAGCCTCACATCAACCTCTTAACTGTCAAACAACAACCAGCTTAA

Protein sequence

MDFHGVSDAIRCRVFAFTMIGSAKQWFERLERRSISSFKELAQAFLSQFMGAREQRKPHINLLTVKQQPA

Homology

[Close]

BLAST of Lcy05g011780 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.3e-14
Identity = 39/67 (58.21%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 2   DFHGVSDAIRCRVFAFTMIGSAKQWFERLERRSISSFKELAQAFLSQFMGAREQRKPHIN 61
           D + + +AIRCRVF+FT+ GSA+ WF +L+R SISSFKELA+AF++QF+G R + KP   
Sbjct: 35  DIYDIREAIRCRVFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTY 94

Query: 62  LLTVKQQ 69
           LLT+KQ+
Sbjct: 95  LLTIKQK 101

[Close]

BLAST of Lcy05g011780 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.3e-14
Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1   MDFHGVSDAIRCRVFAFTMIGSAKQWFERLERRSISSFKELAQAFLSQFMGAREQRKPHI 60
           MD +GVSDAIRCRVF+ T+ GSA+ WF +L+R SISSFK LA+AF++QF+G R + +P  
Sbjct: 123 MDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSRPVA 182

Query: 61  NLLTVKQQPA 71
            LLT+KQ+ A
Sbjct: 183 YLLTIKQRTA 192

[Close]

BLAST of Lcy05g011780 vs. ExPASy TrEMBL
Match: A0A6J1D3B7 (uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016619 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 37/67 (55.22%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 2   DFHGVSDAIRCRVFAFTMIGSAKQWFERLERRSISSFKELAQAFLSQFMGAREQRKPHIN 61
           D +G+++AIRCRVF+FT+ GS + WF++L+R+SISSFKELA+AF++QF G   + +P   
Sbjct: 35  DIYGITEAIRCRVFSFTLTGSTRIWFQQLKRKSISSFKELARAFVTQFAGGWNRSRPVAY 94

Query: 62  LLTVKQQ 69
           LLT+KQ+
Sbjct: 95  LLTIKQK 101

[Close]

BLAST of Lcy05g011780 vs. ExPASy TrEMBL
Match: A0A6J1D7D2 (uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018307 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MDFHGVSDAIRCRVFAFTMIGSAKQWFERLERRSISSFKELAQAFLSQFMGAREQRKPHI 60
           MD +GVS+A++CRVF+ T+ GSA+ WF +L+R SISSFK LA+AF++QF+G R + +P  
Sbjct: 38  MDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVA 97

Query: 61  NLLTVKQQ 69
            LLT+KQ+
Sbjct: 98  YLLTIKQR 105

[Close]

BLAST of Lcy05g011780 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.8e-13
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MDFHGVSDAIRCRVFAFTMIGSAKQWFERLERRSISSFKELAQAFLSQFMGAREQRKPHI 60
           MD +GVS+A+RCRVF+ T+ GSA+ WF +L+R SISSFK LA+AF++QF+G R + +P  
Sbjct: 218 MDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVA 277

Query: 61  NLLTVKQQ 69
            LLT+KQ+
Sbjct: 278 YLLTIKQR 285

[Close]

BLAST of Lcy05g011780 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 8.9e-14
Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 1   MDFHGVSDAIRCRVFAFTMIGSAKQWFERLERRSISSFKELAQAFLSQFMGAREQRKPHI 60
           MD +GVSDAIRCRVF+ T+ GSA+ WF +L+R SISSFK LA+AF++QF+G R + +P  
Sbjct: 123 MDIYGVSDAIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSRPVA 182

Query: 61  NLLTVKQQPA 71
            LLT+KQ+ A
Sbjct: 183 YLLTIKQRTA 192

[Close]

BLAST of Lcy05g011780 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 8.9e-14
Identity = 39/67 (58.21%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 2   DFHGVSDAIRCRVFAFTMIGSAKQWFERLERRSISSFKELAQAFLSQFMGAREQRKPHIN 61
           D + + +AIRCRVF+FT+ GSA+ WF +L+R SISSFKELA+AF++QF+G R + KP   
Sbjct: 35  DIYDIREAIRCRVFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTY 94

Query: 62  LLTVKQQ 69
           LLT+KQ+
Sbjct: 95  LLTIKQK 101

[Close]

BLAST of Lcy05g011780 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-13
Identity = 37/67 (55.22%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 2   DFHGVSDAIRCRVFAFTMIGSAKQWFERLERRSISSFKELAQAFLSQFMGAREQRKPHIN 61
           D +G+++AIRCRVF+FT+ GS + WF++L+R+SISSFKELA+AF++QF G   + +P   
Sbjct: 35  DIYGITEAIRCRVFSFTLTGSTRIWFQQLKRKSISSFKELARAFVTQFAGGWNRSRPVAY 94

Query: 62  LLTVKQQ 69
           LLT+KQ+
Sbjct: 95  LLTIKQK 101

[Close]

BLAST of Lcy05g011780 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-13
Identity = 38/68 (55.88%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MDFHGVSDAIRCRVFAFTMIGSAKQWFERLERRSISSFKELAQAFLSQFMGAREQRKPHI 60
           MD +GVS+A++CRVF+ T+ GSA+ WF +L+R SISSFK LA+AF++QF+G R + +P  
Sbjct: 38  MDIYGVSEAVKCRVFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVA 97

Query: 61  NLLTVKQQ 69
            LLT+KQ+
Sbjct: 98  YLLTIKQR 105

[Close]

BLAST of Lcy05g011780 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 9.9e-13
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 0


Query: 1   MDFHGVSDAIRCRVFAFTMIGSAKQWFERLERRSISSFKELAQAFLSQFMGAREQRKPHI 60
           MD +GVS+A+RCRVF+ T+ GSA+ WF +L+R SISSFK LA+AF++QF+G R + +P  
Sbjct: 218 MDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVA 277

Query: 61  NLLTVKQQ 69
            LLT+KQ+
Sbjct: 278 YLLTIKQR 285

The following BLAST results are available for this feature:

BLAST of Lcy05g011780 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g011780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZ49	4.3e-14	58.21	uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1E1E7	4.3e-14	60.00	uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1D3B7	2.1e-13	55.22	uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1D7D2	2.1e-13	55.88	uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DWY0	4.8e-13	57.35	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Lcy05g011780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159109.1	8.9e-14	60.00	uncharacterized protein LOC111025548 [Momordica charantia]	[more]
XP_022158344.1	8.9e-14	58.21	uncharacterized protein LOC111024851 [Momordica charantia]	[more]
XP_022147761.1	4.4e-13	55.22	uncharacterized protein LOC111016619 [Momordica charantia]	[more]
XP_022150035.1	4.4e-13	55.88	uncharacterized protein LOC111018307 [Momordica charantia]	[more]
XP_022158830.1	9.9e-13	57.35	uncharacterized protein LOC111025293 [Momordica charantia]	[more]

BLAST of Lcy05g011780 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 14..67 e-value: 3.6E-8 score: 33.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g011780.1	Lcy05g011780.1	mRNA