Lcy05g010690 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy05g010690
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr05: 11716972 .. 11717512 (+)
RNA-Seq Expression	Lcy05g010690
Synteny	Lcy05g010690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCGGTCCGGAGAGAATGGAGAAAACCCAGAAGCGAAAAGGCTTCATGAGGCGCCTATATCGAGCCGCAAGATCCGCCGGAAAAGCCAAAGCAAAGCAAAGTAACTCGCCGACGCCGGTGGATTTCACGACGGAACCGATCGGAGGTCGTTTCGCGGTGACGAGCGAGATGAAATCTGCGAGTTATCCGAACAAATCGGCGCCGGCGCCAGCGGCGGTGCAGAAGCAGACCTCGTCGGCGCACGGCGGATATCGCGATGGAAACGGCGAAATGCGGGGAGGTTACGGCGGCGGGGACGAGAATGTGGACGTGAAGGCGGCGATGTATATTTTGTGGGTAAGAGAACGTTTGAAGATGGAGAGGTCAATTGATCAAAAGGTTTGCTAAGAAATTTCAGAAATTATGGTTCATTATTGAATAGTGTGGTACTAAATTAAAATTAGGAAGTAAGAGAGTGATTATTGGAATATGAAAGTGTATTAAGTGTCAAAGAGTTATCATATTATATATATGTTTGTGGATTTTGGTTTCTTTGTTAAAA

mRNA sequence

ACCGGTCCGGAGAGAATGGAGAAAACCCAGAAGCGAAAAGGCTTCATGAGGCGCCTATATCGAGCCGCAAGATCCGCCGGAAAAGCCAAAGCAAAGCAAAGTAACTCGCCGACGCCGGTGGATTTCACGACGGAACCGATCGGAGGTCGTTTCGCGGTGACGAGCGAGATGAAATCTGCGAGTTATCCGAACAAATCGGCGCCGGCGCCAGCGGCGGTGCAGAAGCAGACCTCGTCGGCGCACGGCGGATATCGCGATGGAAACGGCGAAATGCGGGGAGGTTACGGCGGCGGGGACGAGAATGTGGACGTGAAGGCGGCGATGTATATTTTGTGGGTAAGAGAACGTTTGAAGATGGAGAGGTCAATTGATCAAAAGGTTTGCTAAGAAATTTCAGAAATTATGGTTCATTATTGAATAGTGTGGTACTAAATTAAAATTAGGAAGTAAGAGAGTGATTATTGGAATATGAAAGTGTATTAAGTGTCAAAGAGTTATCATATTATATATATGTTTGTGGATTTTGGTTTCTTTGTTAAAA

Coding sequence (CDS)

ATGGAGAAAACCCAGAAGCGAAAAGGCTTCATGAGGCGCCTATATCGAGCCGCAAGATCCGCCGGAAAAGCCAAAGCAAAGCAAAGTAACTCGCCGACGCCGGTGGATTTCACGACGGAACCGATCGGAGGTCGTTTCGCGGTGACGAGCGAGATGAAATCTGCGAGTTATCCGAACAAATCGGCGCCGGCGCCAGCGGCGGTGCAGAAGCAGACCTCGTCGGCGCACGGCGGATATCGCGATGGAAACGGCGAAATGCGGGGAGGTTACGGCGGCGGGGACGAGAATGTGGACGTGAAGGCGGCGATGTATATTTTGTGGGTAAGAGAACGTTTGAAGATGGAGAGGTCAATTGATCAAAAGGTTTGCTAA

Protein sequence

MEKTQKRKGFMRRLYRAARSAGKAKAKQSNSPTPVDFTTEPIGGRFAVTSEMKSASYPNKSAPAPAAVQKQTSSAHGGYRDGNGEMRGGYGGGDENVDVKAAMYILWVRERLKMERSIDQKVC

Homology

[Close]

BLAST of Lcy05g010690 vs. ExPASy TrEMBL
Match: A0A5A7TED2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002320 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.4e-28
Identity = 83/126 (65.87%), Postives = 93/126 (73.81%), Query Frame = 0


Query: 1   MEKTQKRKGFMRRLYRAARSAGKAKAKQSNSPTPVDFTTEPIGG----RFAVTSEMKSAS 60
           MEK QKRKGF+RRLYRAARSAGKAK KQ+N PTP   +T P  G     FA +SE +SAS
Sbjct: 1   MEKNQKRKGFIRRLYRAARSAGKAKVKQTNPPTP---STSPNSGDGSDSFANSSETESAS 60

Query: 61  YPNKSAPAPAAVQKQTSSAHGGYRDGNGEMRGGYGGGDENVDVKAAMYILWVRERLKMER 120
            PN+S  A A VQKQ SSAHG Y        GGYGGGDENVDVKAA YIL V+ERLKMER
Sbjct: 61  NPNRSV-AAATVQKQASSAHGAY--------GGYGGGDENVDVKAATYILLVKERLKMER 114

Query: 121 SIDQKV 123
           S+D++V
Sbjct: 121 SMDRRV 114

[Close]

BLAST of Lcy05g010690 vs. ExPASy TrEMBL
Match: A0A0A0KCA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094770 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.5e-25
Identity = 80/126 (63.49%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 1   MEKTQKRKGFMRRLYRAARSAGKAKAKQSNSPTPVDFTTEPIGG----RFAVTSEMKSAS 60
           ME  QKRKGF+RRLYRAARSAGKAK KQSN PTP   +T P  G     FA +SE KSAS
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTP---STSPNSGDGDDPFANSSETKSAS 60

Query: 61  YPNKSAPAPAAVQKQTSSAHGGYRDGNGEMRGGYGGGDENVDVKAAMYILWVRERLKMER 120
            PN+   A   VQKQ SS H G         GGYGGGDENVDVKAA YIL V+ERLKMER
Sbjct: 61  NPNRPV-AATTVQKQASSTHHG-------AYGGYGGGDENVDVKAATYILLVKERLKMER 115

Query: 121 SIDQKV 123
           S+D++V
Sbjct: 121 SMDRRV 115

[Close]

BLAST of Lcy05g010690 vs. ExPASy TrEMBL
Match: W9QW79 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017455 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 52/139 (37.41%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 1   MEKTQKRK---GFMRRLYRAARSAGKAKAKQSN--SPTP-----VDFTTEPIGGRFAVTS 60
           MEKTQKR+   GFMR L++AA          SN   P+P       F  +P+  +   T+
Sbjct: 1   MEKTQKRRSSGGFMRSLFKAAGKPNSIARFGSNKIKPSPSEEKGASFGAQPMEHKTTTTT 60

Query: 61  EMKSASYPNKSAPAPAAVQKQTSSAHGG--YRDGNGEMR----------GGYGGGDENVD 118
            +K    P  +   P       +S +GG  +RD N              GG GG DENVD
Sbjct: 61  FVK----PKNNYGLPDYYYYYDASNYGGNCHRDTNNNNNNNYHYNIGGGGGGGGDDENVD 120

[Close]

BLAST of Lcy05g010690 vs. NCBI nr
Match: KAG6592959.1 (hypothetical protein SDJN03_12435, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.1 bits (383), Expect = 3.0e-33
Identity = 87/116 (75.00%), Postives = 92/116 (79.31%), Query Frame = 0


Query: 11  MRRLYRAARSAGKAKA--KQSNSPTPVDFTTEPIG----GRFAVTSEMKSASYPNKSAPA 70
           MRRLYRAARSAGKAKA  KQSN P  +DF TE +G    GRF   SEM+S SYPNKSA A
Sbjct: 1   MRRLYRAARSAGKAKAKGKQSNPPASMDFATETVGSGGCGRFWERSEMRSESYPNKSAAA 60

Query: 71  PAAVQKQTSSAHGGYRDGNGEMRGGYG--GGDENVDVKAAMYILWVRERLKMERSI 119
           P A QKQ SSAHGG+RDGNGEMRG YG  GGDENVDVKA  YILWVRERLKMERS+
Sbjct: 61  PRAGQKQASSAHGGFRDGNGEMRGTYGGYGGDENVDVKATTYILWVRERLKMERSM 116

[Close]

BLAST of Lcy05g010690 vs. NCBI nr
Match: KAA0039815.1 (hypothetical protein E6C27_scaffold122G00900 [Cucumis melo var. makuwa] >TYK24682.1 hypothetical protein E5676_scaffold266G002320 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 5.0e-28
Identity = 83/126 (65.87%), Postives = 93/126 (73.81%), Query Frame = 0


Query: 1   MEKTQKRKGFMRRLYRAARSAGKAKAKQSNSPTPVDFTTEPIGG----RFAVTSEMKSAS 60
           MEK QKRKGF+RRLYRAARSAGKAK KQ+N PTP   +T P  G     FA +SE +SAS
Sbjct: 1   MEKNQKRKGFIRRLYRAARSAGKAKVKQTNPPTP---STSPNSGDGSDSFANSSETESAS 60

Query: 61  YPNKSAPAPAAVQKQTSSAHGGYRDGNGEMRGGYGGGDENVDVKAAMYILWVRERLKMER 120
            PN+S  A A VQKQ SSAHG Y        GGYGGGDENVDVKAA YIL V+ERLKMER
Sbjct: 61  NPNRSV-AAATVQKQASSAHGAY--------GGYGGGDENVDVKAATYILLVKERLKMER 114

Query: 121 SIDQKV 123
           S+D++V
Sbjct: 121 SMDRRV 114

[Close]

BLAST of Lcy05g010690 vs. NCBI nr
Match: KGN46459.1 (hypothetical protein Csa_005040 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-25
Identity = 80/126 (63.49%), Postives = 88/126 (69.84%), Query Frame = 0


Query: 1   MEKTQKRKGFMRRLYRAARSAGKAKAKQSNSPTPVDFTTEPIGG----RFAVTSEMKSAS 60
           ME  QKRKGF+RRLYRAARSAGKAK KQSN PTP   +T P  G     FA +SE KSAS
Sbjct: 1   MENKQKRKGFIRRLYRAARSAGKAKVKQSNPPTP---STSPNSGDGDDPFANSSETKSAS 60

Query: 61  YPNKSAPAPAAVQKQTSSAHGGYRDGNGEMRGGYGGGDENVDVKAAMYILWVRERLKMER 120
            PN+   A   VQKQ SS H G         GGYGGGDENVDVKAA YIL V+ERLKMER
Sbjct: 61  NPNRPV-AATTVQKQASSTHHG-------AYGGYGGGDENVDVKAATYILLVKERLKMER 115

Query: 121 SIDQKV 123
           S+D++V
Sbjct: 121 SMDRRV 115

[Close]

BLAST of Lcy05g010690 vs. NCBI nr
Match: EXB40313.1 (hypothetical protein L484_017455 [Morus notabilis])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 52/139 (37.41%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 1   MEKTQKRK---GFMRRLYRAARSAGKAKAKQSN--SPTP-----VDFTTEPIGGRFAVTS 60
           MEKTQKR+   GFMR L++AA          SN   P+P       F  +P+  +   T+
Sbjct: 1   MEKTQKRRSSGGFMRSLFKAAGKPNSIARFGSNKIKPSPSEEKGASFGAQPMEHKTTTTT 60

Query: 61  EMKSASYPNKSAPAPAAVQKQTSSAHGG--YRDGNGEMR----------GGYGGGDENVD 118
            +K    P  +   P       +S +GG  +RD N              GG GG DENVD
Sbjct: 61  FVK----PKNNYGLPDYYYYYDASNYGGNCHRDTNNNNNNNYHYNIGGGGGGGGDDENVD 120

The following BLAST results are available for this feature:

BLAST of Lcy05g010690 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy05g010690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TED2	2.4e-28	65.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KCA4	1.5e-25	63.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G094770 PE=4 SV=1	[more]
W9QW79	1.1e-04	37.41	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_017455 PE=4 SV=1	[more]

BLAST of Lcy05g010690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592959.1	3.0e-33	75.00	hypothetical protein SDJN03_12435, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0039815.1	5.0e-28	65.87	hypothetical protein E6C27_scaffold122G00900 [Cucumis melo var. makuwa] >TYK2468...	[more]
KGN46459.1	3.0e-25	63.49	hypothetical protein Csa_005040 [Cucumis sativus]	[more]
EXB40313.1	2.3e-04	37.41	hypothetical protein L484_017455 [Morus notabilis]	[more]

BLAST of Lcy05g010690 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..93
None	No IPR available	PANTHER	PTHR36030	FAMILY NOT NAMED	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy05g010690.1	Lcy05g010690.1	mRNA