Lcy05g010960 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g010960
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionNatterin-3 like
LocationChr05: 12275410 .. 12276210 (-)
RNA-Seq ExpressionLcy05g010960
SyntenyLcy05g010960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTCGAAGAGGTTGCAATTTCTAGGACCATTGATAGCATAAAGTATCGGCTTGACGAAGCAAGAATTTATGGGTTGAAAGTGATATCGATGGCAAAAGGAGAAGCCGTCAACAAAACCAACGAAACAGACACAGTGACGTTTAAATTCTCATACGAGGATAAAAAGAAGAGTAATTGGACTTCCTCGATCTCGGGCAAGGTTGGTCTCAAAGTAACATTTGAAGCTGACCTTCCTATCATTAAAAACAGCAAAATTGAGGTTTCAGGTGAATATGGACATAAACGTGAATGGGGTGAAACTACTAAAAAGAAAGAAGTGATTGAAAAGAGTTACACTGTAAGTGTACCTCCAAACTCAACGGTGAAGATCAACATTACGGTAAAACAAGGAAAGTGCCAAGTTCCTTTCTCTTATCGTCGAACGGAGATTCTCACAAGTGGAAAAAGAGTTGAGCATTATTTAAATGATGGGCTTTTCACTGGTGTTAGCTCCTATGACACTGAGTTCAGTTCAGAATAAGTATCAATGGAGGACTCGTGATTGAAAGGGGGTTTCAAAGAGTGGAAATTTCACTTCTCTTTTTATGGTAATTTGCTAGCTGTGTTGTTATTGTAGAGAATAATGGTTGTTGGACCAGTTCCGGTCGTATGTTGTTTTGTTTGTTTTTTAGTTCAACCATGTGTGGAGGTAAGGATTTCGGACCTGAAATGTTGTATGTTTGTTTGGTATTTTATATCTTTTCAATTCGAGTCTAATCGTTCAGTGAAATGCAATTTGGTTGCAAAGACATTTGGA

mRNA sequence

ATGGAAGTCGAAGAGGTTGCAATTTCTAGGACCATTGATAGCATAAAGTATCGGCTTGACGAAGCAAGAATTTATGGGTTGAAAGTGATATCGATGGCAAAAGGAGAAGCCGTCAACAAAACCAACGAAACAGACACAGTGACGTTTAAATTCTCATACGAGGATAAAAAGAAGAGTAATTGGACTTCCTCGATCTCGGGCAAGGTTGGTCTCAAAGTAACATTTGAAGCTGACCTTCCTATCATTAAAAACAGCAAAATTGAGGTTTCAGGTGAATATGGACATAAACGTGAATGGGGTGAAACTACTAAAAAGAAAGAAGTGATTGAAAAGAGTTACACTGTAAGTGTACCTCCAAACTCAACGGTGAAGATCAACATTACGGTAAAACAAGGAAAGTGCCAAGTTCCTTTCTCTTATCGTCGAACGGAGATTCTCACAAGTGGAAAAAGAGTTGAGCATTATTTAAATGATGGGCTTTTCACTGGTGTTAGCTCCTATGACACTGAGTTCAGTTCAGAATAAGTATCAATGGAGGACTCGTGATTGAAAGGGGGTTTCAAAGAGTGGAAATTTCACTTCTCTTTTTATGGTAATTTGCTAGCTGTGTTGTTATTGTAGAGAATAATGGTTGTTGGACCAGTTCCGGTCGTATGTTGTTTTGTTTGTTTTTTAGTTCAACCATGTGTGGAGGTAAGGATTTCGGACCTGAAATGTTGTATGTTTGTTTGGTATTTTATATCTTTTCAATTCGAGTCTAATCGTTCAGTGAAATGCAATTTGGTTGCAAAGACATTTGGA

Coding sequence (CDS)

ATGGAAGTCGAAGAGGTTGCAATTTCTAGGACCATTGATAGCATAAAGTATCGGCTTGACGAAGCAAGAATTTATGGGTTGAAAGTGATATCGATGGCAAAAGGAGAAGCCGTCAACAAAACCAACGAAACAGACACAGTGACGTTTAAATTCTCATACGAGGATAAAAAGAAGAGTAATTGGACTTCCTCGATCTCGGGCAAGGTTGGTCTCAAAGTAACATTTGAAGCTGACCTTCCTATCATTAAAAACAGCAAAATTGAGGTTTCAGGTGAATATGGACATAAACGTGAATGGGGTGAAACTACTAAAAAGAAAGAAGTGATTGAAAAGAGTTACACTGTAAGTGTACCTCCAAACTCAACGGTGAAGATCAACATTACGGTAAAACAAGGAAAGTGCCAAGTTCCTTTCTCTTATCGTCGAACGGAGATTCTCACAAGTGGAAAAAGAGTTGAGCATTATTTAAATGATGGGCTTTTCACTGGTGTTAGCTCCTATGACACTGAGTTCAGTTCAGAATAA

Protein sequence

MEVEEVAISRTIDSIKYRLDEARIYGLKVISMAKGEAVNKTNETDTVTFKFSYEDKKKSNWTSSISGKVGLKVTFEADLPIIKNSKIEVSGEYGHKREWGETTKKKEVIEKSYTVSVPPNSTVKINITVKQGKCQVPFSYRRTEILTSGKRVEHYLNDGLFTGVSSYDTEFSSE
Homology
BLAST of Lcy05g010960 vs. ExPASy TrEMBL
Match: A0A6J1DMW2 (uncharacterized protein LOC111022561 OS=Momordica charantia OX=3673 GN=LOC111022561 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 7.4e-55
Identity = 107/174 (61.49%), Postives = 138/174 (79.31%), Query Frame = 0

Query: 1   MEVEEVAISRTIDSIKYRLDEARIYGLKVISMAKGEAVNKTNETDTVTFKFSYEDKKKSN 60
           M VEE+ +SRTID+++YRL++ARIYG K++SMAKG+A+N T ETD VTFKFSYE+K K+N
Sbjct: 321 MVVEEIVVSRTIDNVEYRLNDARIYGQKIVSMAKGDAINTTKETDIVTFKFSYENKTKTN 380

Query: 61  WTSSISGKVGLKVTFEADLPIIKNSKIEVSGEYGHKREWGETTKKKEVIEKSYTVSVPPN 120
           WTS++S  +G+   F+A +PI+   KIEVS E G   EWGET K K  IE +Y V+VPP 
Sbjct: 381 WTSTLSTNIGVTTKFQAGVPIVGKGKIEVSAEIGSGYEWGETHKHKNTIELNYPVTVPPI 440

Query: 121 STVKINITVKQGKCQVPFSYRRTEILTSGKRVEHYLNDGLFTGVSSYDTEFSSE 175
           S VKIN  VKQG CQVPFSYRRT++L +G+RV H+L+DGLF+GV+SYD EF S+
Sbjct: 441 SRVKINAVVKQGMCQVPFSYRRTDLLKNGRRVVHHLHDGLFSGVNSYDYEFMSK 494

BLAST of Lcy05g010960 vs. ExPASy TrEMBL
Match: A0A6J1DUY9 (uncharacterized protein LOC111024282 OS=Momordica charantia OX=3673 GN=LOC111024282 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.4e-53
Identity = 107/176 (60.80%), Postives = 138/176 (78.41%), Query Frame = 0

Query: 1   MEVEEVAISRTIDSIKYRLDEARIYGLKVISMAKGEAVNKTNETDTVTFKFSYEDKKKSN 60
           ++  E  IS+TID+++YRL++ARIYG KV+SMAKG+AVNKT ETDTVTFKF+YE+KKK N
Sbjct: 333 LKAAEAVISKTIDNVEYRLNDARIYGQKVVSMAKGDAVNKTKETDTVTFKFTYEEKKKKN 392

Query: 61  WTSSISGKVGLKVT--FEADLPIIKNSKIEVSGEYGHKREWGETTKKKEVIEKSYTVSVP 120
           W+SS+S K+G+ V+  F+  +P +   KIEV  E G + EWG T K K V E +Y V+VP
Sbjct: 393 WSSSVSSKIGVSVSSKFQVGIPHVGEGKIEVLAEMGAEYEWGVTHKDKNVREFTYPVTVP 452

Query: 121 PNSTVKINITVKQGKCQVPFSYRRTEILTSGKRVEHYLNDGLFTGVSSYDTEFSSE 175
           P S VKIN  +KQG CQVPFSYRRT++L +G++V H+LNDGLFTGV+SYD EF SE
Sbjct: 453 PMSRVKINAVIKQGICQVPFSYRRTDVLRTGRQVVHHLNDGLFTGVNSYDFEFKSE 508

BLAST of Lcy05g010960 vs. ExPASy TrEMBL
Match: A0A6J1DTU6 (uncharacterized protein LOC111024284 OS=Momordica charantia OX=3673 GN=LOC111024284 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.7e-46
Identity = 95/174 (54.60%), Postives = 130/174 (74.71%), Query Frame = 0

Query: 1   MEVEEVAISRTIDSIKYRLDEARIYGLKVISMAKGEAVNKTNETDTVTFKFSYEDKKKSN 60
           MEVEE  +SRTID ++Y+L++A IY  KV+SMAKG+A+NKT E DTVTFKF YE K K+ 
Sbjct: 318 MEVEEPVVSRTIDMLRYKLNDATIYDQKVLSMAKGDAINKTKEIDTVTFKFYYEKKMKTT 377

Query: 61  WTSSISGKVGLKVTFEAD-LPIIKNSKIEVSGEYGHKREWGETTKKKEVIEKSYTVSVPP 120
           W++++S K+GL   F+ + +PII +  IE+S E G +  WG+T K K +IE +Y V+VPP
Sbjct: 378 WSATLSSKIGLTTKFKLNGIPIIGSGSIEISTELGTEYSWGKTDKHKSIIELTYPVTVPP 437

Query: 121 NSTVKINITVKQGKCQVPFSYRRTEILTSGKRVEHYLNDGLFTGVSSYDTEFSS 174
            S V+I+  VKQG C+VPF+YRR ++  +G+ V  Y +DGLFTGV+SYD EFSS
Sbjct: 438 MSRVEISAVVKQGMCKVPFTYRRNDVFYNGRTVTSYYSDGLFTGVNSYDYEFSS 491

BLAST of Lcy05g010960 vs. ExPASy TrEMBL
Match: A0A6J1DYR0 (uncharacterized protein LOC111024281 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024281 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.1e-41
Identity = 89/148 (60.14%), Postives = 113/148 (76.35%), Query Frame = 0

Query: 1   MEVEEVAISRTIDSIKYRLDEARIYGLKVISMAKGEAVNKTNETDTVTFKFSYEDKKKSN 60
           MEV EV ISRTID+++YR+++A+IYG KV+SM KG AVNKT ETDTVTF+F YE+K K N
Sbjct: 289 MEVVEVVISRTIDNVEYRINDAQIYGQKVVSMGKGTAVNKTKETDTVTFQFKYEEKNKKN 348

Query: 61  WTSSISGKVGLKVT--FEADLPIIKNSKIEVSGEYGHKREWGETTKKKEVIEKSYTVSVP 120
           W+SS+S K+G+ VT  F+  +P++   KIEVS E   + EWGET K K V E +Y V VP
Sbjct: 349 WSSSVSSKIGVSVTTNFQVGVPMVAKGKIEVSAEMETEYEWGETHKDKNVKEFTYPVIVP 408

Query: 121 PNSTVKINITVKQGKCQVPFSYRRTEIL 147
           P S VKI+  +KQG CQVPFSYRRT++L
Sbjct: 409 PMSKVKIHALIKQGMCQVPFSYRRTDVL 436

BLAST of Lcy05g010960 vs. ExPASy TrEMBL
Match: A0A6J1DTL3 (uncharacterized protein LOC111024281 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024281 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.1e-41
Identity = 89/148 (60.14%), Postives = 113/148 (76.35%), Query Frame = 0

Query: 1   MEVEEVAISRTIDSIKYRLDEARIYGLKVISMAKGEAVNKTNETDTVTFKFSYEDKKKSN 60
           MEV EV ISRTID+++YR+++A+IYG KV+SM KG AVNKT ETDTVTF+F YE+K K N
Sbjct: 299 MEVVEVVISRTIDNVEYRINDAQIYGQKVVSMGKGTAVNKTKETDTVTFQFKYEEKNKKN 358

Query: 61  WTSSISGKVGLKVT--FEADLPIIKNSKIEVSGEYGHKREWGETTKKKEVIEKSYTVSVP 120
           W+SS+S K+G+ VT  F+  +P++   KIEVS E   + EWGET K K V E +Y V VP
Sbjct: 359 WSSSVSSKIGVSVTTNFQVGVPMVAKGKIEVSAEMETEYEWGETHKDKNVKEFTYPVIVP 418

Query: 121 PNSTVKINITVKQGKCQVPFSYRRTEIL 147
           P S VKI+  +KQG CQVPFSYRRT++L
Sbjct: 419 PMSKVKIHALIKQGMCQVPFSYRRTDVL 446

BLAST of Lcy05g010960 vs. NCBI nr
Match: XP_022155413.1 (uncharacterized protein LOC111022561 [Momordica charantia])

HSP 1 Score: 223.4 bits (568), Expect = 1.5e-54
Identity = 107/174 (61.49%), Postives = 138/174 (79.31%), Query Frame = 0

Query: 1   MEVEEVAISRTIDSIKYRLDEARIYGLKVISMAKGEAVNKTNETDTVTFKFSYEDKKKSN 60
           M VEE+ +SRTID+++YRL++ARIYG K++SMAKG+A+N T ETD VTFKFSYE+K K+N
Sbjct: 321 MVVEEIVVSRTIDNVEYRLNDARIYGQKIVSMAKGDAINTTKETDIVTFKFSYENKTKTN 380

Query: 61  WTSSISGKVGLKVTFEADLPIIKNSKIEVSGEYGHKREWGETTKKKEVIEKSYTVSVPPN 120
           WTS++S  +G+   F+A +PI+   KIEVS E G   EWGET K K  IE +Y V+VPP 
Sbjct: 381 WTSTLSTNIGVTTKFQAGVPIVGKGKIEVSAEIGSGYEWGETHKHKNTIELNYPVTVPPI 440

Query: 121 STVKINITVKQGKCQVPFSYRRTEILTSGKRVEHYLNDGLFTGVSSYDTEFSSE 175
           S VKIN  VKQG CQVPFSYRRT++L +G+RV H+L+DGLF+GV+SYD EF S+
Sbjct: 441 SRVKINAVVKQGMCQVPFSYRRTDLLKNGRRVVHHLHDGLFSGVNSYDYEFMSK 494

BLAST of Lcy05g010960 vs. NCBI nr
Match: XP_022157622.1 (uncharacterized protein LOC111024282 [Momordica charantia])

HSP 1 Score: 218.4 bits (555), Expect = 4.9e-53
Identity = 107/176 (60.80%), Postives = 138/176 (78.41%), Query Frame = 0

Query: 1   MEVEEVAISRTIDSIKYRLDEARIYGLKVISMAKGEAVNKTNETDTVTFKFSYEDKKKSN 60
           ++  E  IS+TID+++YRL++ARIYG KV+SMAKG+AVNKT ETDTVTFKF+YE+KKK N
Sbjct: 333 LKAAEAVISKTIDNVEYRLNDARIYGQKVVSMAKGDAVNKTKETDTVTFKFTYEEKKKKN 392

Query: 61  WTSSISGKVGLKVT--FEADLPIIKNSKIEVSGEYGHKREWGETTKKKEVIEKSYTVSVP 120
           W+SS+S K+G+ V+  F+  +P +   KIEV  E G + EWG T K K V E +Y V+VP
Sbjct: 393 WSSSVSSKIGVSVSSKFQVGIPHVGEGKIEVLAEMGAEYEWGVTHKDKNVREFTYPVTVP 452

Query: 121 PNSTVKINITVKQGKCQVPFSYRRTEILTSGKRVEHYLNDGLFTGVSSYDTEFSSE 175
           P S VKIN  +KQG CQVPFSYRRT++L +G++V H+LNDGLFTGV+SYD EF SE
Sbjct: 453 PMSRVKINAVIKQGICQVPFSYRRTDVLRTGRQVVHHLNDGLFTGVNSYDFEFKSE 508

BLAST of Lcy05g010960 vs. NCBI nr
Match: XP_022157623.1 (uncharacterized protein LOC111024284 [Momordica charantia])

HSP 1 Score: 194.5 bits (493), Expect = 7.6e-46
Identity = 95/174 (54.60%), Postives = 130/174 (74.71%), Query Frame = 0

Query: 1   MEVEEVAISRTIDSIKYRLDEARIYGLKVISMAKGEAVNKTNETDTVTFKFSYEDKKKSN 60
           MEVEE  +SRTID ++Y+L++A IY  KV+SMAKG+A+NKT E DTVTFKF YE K K+ 
Sbjct: 318 MEVEEPVVSRTIDMLRYKLNDATIYDQKVLSMAKGDAINKTKEIDTVTFKFYYEKKMKTT 377

Query: 61  WTSSISGKVGLKVTFEAD-LPIIKNSKIEVSGEYGHKREWGETTKKKEVIEKSYTVSVPP 120
           W++++S K+GL   F+ + +PII +  IE+S E G +  WG+T K K +IE +Y V+VPP
Sbjct: 378 WSATLSSKIGLTTKFKLNGIPIIGSGSIEISTELGTEYSWGKTDKHKSIIELTYPVTVPP 437

Query: 121 NSTVKINITVKQGKCQVPFSYRRTEILTSGKRVEHYLNDGLFTGVSSYDTEFSS 174
            S V+I+  VKQG C+VPF+YRR ++  +G+ V  Y +DGLFTGV+SYD EFSS
Sbjct: 438 MSRVEISAVVKQGMCKVPFTYRRNDVFYNGRTVTSYYSDGLFTGVNSYDYEFSS 491

BLAST of Lcy05g010960 vs. NCBI nr
Match: XP_022157620.1 (uncharacterized protein LOC111024281 isoform X1 [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 4.3e-41
Identity = 89/148 (60.14%), Postives = 113/148 (76.35%), Query Frame = 0

Query: 1   MEVEEVAISRTIDSIKYRLDEARIYGLKVISMAKGEAVNKTNETDTVTFKFSYEDKKKSN 60
           MEV EV ISRTID+++YR+++A+IYG KV+SM KG AVNKT ETDTVTF+F YE+K K N
Sbjct: 299 MEVVEVVISRTIDNVEYRINDAQIYGQKVVSMGKGTAVNKTKETDTVTFQFKYEEKNKKN 358

Query: 61  WTSSISGKVGLKVT--FEADLPIIKNSKIEVSGEYGHKREWGETTKKKEVIEKSYTVSVP 120
           W+SS+S K+G+ VT  F+  +P++   KIEVS E   + EWGET K K V E +Y V VP
Sbjct: 359 WSSSVSSKIGVSVTTNFQVGVPMVAKGKIEVSAEMETEYEWGETHKDKNVKEFTYPVIVP 418

Query: 121 PNSTVKINITVKQGKCQVPFSYRRTEIL 147
           P S VKI+  +KQG CQVPFSYRRT++L
Sbjct: 419 PMSKVKIHALIKQGMCQVPFSYRRTDVL 446

BLAST of Lcy05g010960 vs. NCBI nr
Match: XP_022157621.1 (uncharacterized protein LOC111024281 isoform X2 [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 4.3e-41
Identity = 89/148 (60.14%), Postives = 113/148 (76.35%), Query Frame = 0

Query: 1   MEVEEVAISRTIDSIKYRLDEARIYGLKVISMAKGEAVNKTNETDTVTFKFSYEDKKKSN 60
           MEV EV ISRTID+++YR+++A+IYG KV+SM KG AVNKT ETDTVTF+F YE+K K N
Sbjct: 289 MEVVEVVISRTIDNVEYRINDAQIYGQKVVSMGKGTAVNKTKETDTVTFQFKYEEKNKKN 348

Query: 61  WTSSISGKVGLKVT--FEADLPIIKNSKIEVSGEYGHKREWGETTKKKEVIEKSYTVSVP 120
           W+SS+S K+G+ VT  F+  +P++   KIEVS E   + EWGET K K V E +Y V VP
Sbjct: 349 WSSSVSSKIGVSVTTNFQVGVPMVAKGKIEVSAEMETEYEWGETHKDKNVKEFTYPVIVP 408

Query: 121 PNSTVKINITVKQGKCQVPFSYRRTEIL 147
           P S VKI+  +KQG CQVPFSYRRT++L
Sbjct: 409 PMSKVKIHALIKQGMCQVPFSYRRTDVL 436

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DMW27.4e-5561.49uncharacterized protein LOC111022561 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DUY92.4e-5360.80uncharacterized protein LOC111024282 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DTU63.7e-4654.60uncharacterized protein LOC111024284 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DYR02.1e-4160.14uncharacterized protein LOC111024281 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DTL32.1e-4160.14uncharacterized protein LOC111024281 isoform X1 OS=Momordica charantia OX=3673 G... [more]
Match NameE-valueIdentityDescription
XP_022155413.11.5e-5461.49uncharacterized protein LOC111022561 [Momordica charantia][more]
XP_022157622.14.9e-5360.80uncharacterized protein LOC111024282 [Momordica charantia][more]
XP_022157623.17.6e-4654.60uncharacterized protein LOC111024284 [Momordica charantia][more]
XP_022157620.14.3e-4160.14uncharacterized protein LOC111024281 isoform X1 [Momordica charantia][more]
XP_022157621.14.3e-4160.14uncharacterized protein LOC111024281 isoform X2 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.170.15.10Proaerolysin, chain A, domain 3coord: 10..173
e-value: 2.9E-41
score: 142.8
NoneNo IPR availablePANTHERPTHR39244NATTERIN-4coord: 1..173
NoneNo IPR availableCDDcd20216PFM_HFR-2-likecoord: 24..174
e-value: 1.82805E-58
score: 177.78
NoneNo IPR availableSUPERFAMILY56973Aerolisin/ETX pore-forming domaincoord: 8..171
IPR005830AerolysinPFAMPF01117Aerolysincoord: 21..140
e-value: 1.4E-7
score: 31.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g010960.1Lcy05g010960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region