Lcy05g009350 (gene) Sponge gourd (P93075) v1

Overview
NameLcy05g009350
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein At4g13200, chloroplastic
LocationChr05: 9670329 .. 9674382 (+)
RNA-Seq ExpressionLcy05g009350
SyntenyLcy05g009350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTAATCCGATTAAGGAATGAACAGCAAAACACAGTGACGGTTCCGGGTTACTGTCAATCGTCCTTACACAGCTCAAGCCACAAGCATCAATTTTTCAATTTTCCCTTTCACCACCAAAGATCTTTCTTTATATATTAATGTTTGGTTGTCAAGAAAATGAGCGAGAAACACTGAGAAAGTGACACATTCCTTTCCATTCCCATCGCACAAAATGAGTAGTGGGGTTACACCTTCGGTTTCCCCATCCCCTTTCTCTCTTCTGAACACACAACCAAAAATTACCCATTGTTCATCTCCATCTCAACTTCTATTTTGTTCCTCTTCCACTCCCTCAAATCTCAGGTTTCGAGGAATTTCACATTTTCGACCAAATGGGTCTCCCAGATTCGTTGCTCGTTGCAGCTCCGGTAACTTTAATCTTCGCCTCCTCTGGTTTTTGTTTCCGAATCCGTTGTTAGTAATTGGTGAATTTTGACGAAGGTGTTATTGGTGAATCTGTTATTAAATCTGTTATTGATTCTGAGATTTTTTTTGGGAATCTCTGCGTTTTCGTTGACTCTTGTTTACAGTTCAAGGTTCTTGTTGATTTCATGAAAGAATGATGGGTTTACTTCCTCGTATGGAGTTATCTGATCATATGACTACAAAGTGTTTGATATATTGTCAATGACTTTGTTTAGCGTGAAGTTGGCCTTATTTTGTTAGATTGGTTTTCTTCAACTCAATGCATTTGCTTGTTAAGAGCTAATTAGTTTTCTAGAGTAGGAATTGATTTTCCTTGCACTTTTTTGAACTCTGAATTTGGACCAAATTATGAAACTTGTCGTGTTGTTAGAAGGGCTTCTACTTCTAATAATGTGGAGGAGAAAATATACACTTTGTTTTTTGGTGAAAATTTGGAAGTTTGATGAATATTTGAGATCAATTAAGGCGAATCTGCTGAAGGACCAAAGAGATCTTGAATTAGACTTCTTTTATTTAGGCTTTTAACCATAGTCTTCATCTCTGATTTCATGAAGATCTTGCTCACAAACTGATATCACAAATCAAATATTTGACTTTCTTTTAATCCACAGCAAGGAAATCGGTTCTGTCGACAAGGTTCTAGGACCATGAGAAAACCCAGTACAATCAGTATATAGTGGAATATCCATGTGCCCTTTTCATAGAATTATCCCCTCTATATTTGCCTTATGCACATAGCTGATATGAGAAAGGAGGAAAACTAGACAACTTTAATAAGATGATATTGATCTTATTAGAAGACAATTCAGTATAAACTATATGGAAAAATAATCTTTTTGGTTTCTGTGATCTTCTAGTTTTGTTATTATTATCAAGCATTCACTGAACTAGCTGTATGATGCAGGTGATGGTGACAGCAGGACTGTTCTAGATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACTGAGCGTATCGAGTCAACAATTGGAGAGGTCTTAGGCGGGATTGGTAGGCTGCAAGCTGAACGACAAAAACAAATTCTTGATTTCCAGGTAGGATGCTCAAAAATTAGTGGTAGACTTGGATGACTGAGATTAGATTCTGATTTTCATTTCCTTCCCATTTGTATGTTTTGTAGCAGTTCAATTTTGCAGCAGATTTCTTTTATCTAATCATCATCATTATTATTAATATTTTACTATCTCTATTTAAAGGACAACAAACTCAGATTCCTTCCCCTTCCAACGTTTGTAGGTTCCTTGCTTCTTTTTCCAATAACCAATGTTTCCCCTGCTACAATACCAGTTAAGAAAAGACATACTGTCATAAATTTGCATAGAACTTCCTAATGTGGTTTTTAATGTACTTTCCCTTTACAAGATAAAAGGGTTGGCCACCTAATGTTGCAAAGATTACATGGGTTGATATGGTGGTCAATAAGAGTCAAGGTAAGTAATTAAGAGCTTATAGGAAATTGGTTCAAGTCATGATGACTATCTACCTAAGATTTAATACACACGATTTACCTTGGCAACTAAATACAATAAGGTCGGTGGTTGTCCCATGAGACTTGTCGGGAATGGGTATTTAAAAAAAAAAAAAACGGAAATTACTGCATTGTTGTGGTCTCTTGAACTATGGATTATACAAAAACAAAGAACAAAAAAGGACCACTGTATGGATGTATTGACTTGAAACAAAATTATTGAAAATCCATAGCTGATGTTTCTGCAATGTTTTCTTTCTTTAAGGTTAGCCAGTGAAATCAACTACTTTTGAGTCACAAGTATCTGATGAAAGAACTGTGGCTGAAAACTTTTTGAATGTAGCTGTAGTTTAGGCCTGGATTGAAGCTTTTACATGAACTAACTGATACCATGCTGCATGACCTATGATGGTGGTTACTGTTATCTCTTGAATTCTTGCCCTTTGGGTGATAAATAGAAAATTTTCATTTTTTATTTTGTACTTTGCTGAGCCGAGTCAATTCTAACCTAAAGCTTTTTGAATAAGTGGTAAGATTTATACATCAAATAGTTAAGTTTTCATTTCTTTTGAAAGTTTAGATTACTCATAAGCATTATTAAGCTTAGAGGTGGTTACTTTTGTGAGCACAAATTCTGTTAGATATTATATTTTTTAGATGGGTTTTGGCATTTTATTGCTGAGTTTTGGCGCTTTTTTTTTACCTACTTGAGGTATTTTTCTGATTTAGTTTCAATGAGATATGAACTTTACAACATTAAAAGTTTAGGGGCCGTTTGGTGCATCGGAATTGGATGGGTTTGGAATGGAATGGAATGGAATCTGATGCCCATGGGAATATTTTGCTGGAATCATGATTCCCATGCCTATGTTTGGTGCATTGGATTTGGGTTGGAATGAATGGAGAGAGAAATAGTGGGACCCACCAAAATTATAAGGAAAATAGAAAAAGAAATGGTGGGTCCCATCAAAATTATGAAGAAAAATGGAAAGAGAAATAGTGGGACCCACCAAAATATGGTTAAAATATAAAAAGAAATGGTGGGTCCCATCAAAATTATGAAGAAAAATGGAGAGAGAAATAGTGGGACCCACAAAAATGTGGGAATGGGTTGGAATCACATGCCCACCATTTCATTCCAAACCCACATCATTCCCGGGCAACCAAACATGGGCATCCCTTTCCAATCCATTCCAAACCCGTGGGCCAAACGGCCCCTTAAGGTTAAAATTGACCTACTAAGTCAATTAGGAATGGTAAAAAATGAAAATTTCCTTCTGTTTCTTTAGAATGTTTTAAATTTCCTCTTAAACTAGATTGGAATGCATGAGGTGAATGAAGCTCAACATCCATGAGTGAAGTTTAAAACCTTTAATACCCGACATCCCTTTATGTTATCTTCTTTTATGCCTATGCTGAAAATGGCATATTCATACTTAAATGAACTTTATACACAGGAGGAGGTGATAGAAAGAGCCAAAAAAGCCAAGGACAAAGCAGCACGTGATGCTAAAGAAGTACAAGGACCCATCTCCTCTTCAATATGGCCTACGATCGAAGTTACTTCATCTCCAACTACTTCGACCGATCGAAAACAAGCCTCGAACCCCGACCCAGATTCCGAAACTGTTGTGAACCAGGATCCTCCTCTTGGTGACGAAGAGTAGTCGTCTTTATATCAATTCTCTTGGTTATAGACTTATAGTGAATGTGACCTATATATCGATGACGATGTGTTAGTCGTTCGATCTCAAAATCATATAGAAATTGTCATTCTTAAGGTTCCTCTTTTAGATATCTTATGAGTTTCTTGATGTCGAATATTGTCAGACCACACAATCTGTTTAGTGAGATCACTCAAGGTTTATAAGTAAGAAACCGTCGGTATTCTTTCATCAGAAGAGACAAGTTCTTTGATTATTTGGCTGATTATCATGGTTGATCTCTCAGTTTGATTTTGATTGCTTGTTGATCCTAATCCTTCAATGGAACAATTTAATCTCTTTTGTTATCATACTTCCATTTTTCATTTGTAGTTCCACTTTGATATCGTTTATTATTATTATAAATTTTCTTAGTTTAAGAATATTTCGG

mRNA sequence

GGGTAATCCGATTAAGGAATGAACAGCAAAACACAGTGACGGTTCCGGGTTACTGTCAATCGTCCTTACACAGCTCAAGCCACAAGCATCAATTTTTCAATTTTCCCTTTCACCACCAAAGATCTTTCTTTATATATTAATGTTTGGTTGTCAAGAAAATGAGCGAGAAACACTGAGAAAGTGACACATTCCTTTCCATTCCCATCGCACAAAATGAGTAGTGGGGTTACACCTTCGGTTTCCCCATCCCCTTTCTCTCTTCTGAACACACAACCAAAAATTACCCATTGTTCATCTCCATCTCAACTTCTATTTTGTTCCTCTTCCACTCCCTCAAATCTCAGGTTTCGAGGAATTTCACATTTTCGACCAAATGGGTCTCCCAGATTCGTTGCTCGTTGCAGCTCCGGTGATGGTGACAGCAGGACTGTTCTAGATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACTGAGCGTATCGAGTCAACAATTGGAGAGGTCTTAGGCGGGATTGGTAGGCTGCAAGCTGAACGACAAAAACAAATTCTTGATTTCCAGGAGGAGGTGATAGAAAGAGCCAAAAAAGCCAAGGACAAAGCAGCACGTGATGCTAAAGAAGTACAAGGACCCATCTCCTCTTCAATATGGCCTACGATCGAAGTTACTTCATCTCCAACTACTTCGACCGATCGAAAACAAGCCTCGAACCCCGACCCAGATTCCGAAACTGTTGTGAACCAGGATCCTCCTCTTGGTGACGAAGAGTAGTCGTCTTTATATCAATTCTCTTGGTTATAGACTTATAGTGAATGTGACCTATATATCGATGACGATGTGTTAGTCGTTCGATCTCAAAATCATATAGAAATTGTCATTCTTAAGGTTCCTCTTTTAGATATCTTATGAGTTTCTTGATGTCGAATATTGTCAGACCACACAATCTGTTTAGTGAGATCACTCAAGGTTTATAAGTAAGAAACCGTCGGTATTCTTTCATCAGAAGAGACAAGTTCTTTGATTATTTGGCTGATTATCATGGTTGATCTCTCAGTTTGATTTTGATTGCTTGTTGATCCTAATCCTTCAATGGAACAATTTAATCTCTTTTGTTATCATACTTCCATTTTTCATTTGTAGTTCCACTTTGATATCGTTTATTATTATTATAAATTTTCTTAGTTTAAGAATATTTCGG

Coding sequence (CDS)

ATGAGTAGTGGGGTTACACCTTCGGTTTCCCCATCCCCTTTCTCTCTTCTGAACACACAACCAAAAATTACCCATTGTTCATCTCCATCTCAACTTCTATTTTGTTCCTCTTCCACTCCCTCAAATCTCAGGTTTCGAGGAATTTCACATTTTCGACCAAATGGGTCTCCCAGATTCGTTGCTCGTTGCAGCTCCGGTGATGGTGACAGCAGGACTGTTCTAGATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACTGAGCGTATCGAGTCAACAATTGGAGAGGTCTTAGGCGGGATTGGTAGGCTGCAAGCTGAACGACAAAAACAAATTCTTGATTTCCAGGAGGAGGTGATAGAAAGAGCCAAAAAAGCCAAGGACAAAGCAGCACGTGATGCTAAAGAAGTACAAGGACCCATCTCCTCTTCAATATGGCCTACGATCGAAGTTACTTCATCTCCAACTACTTCGACCGATCGAAAACAAGCCTCGAACCCCGACCCAGATTCCGAAACTGTTGTGAACCAGGATCCTCCTCTTGGTGACGAAGAGTAG

Protein sequence

MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQKQILDFQEEVIERAKKAKDKAARDAKEVQGPISSSIWPTIEVTSSPTTSTDRKQASNPDPDSETVVNQDPPLGDEE
Homology
[Close]
BLAST of Lcy05g009350 vs. ExPASy Swiss-Prot
Match: Q8LDV3 (Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g13200 PE=1 SV=2)

HSP 1 Score: 102.4 bits (254), Expect = 5.5e-21
Identity = 78/185 (42.16%), Postives = 110/185 (59.46%), Query Frame = 0 

Query: 1   MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFR----GISHFRPNGS 60
           MSS   P  SPS FSL N+  +    +SP    F   ++ SN  F      +   R + S
Sbjct: 1   MSSFTIP--SPSSFSLSNSYNQ----TSPHS--FTLRNSRSNFEFHRLRLDVESRRRSTS 60

Query: 61  PRFVARCS-----SGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQK 120
            R  + CS     SG+ ++++VLDAFFLGKALAE + ERIEST+GEVL  IG+ QAE+QK
Sbjct: 61  LR--SNCSTKGTDSGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQK 120

Query: 121 QILDFQEEVIERAKKAKDKAARDAKEVQGPISSSIWPTIEVTSSPTTSTDRKQASNPDPD 177
           Q+ + QEEV+ERAKKAK++AAR+  E QG ++S     + +T +P         S    +
Sbjct: 121 QVQEIQEEVLERAKKAKERAARETMEEQGLVASK---PVAITRNPDAVVVASVTSTSTVE 172

[Close]
BLAST of Lcy05g009350 vs. ExPASy Swiss-Prot
Match: P73628 (Thylakoid protein sll1769 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1769 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 26/72 (36.11%), Postives = 40/72 (55.56%), Query Frame = 0 

Query: 73  VLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQKQILDFQEEVIERAKKAKDKAA 132
           VL AFFLG+A AE L+E++E  +   L  +G+  AE+++ +  F  EV  RA     +  
Sbjct: 5   VLQAFFLGRAFAEVLSEKVEDGVTNALSELGKFDAEQRENLRQFIAEVQSRAANDVTQEG 64

Query: 133 RDAKEVQGPISS 145
                V GP+S+
Sbjct: 65  AAIATVDGPVSA 76

[Close]
BLAST of Lcy05g009350 vs. ExPASy TrEMBL
Match: A0A0A0K6Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337600 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.6e-66
Identity = 147/185 (79.46%), Postives = 161/185 (87.03%), Query Frame = 0 

Query: 1   MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFV 60
           MSSGVT SVS SPFSL+ T+PKITH S PS LLF SSSTPSNL+FRGISHF+PNG  RF+
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQKQILDFQEEV 120
           ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVL GIGRLQAE+QKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPDPDSETVVNQD 180
           IERAKKAK+KAARD+KEVQGP+SSS I P IEV SSPT       +S+PD DSE+VVNQD
Sbjct: 121 IERAKKAKEKAARDSKEVQGPVSSSVISPKIEVFSSPT-------SSSPDADSESVVNQD 178

Query: 181 PPLGD 185
           P LG+
Sbjct: 181 PSLGE 178

[Close]
BLAST of Lcy05g009350 vs. ExPASy TrEMBL
Match: A0A1S3BHX5 (uncharacterized protein At4g13200, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489747 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.4e-64
Identity = 144/185 (77.84%), Postives = 161/185 (87.03%), Query Frame = 0 

Query: 1   MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFV 60
           MSS +T SVS SPFSL+ T+PKITH SSPS L F SSSTPSNL+FRGISHF+PNGS R +
Sbjct: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLL 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQKQILDFQEEV 120
           ARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVL GIG+LQAE+QKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPDPDSETVVNQD 180
           IERAKKAK+KAAR+AKEVQ P+SSS I PTIEV+SSPT       +S+PD DSE+ VNQD
Sbjct: 121 IERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPT-------SSSPDADSESGVNQD 178

Query: 181 PPLGD 185
           PPLGD
Sbjct: 181 PPLGD 178

[Close]
BLAST of Lcy05g009350 vs. ExPASy TrEMBL
Match: A0A6J1KY61 (uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498180 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.8e-60
Identity = 141/189 (74.60%), Postives = 155/189 (82.01%), Query Frame = 0 

Query: 1   MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFV 60
           M+SGVTPSVSPS FS+L+++PKITH SS           PSNL+FR IS   P GSPRFV
Sbjct: 1   MTSGVTPSVSPSHFSILHSKPKITHLSS-----------PSNLKFRPIS---PIGSPRFV 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQKQILDFQEEV 120
            RCSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVL GIGRLQAE+QKQILDFQEEV
Sbjct: 61  VRCSSGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPISSSI---WPTIEVTSSPTTSTDRKQASNPDPDSETVVN 180
           IERAKKA++KAARDAKEVQGPISSS     PTIEV SS TTST+++Q SNP  DS T  N
Sbjct: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPN 175

Query: 181 QDPPLGDEE 187
           QDPPLGDEE
Sbjct: 181 QDPPLGDEE 175

[Close]
BLAST of Lcy05g009350 vs. ExPASy TrEMBL
Match: A0A6J1GNZ1 (uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111456135 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 4.0e-59
Identity = 136/187 (72.73%), Postives = 155/187 (82.89%), Query Frame = 0 

Query: 1   MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFV 60
           MSSGV  SVS S FS++ T+ KITHCSSPS + F SSST SNL+      FRPNGS RF+
Sbjct: 1   MSSGVASSVSSSLFSVVPTKSKITHCSSPSLVRFRSSSTSSNLK------FRPNGSLRFI 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQKQILDFQEEV 120
           A CSSGDGD+RTVLDAFF+GKA AE LTER+EST+GEVLG IGRLQAERQ+QI+DFQEEV
Sbjct: 61  ASCSSGDGDNRTVLDAFFIGKAFAETLTERVESTVGEVLGEIGRLQAERQQQIIDFQEEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPDPDSETVVNQD 180
           I+RAKKAK+KA RDAKE QGPISSS I  TIEVTSSPT S++ +Q S+P+  SETVVNQD
Sbjct: 121 IDRAKKAKEKAERDAKEAQGPISSSIISATIEVTSSPTASSNGQQRSSPNAYSETVVNQD 180

Query: 181 PPLGDEE 187
           PP GDEE
Sbjct: 181 PPRGDEE 181

[Close]
BLAST of Lcy05g009350 vs. ExPASy TrEMBL
Match: A0A6J1JX27 (uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488248 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 5.3e-59
Identity = 138/187 (73.80%), Postives = 154/187 (82.35%), Query Frame = 0 

Query: 1   MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFV 60
           MSSGV  SVSPS FS+L T+ KITHCSSPS + F SSST SNL+      FRPNGS RF+
Sbjct: 1   MSSGVASSVSPSLFSVLPTRSKITHCSSPSLVRFRSSSTSSNLK------FRPNGSLRFI 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQKQILDFQEEV 120
           A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+GEVL  IGRLQAERQ+QI+DFQEEV
Sbjct: 61  ASCSSGDGDNRTVLDAFFLGKAFAETLTERVESTVGEVLSEIGRLQAERQQQIIDFQEEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPISSSIW-PTIEVTSSPTTSTDRKQASNPDPDSETVVNQD 180
           IERAKKAK+KA RDAKE QGPISSSI   TIEVTSSPT S++ +Q S+ +  SETVVNQD
Sbjct: 121 IERAKKAKEKAERDAKEAQGPISSSILSATIEVTSSPTGSSNGQQRSSLNAYSETVVNQD 180

Query: 181 PPLGDEE 187
           PP GDEE
Sbjct: 181 PPRGDEE 181

[Close]
BLAST of Lcy05g009350 vs. NCBI nr
Match: XP_038900031.1 (uncharacterized protein At4g13200, chloroplastic [Benincasa hispida])

HSP 1 Score: 293.9 bits (751), Expect = 9.8e-76
Identity = 161/187 (86.10%), Postives = 172/187 (91.98%), Query Frame = 0 

Query: 1   MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFV 60
           MSSGVT SVS SPFSL+ T+PKITH SS S LLF SSSTPSNL+FR ISHF+PNGSPRF+
Sbjct: 1   MSSGVTSSVSQSPFSLVPTKPKITHYSSQSLLLFRSSSTPSNLKFRRISHFQPNGSPRFI 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQKQILDFQEEV 120
           ARCSSGDGDSRTVLDAFFLGKALAEALTERIEST+GEVL GIGRLQAE+QKQI DFQEEV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTVGEVLSGIGRLQAEQQKQITDFQEEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPISSSIW-PTIEVTSSPTTSTDRKQASNPDPDSETVVNQD 180
           IERAKKAKDKAARDAKEVQGP+SSSI  PTIEVTSSPT ST+R+Q SNPD DSETVVNQD
Sbjct: 121 IERAKKAKDKAARDAKEVQGPVSSSITSPTIEVTSSPTPSTNRQQLSNPDQDSETVVNQD 180

Query: 181 PPLGDEE 187
           PPLGD+E
Sbjct: 181 PPLGDKE 187

[Close]
BLAST of Lcy05g009350 vs. NCBI nr
Match: XP_004139667.1 (uncharacterized protein At4g13200, chloroplastic [Cucumis sativus] >KGN44584.1 hypothetical protein Csa_015636 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 5.4e-66
Identity = 147/185 (79.46%), Postives = 161/185 (87.03%), Query Frame = 0 

Query: 1   MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFV 60
           MSSGVT SVS SPFSL+ T+PKITH S PS LLF SSSTPSNL+FRGISHF+PNG  RF+
Sbjct: 1   MSSGVTSSVSQSPFSLVTTKPKITHYSPPSLLLFRSSSTPSNLKFRGISHFQPNGPSRFL 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQKQILDFQEEV 120
           ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVL GIGRLQAE+QKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLSGIGRLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPDPDSETVVNQD 180
           IERAKKAK+KAARD+KEVQGP+SSS I P IEV SSPT       +S+PD DSE+VVNQD
Sbjct: 121 IERAKKAKEKAARDSKEVQGPVSSSVISPKIEVFSSPT-------SSSPDADSESVVNQD 178

Query: 181 PPLGD 185
           P LG+
Sbjct: 181 PSLGE 178

[Close]
BLAST of Lcy05g009350 vs. NCBI nr
Match: XP_008447268.1 (PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 5.0e-64
Identity = 144/185 (77.84%), Postives = 161/185 (87.03%), Query Frame = 0 

Query: 1   MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFV 60
           MSS +T SVS SPFSL+ T+PKITH SSPS L F SSSTPSNL+FRGISHF+PNGS R +
Sbjct: 1   MSSRITSSVSWSPFSLVPTKPKITHYSSPSLLPFRSSSTPSNLQFRGISHFQPNGSSRLL 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQKQILDFQEEV 120
           ARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVL GIG+LQAE+QKQI DFQ+EV
Sbjct: 61  ARCSSGDGDSRTILDAFFLGKALAEALTERIESTIGEVLSGIGKLQAEQQKQITDFQDEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPDPDSETVVNQD 180
           IERAKKAK+KAAR+AKEVQ P+SSS I PTIEV+SSPT       +S+PD DSE+ VNQD
Sbjct: 121 IERAKKAKEKAAREAKEVQRPVSSSVISPTIEVSSSPT-------SSSPDADSESGVNQD 178

Query: 181 PPLGD 185
           PPLGD
Sbjct: 181 PPLGD 178

[Close]
BLAST of Lcy05g009350 vs. NCBI nr
Match: XP_023005089.1 (uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 240.7 bits (613), Expect = 9.8e-60
Identity = 141/189 (74.60%), Postives = 155/189 (82.01%), Query Frame = 0 

Query: 1   MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFV 60
           M+SGVTPSVSPS FS+L+++PKITH SS           PSNL+FR IS   P GSPRFV
Sbjct: 1   MTSGVTPSVSPSHFSILHSKPKITHLSS-----------PSNLKFRPIS---PIGSPRFV 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQKQILDFQEEV 120
            RCSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVL GIGRLQAE+QKQILDFQEEV
Sbjct: 61  VRCSSGDDDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPISSSI---WPTIEVTSSPTTSTDRKQASNPDPDSETVVN 180
           IERAKKA++KAARDAKEVQGPISSS     PTIEV SS TTST+++Q SNP  DS T  N
Sbjct: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTTSTNQQQLSNPSSDSGTAPN 175

Query: 181 QDPPLGDEE 187
           QDPPLGDEE
Sbjct: 181 QDPPLGDEE 175

[Close]
BLAST of Lcy05g009350 vs. NCBI nr
Match: XP_023514675.1 (uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.4 bits (607), Expect = 4.9e-59
Identity = 140/189 (74.07%), Postives = 155/189 (82.01%), Query Frame = 0 

Query: 1   MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFV 60
           M+SGVTPSVSPS FS+L+++PKITH SS           PSNL+FR IS   P GSPRFV
Sbjct: 1   MTSGVTPSVSPSHFSILHSKPKITHFSS-----------PSNLKFRPIS---PIGSPRFV 60

Query: 61  ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQKQILDFQEEV 120
            RCSSGDGDSRTVL+AFFLGKALAEALTER+ESTIGEVL GIGRLQAE+QKQILDFQEEV
Sbjct: 61  VRCSSGDGDSRTVLNAFFLGKALAEALTERVESTIGEVLSGIGRLQAEQQKQILDFQEEV 120

Query: 121 IERAKKAKDKAARDAKEVQGPISSSI---WPTIEVTSSPTTSTDRKQASNPDPDSETVVN 180
           IERAKKA++KAARDAKEVQGPISSS     PTIEV SS T+ST+++Q SNP  DS T  N
Sbjct: 121 IERAKKAQEKAARDAKEVQGPISSSSSIRSPTIEVASSSTSSTNQQQLSNPGSDSGTAPN 175

Query: 181 QDPPLGDEE 187
           QDPPLG EE
Sbjct: 181 QDPPLGGEE 175

[Close]
BLAST of Lcy05g009350 vs. TAIR 10
Match: AT4G13200.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to 97 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 102.4 bits (254), Expect = 3.9e-22
Identity = 78/185 (42.16%), Postives = 110/185 (59.46%), Query Frame = 0 

Query: 1   MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFR----GISHFRPNGS 60
           MSS   P  SPS FSL N+  +    +SP    F   ++ SN  F      +   R + S
Sbjct: 1   MSSFTIP--SPSSFSLSNSYNQ----TSPHS--FTLRNSRSNFEFHRLRLDVESRRRSTS 60

Query: 61  PRFVARCS-----SGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQK 120
            R  + CS     SG+ ++++VLDAFFLGKALAE + ERIEST+GEVL  IG+ QAE+QK
Sbjct: 61  LR--SNCSTKGTDSGENENKSVLDAFFLGKALAEVINERIESTVGEVLSTIGKFQAEQQK 120

Query: 121 QILDFQEEVIERAKKAKDKAARDAKEVQGPISSSIWPTIEVTSSPTTSTDRKQASNPDPD 177
           Q+ + QEEV+ERAKKAK++AAR+  E QG ++S     + +T +P         S    +
Sbjct: 121 QVQEIQEEVLERAKKAKERAARETMEEQGLVASK---PVAITRNPDAVVVASVTSTSTVE 172

The following BLAST results are available for this feature:
BLAST of Lcy05g009350 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LDV35.5e-2142.16Uncharacterized protein At4g13200, chloroplastic OS=Arabidopsis thaliana OX=3702... [more]
P736281.2e-0436.11Thylakoid protein sll1769 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111... [more]
BLAST of Lcy05g009350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6Q22.6e-6679.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G337600 PE=4 SV=1[more]
A0A1S3BHX52.4e-6477.84uncharacterized protein At4g13200, chloroplastic isoform X1 OS=Cucumis melo OX=3... [more]
A0A6J1KY614.8e-6074.60uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=366... [more]
A0A6J1GNZ14.0e-5972.73uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita moschata OX=3... [more]
A0A6J1JX275.3e-5973.80uncharacterized protein At4g13200, chloroplastic-like OS=Cucurbita maxima OX=366... [more]
BLAST of Lcy05g009350 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900031.19.8e-7686.10uncharacterized protein At4g13200, chloroplastic [Benincasa hispida][more]
XP_004139667.15.4e-6679.46uncharacterized protein At4g13200, chloroplastic [Cucumis sativus] >KGN44584.1 h... [more]
XP_008447268.15.0e-6477.84PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis ... [more]
XP_023005089.19.8e-6074.60uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima][more]
XP_023514675.14.9e-5974.07uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pep... [more]
BLAST of Lcy05g009350 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G13200.13.9e-2242.16unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 107..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 142..174
IPR040003Plastoglobular protein 18-likePANTHERPTHR35745BNACNNG14650D PROTEINcoord: 1..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy05g009350.1Lcy05g009350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010027 thylakoid membrane organization
cellular_component GO:0009535 chloroplast thylakoid membrane