Lcy05g011580 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g011580
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	U2 snRNP auxiliary factor large subunit
Location	Chr05: 13205918 .. 13207939 (+)
RNA-Seq Expression	Lcy05g011580
Synteny	Lcy05g011580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAACCCCCCCTGTTTTTTCTTTCTTCTTCATTTCACTTTCACCAATTCTCTCAAGAAAAATTTTCTCCAGAAACGAATTCCAAATTCCGGAGAGAAATTTGCAGAAGATCATCAACAAGTTCAACGATGCTTCAGCCGGAAGTTGAATCCACCAAAGTCCTTTGTCTCGCACAAGTTGTTTCTCCCGAAGACCTCATCGACGACGCGGATTACGAAGATATTCTTGAAGACATGTGCGCGGAAGCCGCAAAATTCGGTAAGAACTATGCATCGATCGGCGATTATCGATCGATTCTTCGCCTATCATCTTTAGATTCGAAATTTTAATTACTTAGCGGTTTCTTGTTTGTTTCTCTCTGTGCGATTTCTCTGTTTTATAGTCTTTTCTTGTCCTCGAAGAATCAGACGGAAGTCTCCATCGCCTTCGATCTTTGTACTTCCGATTCGTGTTTCTTGTTTGTTCGATTTTGTGAGTTTGTGGTTCTGAAATGGTGATTTGTTGTCTTTGCAGGTGCGTTAGTGAACATTGTGATCCCTCGTCCGAGACCTAATGAAGAAATTCCTGGAGTTGGAAAGGTAGGATTTACTTAATGCATCTTTCAACCATGCTTTTCGTTTTCTTCCCGTTTGAAAGTAATTTTTGTCCAGACAGTGTCTTGGTCCTGCAAACAGGGATTAGTAATAGTAATAGAACTAATCAGAATGAGAGAAATGGTGAAATTTTGAAAATTAAGATCTTACCTGATAAAGATACTGGAATTAATATAAAGTTTGAATTACAAATAGTTGTAGTTTGAATTTTGATGAATGTCTTTTCCTTAAAACTTTTTAACCCTTAAAATCTTTAATAAGCATTTGATTTTGAATCTTTGATTTAAATAAATGTTTTTTTTTTGTTTATTTAATTATTTAATTATTGATATGATATGTTGATTGAACTAATGAGTAGTCTATCAAATAAGTGAAAATTAGGTGATAGAATAATTTTGAATTGCTAACATTGTTATTTTTTATTCAATAACTAAAAAGGAATAAAGTTCAAAGTTGAAAGAACCAAACCAAGTGCATATTCTTTTAAAATTGAATTTTATTTAGAAATGAAACATAAAGTAAACTTGAAAGAATTAAGGAAGATTCTTTAAGTGAAAGAAAATAGTTGCAAGTAAAGCAATCTTCTTAGGGTGTGATTGTTAGAACATCGAGTTACTTCATATTTCTACAATTATATGATGTTGTTCACCTTAAACTTAAATCAATATAGATTTATTTTTCGATTTCACTAAAAAATTCTAGTACTATTGATTGAGATGTTCTTACTCTGAATGAAGTTTCCTTTATTTTTGGCCATGAACATTGGTCCCCTCTATCCAAATGGTCTTCTCTTGGAAGACAATATCCAATCCAGGTAGCTGCATATGTAAGTGGTAGCAGCCACCAACATGAATAATGAACAATGAATCACACAGAAAAGATTTCAATATCAAGTTACTTGAGCAAAATAAGGACATGACTGTTTGAACATTTCTATATAGCACAGGTGTTTTTGGAGTATGCTGATGTAGAGGGTGCAGTTGCAGCTCGTGCTGGTTTGAATGGGAGACAATTTGGAGGAAAACAAGTGTTGCCTCAATTCTATTCGGAGAACATGTTTGCACAAGGAGAGTATGGTGCCTAAACCCCACTCTTACAACTCACACAACATACGTATTGGACTAATCTGTCACAAAGATAAATGCTTATGCTTACCTTTATTCTTGAAGCTAAGATTGAGTGAGAATTTATAATCCTTTTTTTTTCTATAGTGATGTGAAAATTACATAAGTCTAATAGAAACCACTCTTTTGGATTGCGTGTTCGTGTTTGACACATGTTAGATATTTGAACACTTTGAAACTTGTTACATATGTGTGGACACTTGTTAGCACAATAAACATGTGTTAGTGTTAAATTCTAGTTGTACAAAGTGAATTGGGATCTAATGACGTACATTTTGTTAGTATGTATTTGAGCACTTTTTTA

mRNA sequence

CTAAAACCCCCCCTGTTTTTTCTTTCTTCTTCATTTCACTTTCACCAATTCTCTCAAGAAAAATTTTCTCCAGAAACGAATTCCAAATTCCGGAGAGAAATTTGCAGAAGATCATCAACAAGTTCAACGATGCTTCAGCCGGAAGTTGAATCCACCAAAGTCCTTTGTCTCGCACAAGTTGTTTCTCCCGAAGACCTCATCGACGACGCGGATTACGAAGATATTCTTGAAGACATGTGCGCGGAAGCCGCAAAATTCGGTGCGTTAGTGAACATTGTGATCCCTCGTCCGAGACCTAATGAAGAAATTCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCTGATGTAGAGGGTGCAGTTGCAGCTCGTGCTGGTTTGAATGGGAGACAATTTGGAGGAAAACAAGTGTTGCCTCAATTCTATTCGGAGAACATGTTTGCACAAGGAGAGTATGGTGCCTAAACCCCACTCTTACAACTCACACAACATACGTATTGGACTAATCTGTCACAAAGATAAATGCTTATGCTTACCTTTATTCTTGAAGCTAAGATTGAGTGAGAATTTATAATCCTTTTTTTTTCTATAGTGATGTGAAAATTACATAAGTCTAATAGAAACCACTCTTTTGGATTGCGTGTTCGTGTTTGACACATGTTAGATATTTGAACACTTTGAAACTTGTTACATATGTGTGGACACTTGTTAGCACAATAAACATGTGTTAGTGTTAAATTCTAGTTGTACAAAGTGAATTGGGATCTAATGACGTACATTTTGTTAGTATGTATTTGAGCACTTTTTTA

Coding sequence (CDS)

ATGCTTCAGCCGGAAGTTGAATCCACCAAAGTCCTTTGTCTCGCACAAGTTGTTTCTCCCGAAGACCTCATCGACGACGCGGATTACGAAGATATTCTTGAAGACATGTGCGCGGAAGCCGCAAAATTCGGTGCGTTAGTGAACATTGTGATCCCTCGTCCGAGACCTAATGAAGAAATTCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCTGATGTAGAGGGTGCAGTTGCAGCTCGTGCTGGTTTGAATGGGAGACAATTTGGAGGAAAACAAGTGTTGCCTCAATTCTATTCGGAGAACATGTTTGCACAAGGAGAGTATGGTGCCTAA

Protein sequence

MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA

Homology

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BLAST of Lcy05g011580 vs. ExPASy Swiss-Prot
Match: Q9ZR39 (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia OX=4092 GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-33
Identity = 71/111 (63.96%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EE 60
           MLQP   +TKVLCL +VV+ ++L DD DY+DILEDM  E  KFGALVN+VIPRP PN   
Sbjct: 445 MLQPGALATKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGVP 504

Query: 61  IPGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
            PG+GKVFLEYADV+G+  AR GLNGR+FGG QV+  FY EN F++G+Y A
Sbjct: 505 TPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGDYEA 555

[Close]

BLAST of Lcy05g011580 vs. ExPASy Swiss-Prot
Match: Q9ZR40 (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-31
Identity = 68/109 (62.39%), Postives = 82/109 (75.23%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EE 60
           MLQP   +TKVL L +V+S ++L DD DY+DILEDM  E  KFG+LVN+VIPRP PN E 
Sbjct: 463 MLQPATLATKVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGEP 522

Query: 61  IPGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEY 109
            PGVGKVFLEYADV+ +  AR  LNGR+FGG QV+  FY EN F +G+Y
Sbjct: 523 TPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDY 571

[Close]

BLAST of Lcy05g011580 vs. ExPASy Swiss-Prot
Match: Q8L716 (Splicing factor U2af large subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF65B PE=1 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-30
Identity = 63/109 (57.80%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEE- 60
           M QP    TK++CL QVV+ +DL DD +Y +I+EDM  E  KFG LVN+VIPRP P+ + 
Sbjct: 479 MFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDP 538

Query: 61  IPGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEY 109
            PGVGKVFLEYADV+G+  AR+G+NGR+FGG QV+  +Y E+ +AQG+Y
Sbjct: 539 TPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 587

[Close]

BLAST of Lcy05g011580 vs. ExPASy Swiss-Prot
Match: O23212 (Splicing factor U2af large subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF65A PE=1 SV=2)

HSP 1 Score: 132.9 bits (333), Expect = 2.2e-30
Identity = 63/111 (56.76%), Postives = 83/111 (74.77%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EE 60
           MLQP   +T V+CL QVV+ ++L DD +Y DI+EDM  E  KFGAL N+VIPRP PN E 
Sbjct: 463 MLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEP 522

Query: 61  IPGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           + G+GKVFL+YAD +G+  AR G+NGR+FGG +V+  +Y E+ F QG+YGA
Sbjct: 523 VAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDYGA 573

[Close]

BLAST of Lcy05g011580 vs. ExPASy Swiss-Prot
Match: Q2QKB4 (Splicing factor U2af large subunit B OS=Triticum aestivum OX=4565 GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-27
Identity = 59/103 (57.28%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 9   TKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVF 68
           TKV+CL QVV+ ++L DD +YEDI+EDM  EA K+G LV +VIPRP P+ E + GVGKVF
Sbjct: 439 TKVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKVF 498

Query: 69  LEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           LEYADV+G+  A+  ++GR+FGG  V+  FY EN FA  +Y A
Sbjct: 499 LEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFADEDYDA 541

[Close]

BLAST of Lcy05g011580 vs. ExPASy TrEMBL
Match: A0A6J1JYJ3 (U2 snRNP auxiliary factor large subunit OS=Cucurbita maxima OX=3661 GN=LOC111488602 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEI 60
           MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  
Sbjct: 473 MLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPNEAA 532

Query: 61  PGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           PGVGKVFLEYAD+E A  AR+GLNGR+FGG QV+  FY EN FAQGEY A
Sbjct: 533 PGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYDA 582

[Close]

BLAST of Lcy05g011580 vs. ExPASy TrEMBL
Match: A0A6J1JSX0 (U2 snRNP auxiliary factor large subunit OS=Cucurbita maxima OX=3661 GN=LOC111488602 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEI 60
           MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  
Sbjct: 480 MLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPNEAA 539

Query: 61  PGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           PGVGKVFLEYAD+E A  AR+GLNGR+FGG QV+  FY EN FAQGEY A
Sbjct: 540 PGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYDA 589

[Close]

BLAST of Lcy05g011580 vs. ExPASy TrEMBL
Match: A0A6J1JWY0 (U2 snRNP auxiliary factor large subunit OS=Cucurbita maxima OX=3661 GN=LOC111488602 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEI 60
           MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  
Sbjct: 285 MLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPNEAA 344

Query: 61  PGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           PGVGKVFLEYAD+E A  AR+GLNGR+FGG QV+  FY EN FAQGEY A
Sbjct: 345 PGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYDA 394

[Close]

BLAST of Lcy05g011580 vs. ExPASy TrEMBL
Match: A0A6J1JWX9 (U2 snRNP auxiliary factor large subunit OS=Cucurbita maxima OX=3661 GN=LOC111488602 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEI 60
           MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  
Sbjct: 472 MLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPNEAA 531

Query: 61  PGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           PGVGKVFLEYAD+E A  AR+GLNGR+FGG QV+  FY EN FAQGEY A
Sbjct: 532 PGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYDA 581

[Close]

BLAST of Lcy05g011580 vs. ExPASy TrEMBL
Match: A0A6J1JYK1 (U2 snRNP auxiliary factor large subunit OS=Cucurbita maxima OX=3661 GN=LOC111488602 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEI 60
           MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  
Sbjct: 258 MLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPNEAA 317

Query: 61  PGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           PGVGKVFLEYAD+E A  AR+GLNGR+FGG QV+  FY EN FAQGEY A
Sbjct: 318 PGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYDA 367

[Close]

BLAST of Lcy05g011580 vs. NCBI nr
Match: XP_022929829.1 (splicing factor U2af large subunit B-like isoform X9 [Cucurbita moschata])

HSP 1 Score: 167.9 bits (424), Expect = 4.8e-38
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEI 60
           MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  
Sbjct: 284 MLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPNEAA 343

Query: 61  PGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           PGVGKVFLEYAD+E A  AR+GLNGR+FGG QV+  FY EN FAQGEY A
Sbjct: 344 PGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYDA 393

[Close]

BLAST of Lcy05g011580 vs. NCBI nr
Match: XP_022992203.1 (splicing factor U2af large subunit A-like isoform X4 [Cucurbita maxima])

HSP 1 Score: 167.9 bits (424), Expect = 4.8e-38
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEI 60
           MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  
Sbjct: 473 MLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPNEAA 532

Query: 61  PGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           PGVGKVFLEYAD+E A  AR+GLNGR+FGG QV+  FY EN FAQGEY A
Sbjct: 533 PGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYDA 582

[Close]

BLAST of Lcy05g011580 vs. NCBI nr
Match: XP_022929822.1 (splicing factor U2af large subunit A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 167.9 bits (424), Expect = 4.8e-38
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEI 60
           MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  
Sbjct: 486 MLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPNEAA 545

Query: 61  PGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           PGVGKVFLEYAD+E A  AR+GLNGR+FGG QV+  FY EN FAQGEY A
Sbjct: 546 PGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYDA 595

[Close]

BLAST of Lcy05g011580 vs. NCBI nr
Match: XP_022992211.1 (splicing factor U2af large subunit B-like isoform X11 [Cucurbita maxima])

HSP 1 Score: 167.9 bits (424), Expect = 4.8e-38
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEI 60
           MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  
Sbjct: 278 MLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPNEAA 337

Query: 61  PGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           PGVGKVFLEYAD+E A  AR+GLNGR+FGG QV+  FY EN FAQGEY A
Sbjct: 338 PGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYDA 387

[Close]

BLAST of Lcy05g011580 vs. NCBI nr
Match: XP_022929826.1 (splicing factor U2af large subunit B-like isoform X6 [Cucurbita moschata])

HSP 1 Score: 167.9 bits (424), Expect = 4.8e-38
Identity = 81/110 (73.64%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEI 60
           MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  
Sbjct: 299 MLQPGAVSTKVLCLTQVVTPEELINDEDYEDIMEDMRGEGGKFGALVNVVIPRPRPNEAA 358

Query: 61  PGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           PGVGKVFLEYAD+E A  AR+GLNGR+FGG QV+  FY EN FAQGEY A
Sbjct: 359 PGVGKVFLEYADIESATKARSGLNGRKFGGNQVIAVFYPENKFAQGEYDA 408

[Close]

BLAST of Lcy05g011580 vs. TAIR 10
Match: AT1G60830.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-33
Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEE- 60
           MLQP    TK++CL QVV+ +DL DDA+Y DI+EDM  E  KFG LVN+VIPRP P+ + 
Sbjct: 1   MLQPGGTPTKIVCLTQVVTADDLRDDAEYADIMEDMSQEGGKFGNLVNVVIPRPNPDHDP 60

Query: 61  IPGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEY 109
            PGVGKVFLEYADV+G+  AR+G+NGR+FGG QV+  +Y E+ +AQG+Y
Sbjct: 61  TPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 109

[Close]

BLAST of Lcy05g011580 vs. TAIR 10
Match: AT1G60900.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-31
Identity = 63/109 (57.80%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEE- 60
           M QP    TK++CL QVV+ +DL DD +Y +I+EDM  E  KFG LVN+VIPRP P+ + 
Sbjct: 479 MFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDP 538

Query: 61  IPGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEY 109
            PGVGKVFLEYADV+G+  AR+G+NGR+FGG QV+  +Y E+ +AQG+Y
Sbjct: 539 TPGVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGDY 587

[Close]

BLAST of Lcy05g011580 vs. TAIR 10
Match: AT4G36690.1 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-31
Identity = 63/111 (56.76%), Postives = 83/111 (74.77%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EE 60
           MLQP   +T V+CL QVV+ ++L DD +Y DI+EDM  E  KFGAL N+VIPRP PN E 
Sbjct: 463 MLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEP 522

Query: 61  IPGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           + G+GKVFL+YAD +G+  AR G+NGR+FGG +V+  +Y E+ F QG+YGA
Sbjct: 523 VAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDYGA 573

[Close]

BLAST of Lcy05g011580 vs. TAIR 10
Match: AT4G36690.4 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-31
Identity = 63/111 (56.76%), Postives = 83/111 (74.77%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EE 60
           MLQP   +T V+CL QVV+ ++L DD +Y DI+EDM  E  KFGAL N+VIPRP PN E 
Sbjct: 441 MLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEP 500

Query: 61  IPGVGKVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQGEYGA 111
           + G+GKVFL+YAD +G+  AR G+NGR+FGG +V+  +Y E+ F QG+YGA
Sbjct: 501 VAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDYGA 551

[Close]

BLAST of Lcy05g011580 vs. TAIR 10
Match: AT4G36690.2 (U2 snRNP auxilliary factor, large subunit, splicing factor )

HSP 1 Score: 50.8 bits (120), Expect = 7.9e-07
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1   MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFG 45
           MLQP   +T V+CL QVV+ ++L DD +Y DI+EDM  E  KFG
Sbjct: 463 MLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFG 506

The following BLAST results are available for this feature:

BLAST of Lcy05g011580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZR39	2.2e-33	63.96	Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia OX=4092 GN=U2A...	[more]
Q9ZR40	1.2e-31	62.39	Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2A...	[more]
Q8L716	1.7e-30	57.80	Splicing factor U2af large subunit B OS=Arabidopsis thaliana OX=3702 GN=U2AF65B ...	[more]
O23212	2.2e-30	56.76	Splicing factor U2af large subunit A OS=Arabidopsis thaliana OX=3702 GN=U2AF65A ...	[more]
Q2QKB4	2.3e-27	57.28	Splicing factor U2af large subunit B OS=Triticum aestivum OX=4565 GN=U2AF65B PE=...	[more]

BLAST of Lcy05g011580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JYJ3	2.3e-38	73.64	U2 snRNP auxiliary factor large subunit OS=Cucurbita maxima OX=3661 GN=LOC111488...	[more]
A0A6J1JSX0	2.3e-38	73.64	U2 snRNP auxiliary factor large subunit OS=Cucurbita maxima OX=3661 GN=LOC111488...	[more]
A0A6J1JWY0	2.3e-38	73.64	U2 snRNP auxiliary factor large subunit OS=Cucurbita maxima OX=3661 GN=LOC111488...	[more]
A0A6J1JWX9	2.3e-38	73.64	U2 snRNP auxiliary factor large subunit OS=Cucurbita maxima OX=3661 GN=LOC111488...	[more]
A0A6J1JYK1	2.3e-38	73.64	U2 snRNP auxiliary factor large subunit OS=Cucurbita maxima OX=3661 GN=LOC111488...	[more]

BLAST of Lcy05g011580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929829.1	4.8e-38	73.64	splicing factor U2af large subunit B-like isoform X9 [Cucurbita moschata]	[more]
XP_022992203.1	4.8e-38	73.64	splicing factor U2af large subunit A-like isoform X4 [Cucurbita maxima]	[more]
XP_022929822.1	4.8e-38	73.64	splicing factor U2af large subunit A-like isoform X2 [Cucurbita moschata]	[more]
XP_022992211.1	4.8e-38	73.64	splicing factor U2af large subunit B-like isoform X11 [Cucurbita maxima]	[more]
XP_022929826.1	4.8e-38	73.64	splicing factor U2af large subunit B-like isoform X6 [Cucurbita moschata]	[more]

BLAST of Lcy05g011580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60830.1	2.2e-33	60.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60900.1	1.2e-31	57.80	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.1	1.6e-31	56.76	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.4	1.6e-31	56.76	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]
AT4G36690.2	7.9e-07	54.55	U2 snRNP auxilliary factor, large subunit, splicing factor	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 41..93 e-value: 3.4E-5 score: 23.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 5..108 e-value: 1.5E-29 score: 104.0
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 1..108
None	No IPR available	PANTHER	PTHR23139:SF117	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED	coord: 1..108
None	No IPR available	CDD	cd12232	RRM3_U2AF65	coord: 9..94 e-value: 2.56629E-36 score: 116.887
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g011580.1	Lcy05g011580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding